NO06G03920, NO06G03920 (gene) Nannochloropsis oceanica

Overview
NameNO06G03920
Unique NameNO06G03920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1715
Alignment locationchr6:1096271..1097985 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1096271..1097985 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036020WW_dom_sf
IPR001202WW_dom
IPR000008C2_dom
Homology
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BLAST of NO06G03920 vs. NCBI_GenBank
Match: XP_001689911.1 (predicted protein [Chlamydomonas reinhardtii] >PNW88129.1 hypothetical protein CHLRE_01g015500v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 68.6 bits (166), Expect = 5.800e-8
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 0 
Query:   16 ARGLRNVEILGLKQDPYLRLRAGNQVFQTCVVKDGGGMASWNESFQIPIPNVTEREFLFLTVLDHNTLTDDTEIGSAKLSLIDVSSQ-FQVGCFDIFDKHANKVGVVDLAL 126
            A+GL++ +  G KQDPY++LR GNQ  ++    DGG    W E+F+  I N    E   LT++D +TLT D  IG+A +SL     Q  +V    ++ KH    G V L+L
Sbjct:   15 AKGLKDQDWFG-KQDPYVKLRLGNQERRSRTCIDGGKNPVWEETFEFGIINENTLE---LTLMDEDTLTRDDLIGTATISLARTREQGHEVVQAPVYTKHYKAKGFVQLSL 121
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BLAST of NO06G03920 vs. NCBI_GenBank
Match: CBJ33001.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.2 bits (165), Expect = 7.500e-8
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 0 
Query:    9 LHVQARAARGLRNVEILGLKQDPYLRL---RAGNQVFQTCVVKDGGGMASWNESFQIPIPNVTEREFLFLTVLDHNTLTDDTEIGSAKLSLIDVSSQFQVGCFDIFDKHANKVGVVDLALRLE 129
            L++ A+ A+GL+NV+++G +QDPYL+L   RAG +V +T V +DGG +A+WNE+F   + NV   E       + N +TD   IG  K  L       Q     I++      G V L  R++
Sbjct:   10 LYIVAKEAKGLKNVQMIG-RQDPYLKLWVGRAGTKV-KTKVHEDGGKVATWNETFVFDLQNVDAEECFHFEAKNKN-VTDSKTIGMGKFPLKHFGPVAQATWHKIYNIKGKPAGEVLLEGRMD 129
The following BLAST results are available for this feature:
BLAST of NO06G03920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_001689911.15.800e-838.74predicted protein [Chlamydomonas reinhardtii] >PNW... [more]
CBJ33001.17.500e-835.77conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03920.1NO06G03920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|125878gene_6724Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03920.1NO06G03920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03920 ID=NO06G03920|Name=NO06G03920|organism=Nannochloropsis oceanica|type=gene|length=1715bp
ATGGCGACAGCTACAGGGGCTATCCTGCATGTCCAGGgtacgcccaaagt
gttttctctctctagcctaccgcggcgctgctacattcctctcccttgca
atccatttccctacccatgtcattggtgtgttaacatacctttcctacac
aaatttggacatacttctaccctatgacagCCAGAGCCGCGCGCGGCTTG
CGGAATGTCGAGATTCTGGGCTTGAAGCAAGACCCTTACTTGAGGCTGCG
AGCGGGGAACCAGGTGTTTCAGACGTGTGTTGTCAAAGATGGAGGTGGTA
TGGCCAGCTGGAATGAGAGTTTTCAGATTCCGATCCCAAATGTGACGGAA
AGgtacgtgtctgtattcttttgtcgaggaacgaggcgatgaagtccgac
tgtgtgtagaaagaaagccctacagtaggtatgacttgtacgatgcggta
actttgatcctgtaccattccccccattgagtgattcaagcttgactggt
tttgtgccctgatttctcaattgtgacatcgtgacatattatatttcacg
taatctctacgccttccccacccttctctacagAGAATTTCTCTTCCTGA
CTGTTTTGGACCACAACACCCTCACCGACGACACAGAGATTGGCAGCGCA
AAACTTTCCCTGATCGACGTTTCCTCCCAATTTCAAGTGGGTTGCTTTGA
TATCTTTGACAAGCACGCAAATAAAGTTGGTGTGGTGGACCTAGCCCTGC
GTCTAGAACGCGTTTGCTTACCCTTTGGTGCTTCAATCCCTACACCTGCG
GCACCTCCAGTAAAGCCTACGCCTTTGGCCAAACCGGTGCCTATAGCCAA
TGGCAGTGACTCGCTTTACCCGCACCAGCAGTATAAGCAGCAGCAGCAGC
AGTTGCAGCAGCAACTGCAGGAGCACAGGCACCAAAGGACAGGCTTTTCC
TCCATTGCGGCTTTCCCTTCGTCCAACATGCCCCCGCAAGCCTTTTACGT
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCGCACGAGCAGGAACAG
CAGCAGCATGGAACCTCCCCTATCATTTACGCCCCTCGACCTGTCGTGGC
GGCCTCACCCGTGCGAGTCCTTAATTACCCTTACAACCCTGCTCCTTCCT
TGTTCGCCACTGGCGTCGCGCCATATTCATCGCCTTCCATGACGCCACAG
GAGCATCAGCAGCAGCTACAGTACGAAAATGAGGTGCCCGAGCGCTTATA
TTATGCAAGCACGCCCGGCCGGCCTTTCACCCCCGTGCCGTCCGCGTACC
TGCTCTGTGCTTCTCCCTATGGCAACATAGGAGGCACTAGTACTCCTACC
AGTACTGGGCATTTCTCTCCCTTCCGACACGAGCAGCAGCAGCAGCAGCT
TCAACAGCAACAAGAGAAACAACAGTATACCTCCCCTTCTATGCCAAAGC
CGCTGTGTGTGGAGGGGAGCAGCAGCTACAACAGAGACGGGAAGAGGCAG
ATTGGAATGGAGGAGGAAGAGAACAACACCGAGAACGCCCTGCCGCCTTA
TTGGGAGGAGAGAAGGATGCATGACGGTCGTACCTTTTACTTAGATCATA
TCCGTAAGGTCACGACTTGGACACGGCCATTGGCACTGGGGGATGAACCC
GAGTATACCGCTTGA
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protein sequence of NO06G03920.1

>NO06G03920.1-protein ID=NO06G03920.1-protein|Name=NO06G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MATATGAILHVQARAARGLRNVEILGLKQDPYLRLRAGNQVFQTCVVKDG
GGMASWNESFQIPIPNVTEREFLFLTVLDHNTLTDDTEIGSAKLSLIDVS
SQFQVGCFDIFDKHANKVGVVDLALRLERVCLPFGASIPTPAAPPVKPTP
LAKPVPIANGSDSLYPHQQYKQQQQQLQQQLQEHRHQRTGFSSIAAFPSS
NMPPQAFYVQQQQQQQQQQQQQQQQQQQQQQQQQQQSHEQEQQQHGTSPI
IYAPRPVVAASPVRVLNYPYNPAPSLFATGVAPYSSPSMTPQEHQQQLQY
ENEVPERLYYASTPGRPFTPVPSAYLLCASPYGNIGGTSTPTSTGHFSPF
RHEQQQQQLQQQQEKQQYTSPSMPKPLCVEGSSSYNRDGKRQIGMEEEEN
NTENALPPYWEERRMHDGRTFYLDHIRKVTTWTRPLALGDEPEYTA*
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Synonyms
Publications