NO06G03930, NO06G03930 (gene) Nannochloropsis oceanica

Overview
NameNO06G03930
Unique NameNO06G03930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1854
Alignment locationchr6:1099669..1101522 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1099669..1101522 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G03930 vs. NCBI_GenBank
Match: EWM26376.1 (hypothetical protein Naga_100031g38 [Nannochloropsis gaditana])

HSP 1 Score: 550.4 bits (1417), Expect = 6.900e-153
Identity = 367/600 (61.17%), Postives = 399/600 (66.50%), Query Frame = 0 
Query:    9 VATVESIRPP--PLTACLDASLLLHILSFVVGKEALEHWRGQSKDCLLCPLSEGEAIHYITTTLAASRGDCRLVCKEWCQVLGGPFLRSIGLRARGMGGVVTENSARESMSFISTGNNTNTPHRQFGPWNGPKLFSGIRSATLAVTLTMLLDPLEAWHRELVAIAPRAGSGGDNGGAVGVRLNVERPGDTKEEVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQHVDNGGIMGGLGGSIFLGHGGGNEVEEDSLDAITQLTRPSLPPPFALRPLPPLKAGFVLREICLSNLTTAKEKINNVNGPGGGFVTPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEPFTLRDDTVHLLLRHMPATVERLSLARNPHLHRPLTPLSSQPLAPHLKEIVLDGCWRVDMYHLRAVEAVRGTGLSVDLLHECFGNGRGATGGSRPCGMKEVVILNGKFRGQWVKCWVIHKAGPSRYHCKVCATTEFDNAVGFSDRAALDISRKHLRHFCGRKVE 607
            V+T + I P   P    LDASLLLH  SF +G+EAL+HWRGQSKDC LCPLSEGE I  IT+  A  RGDCRLVCKEWCQVLGGP L+S+G  A+ +             +  ++     TP RQFGPWNGP +FSG+RS T AVTL+MLLDPLE W  EL A+A R        GAV VRL V++ G TK EV                                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         V H D GG MGGLGG +F GHG  N  EED+LDAITQL    LP PF LR LPP  +GFVLREI L+ LTTA+E    V G   G  TP                XXXXXXXXXXXXXX                  +EPF L DDTVHLLLRHMP TVERLSLARNPHLHRPL+PLSS P+APHLKEIVLDGCWR+DMYHLRAVEAVRGTGL VDLLHECFGNGRG++GGSRPCGMKEVVILNGK RG WV+CWVIHKAGPSRYHCKVCAT E+DNAVGFSDRAALDISRKHLRHFCGRKVE
Sbjct:    8 VSTDKLIEPTCNPCMNYLDASLLLHAFSFAMGEEALKHWRGQSKDCCLCPLSEGEEIPLITSKSARLRGDCRLVCKEWCQVLGGPVLKSVGFPAQDL-----------LRTHATSNRQVCTPPRQFGPWNGPDMFSGLRSVTFAVTLSMLLDPLEGWQEELQALASRR----KGSGAVNVRLQVKKVGRTKREV--------------------------RAILARASTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPLPGNVWPATPEEEGEVDILEDVPHADTGGTMGGLGGVVF-GHGPDNGAEEDALDAITQLRPQILPRPFTLRLLPPPTSGFVLREIDLAGLTTAQE---GVEGSSLGVSTP----------------XXXXXXXXXXXXXXDRGSQSVSPPHTPPSVPFEEPFNLLDDTVHLLLRHMPGTVERLSLARNPHLHRPLSPLSSHPIAPHLKEIVLDGCWRIDMYHLRAVEAVRGTGLWVDLLHECFGNGRGSSGGSRPCGMKEVVILNGKHRGAWVRCWVIHKAGPSRYHCKVCATVEYDNAVGFSDRAALDISRKHLRHFCGRKVE 546
The following BLAST results are available for this feature:
BLAST of NO06G03930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26376.16.900e-15361.17hypothetical protein Naga_100031g38 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000083NSK000083Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03930.1NO06G03930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100031g38gene4141Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03930.1NO06G03930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03930 ID=NO06G03930|Name=NO06G03930|organism=Nannochloropsis oceanica|type=gene|length=1854bp
ATGCTCCCGGTAGTAGTGGAGGAGGTTGCTACGGTCGAATCCATACGGCC
ACCACCACTCACGGCCTGCCTGGACGCCTCTCTATTGCTGCACATCCTGA
GCTTCGTCGTCGGGAAGGAGGCCTTGGAGCATTGGCGCGGGCAGTCGAAA
GACTGCTTATTGTGTCCACTCTCGGAGGGGGAGGCCATCCACTACATCAC
TACCACATTAGCAGCTTCCCGGGGCGACTGCCGATTGGTCTGTAAAGAAT
GGTGCCAAGTGCTGGGTGGACCCTTTTTGCGAAGCATAGGCTTGCGTGCC
CGTGGGATGGGTGGCGTCGTAACTGAAAACAGTGCAAGGGAGAGTATGTC
ATTCATCAGTACTGGCAACAACACCAACACGCCTCACCGGCAATTCGGCC
CGTGGAACGGTCCCAAGCTCTTCTCCGGCATTCGATCTGCGACCCTAGCT
GTGACCTTGACCATGCTGTTGGATCCTTTGGAGGCATGGCACCGAGAGCT
CGTTGCGATAGCACCAAGAGCCGGGAGTGGTGGAGATAATGGAGGGGCGG
TCGGGGTGAGACTCAATGTGGAGCGGCCCGGAGATACAAAGGAAGAAGTG
ATGGCCTTGTTGGCGCGGGCAGCATTGGCAGCGGTGCAGGAGAACGAGGA
AGACGACGAAAGAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGG
AGGAAGATGAGACGGCGGCTGGGGTGTTGGTGCACGACGATGAGGACGAG
GACGAAGAGGAGGATGAGATTGCAGCAGGGGGCCAGCCACCGGCAATAGT
TTTGCCTCTCGGACCCCCTGCGGCGGGGAATTTAATCGCTCCTCCCCAAG
GAAACGTGGTTGGCAATGACGCGGAAGAGGAGGAGGAGGAGGGAGGGGAG
GATCAAGCGGTCCAGCACGTGGACAACGGAGGGATCATGGGCGGGCTGGG
TGGGAGCATATTTTTGGGACATGGCGGAGGAAATGAGGTGGAAGAAGACT
CATTGGATGCCATCACTCAACTGACGCGCCCGTCCTTGCCTCCTCCTTTC
GCCTTGCGGCCGTTGCCTCCCCTGAAGGCTGGGTTTGTGCTGCGGGAGAT
TTGTTTATCCAACTTGACGACGGCCAAGGAGAAGATCAACAATGTGAATG
GCCCAGGAGGAGGGTTTGTGACGCCTCATTTTCATTACCACCACCACCCA
CTTTTTGAAGGGACGGCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGTGGGGGAGGAAGTGCCCGAGGCAGCAGCGGTAGTACCCCTTCTCCTC
CCCCTCTTCCCTTACCATACGACGAACCCTTCACTTTGAGGGATGACACG
GTCCACCTGCTTCTTCGACACATGCCCGCCACGGTCGAGCGTCTCTCTCT
CGCGCGTAATCCGCACTTGCACCGACCCCTCACCCCGTTGTCTTCCCAAC
CACTCGCCCCTCATTTGAAAGAGATTGTGCTGGATGGGTGTTGGCGTGTG
GATATGTATCATCTCCGGGCAGTGGAGGCGGTGCGGGGGACAGGTCTTTC
AGTAGATTTACTGCATGAGTGTTTTGGGAACGGCAGAGGGGCTACCGGAG
GGTCGAGGCCGTGCGGGATGAAGGAGGTGGTGATTTTGAATGGGAAGTTT
AGGGGTCAGTGGGTGAAGTGTTGGGTGATTCATAAGGCGGGCCCGTCGAG
GTATCACTGTAAAGTATGTGCAACAACGGAGTTTGACAATGCCGTGGGTT
TCTCGGACCGCGCGGCCTTGGATATCAGTCGGAAGCATTTGCGGCATTTT
TGTGGGAGGAAGGTGGAGGGGGAGGAGGGGGGAAACGGAGGGAACAAGTG
GTGA
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protein sequence of NO06G03930.1

>NO06G03930.1-protein ID=NO06G03930.1-protein|Name=NO06G03930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=618bp
MLPVVVEEVATVESIRPPPLTACLDASLLLHILSFVVGKEALEHWRGQSK
DCLLCPLSEGEAIHYITTTLAASRGDCRLVCKEWCQVLGGPFLRSIGLRA
RGMGGVVTENSARESMSFISTGNNTNTPHRQFGPWNGPKLFSGIRSATLA
VTLTMLLDPLEAWHRELVAIAPRAGSGGDNGGAVGVRLNVERPGDTKEEV
MALLARAALAAVQENEEDDEREEEEEEEEEEEEEEDETAAGVLVHDDEDE
DEEEDEIAAGGQPPAIVLPLGPPAAGNLIAPPQGNVVGNDAEEEEEEGGE
DQAVQHVDNGGIMGGLGGSIFLGHGGGNEVEEDSLDAITQLTRPSLPPPF
ALRPLPPLKAGFVLREICLSNLTTAKEKINNVNGPGGGFVTPHFHYHHHP
LFEGTAGGGGGGGGGGGGGGGSARGSSGSTPSPPPLPLPYDEPFTLRDDT
VHLLLRHMPATVERLSLARNPHLHRPLTPLSSQPLAPHLKEIVLDGCWRV
DMYHLRAVEAVRGTGLSVDLLHECFGNGRGATGGSRPCGMKEVVILNGKF
RGQWVKCWVIHKAGPSRYHCKVCATTEFDNAVGFSDRAALDISRKHLRHF
CGRKVEGEEGGNGGNKW*
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Synonyms
Publications