NO06G03790, NO06G03790 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G03790 vs. NCBI_GenBank
Match: ABZ08202.1 (putative NOL1/NOP2/sun family protein [uncultured marine microorganism HF4000_APKG2J17]) HSP 1 Score: 85.9 bits (211), Expect = 1.900e-13 Identity = 51/123 (41.46%), Postives = 67/123 (54.47%), Query Frame = 0 Query: 38 GKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEASLRAATQAWSDRNGG 161 GK G+ D VL D C+ +G RR RW +D L + A+Q +LA AQ+ K GGRL++ATCS L+EENE LAWFLE++GD F+ALP Q W++ GG Sbjct: 314 GKNAGKMDRVLADVPCTRTGAWRRVPDARWRSTLDD-LDDMIAVQRRILASAQILVKPGGRLIYATCSLLQEENERQLAWFLEKHGD----------FQALP----------IDQVWAETVGG 415
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_066662702.1 (hypothetical protein [Denitrobacterium detoxificans] >SEO77323.1 16S rRNA (cytosine967-C5)-methyltransferase [Denitrobacterium detoxificans]) HSP 1 Score: 84.0 bits (206), Expect = 7.100e-13 Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 0 Query: 45 DVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEAS 147 D V +DA CS G RRH +RW L+P D + L +Q +L +A KVGGRL +ATC+ L +ENE+V+ FLE D GK CFR +PW E+A+ Sbjct: 334 DGVFLDAPCSGVGTLRRHPEIRWRLRPAD-VRALAELQLQMLTEASTRVKVGGRLAYATCTVLAQENEQVVKAFLE--SDQGK------CFRLVPWDPEDAN 426
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_088863958.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Thermococcus barossii] >ASJ03906.1 Fmu (Sun) domain-containing protein [Thermococcus barossii]) HSP 1 Score: 83.6 bits (205), Expect = 9.300e-13 Identity = 47/121 (38.84%), Postives = 70/121 (57.85%), Query Frame = 0 Query: 41 EGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQG--EEASLRAATQAWSDRNG 160 EG D V++DA C+S G ++ LRW L+ E + + +Q L+ A K GGRL+++TCS LKEENE+V+ WFLE++GD R +P +G +E L+ +AW R+G Sbjct: 319 EGIADRVMLDAPCTSDGTIAKNPELRWRLR-EKNIPKVVELQKELIESAWELLKPGGRLLYSTCSMLKEENEDVVTWFLERHGDA----------RLVPLRGPYDEGFLKGTMRAWPHRHG 428
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_088867581.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Thermococcus radiotolerans] >ASJ15570.1 Fmu (Sun) domain-containing protein [Thermococcus radiotolerans]) HSP 1 Score: 80.1 bits (196), Expect = 1.000e-11 Identity = 47/121 (38.84%), Postives = 66/121 (54.55%), Query Frame = 0 Query: 41 EGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQG--EEASLRAATQAWSDRNG 160 EG D V++DA C+S G ++ LRW L+ E + + +Q LL A K GGRL+++TCS L EENEEV+ WFLE++GD +P G +E L +AW R+G Sbjct: 319 EGMADRVMLDAPCTSDGTIAKNPELRWRLR-EKNIPKVVKLQRELLESAWRLLKPGGRLLYSTCSMLPEENEEVVEWFLERHGDAA----------LIPLDGPYDEGFLPGTMRAWPHRHG 428
BLAST of NO06G03790 vs. NCBI_GenBank
Match: OLQ12913.1 (Ribosomal RNA small subunit methyltransferase B [Symbiodinium microadriaticum]) HSP 1 Score: 79.7 bits (195), Expect = 1.300e-11 Identity = 56/167 (33.53%), Postives = 77/167 (46.11%), Query Frame = 0 Query: 39 KEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQG----------EEASLRAATQAWSDRNGGEERREELAPGTVQLLPHGAWNGWLLYGEVRKVSMK 196 K + DVVLVDA CSS GV RRH S RW L+ E + ++ A Q +L +A VGGRLV+ATCS L+ EN+ V F + GD CFR P++ E + W +N E R+ + P + +GE +S+K Sbjct: 339 KPSSQADVVLVDAPCSSCGVWRRHPSQRWALQ-ESEIDSIAAQQLQILEEASQLVHVGGRLVYATCSLLRAENDAVAERFEQLAGD---------CFRRWPFESGRHCRTLMPHVEGTDGFFMARWQRQNKASESRQSIMPVATARNDASMGESIIKFGEAVSMSLK 495
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_088863188.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Thermococcus celer] >ASI99253.1 Fmu (Sun) domain-containing protein [Thermococcus celer Vu 13 = JCM 8558]) HSP 1 Score: 79.7 bits (195), Expect = 1.300e-11 Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 0 Query: 41 EGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQG--EEASLRAATQAWSDRNG 160 +GR D VL+DA C+S G ++ LRW L+ E + + ++Q LL A K GGRL+++TCS +EENE V+ WFL ++GD R +P +G +E L +AW R+G Sbjct: 319 KGRVDRVLLDAPCTSDGTMAKNPELRWRLR-EKNIPKVVSLQRELLESAWKLLKPGGRLLYSTCSMFREENEGVVEWFLRRHGDA----------RLVPIEGSYDEGFLPGTMRAWPHRHG 428
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_088179738.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Thermococcus sp. 5-4] >ASA76827.1 Fmu (Sun) domain-containing protein [Thermococcus sp. 5-4]) HSP 1 Score: 79.3 bits (194), Expect = 1.700e-11 Identity = 47/121 (38.84%), Postives = 66/121 (54.55%), Query Frame = 0 Query: 41 EGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQG--EEASLRAATQAWSDRNG 160 EG D V++DA C+S G ++ LRW L+ E + + +Q LL A K GGRL+++TCS L EENEEV+ WFLE++GD +P G +E L +AW R+G Sbjct: 319 EGIADRVMLDAPCTSDGTIAKNPELRWRLR-EKNIPKVVKLQRELLESAWRLLKPGGRLLYSTCSMLPEENEEVVEWFLERHGDAA----------LIPLDGPYDEGFLPGTMRAWPHRHG 428
BLAST of NO06G03790 vs. NCBI_GenBank
Match: PIU58408.1 (hypothetical protein COS89_00550 [Deltaproteobacteria bacterium CG07_land_8_20_14_0_80_38_7]) HSP 1 Score: 79.3 bits (194), Expect = 1.700e-11 Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 0 Query: 39 KEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123 K EG+CDVVLVDA CS SG RR+ L+W L +D + +Q ALL +A K GR+V+ TCS +ENEE+ AWF +++ Sbjct: 300 KLEGKCDVVLVDAPCSGSGTIRRNPDLKWRLN-KDVINDRTNLQKALLEKATQLVKDNGRIVYITCSIFPQENEEIAAWFCQKF 382
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_011387996.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Rhodospirillum rubrum] >YP_425335.1 tRNA/rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170] >ABC21048.1 tRNA/rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170] >AEO46716.1 tRNA/rRNA cytosine-C5-methylase [Rhodospirillum rubrum F11]) HSP 1 Score: 78.6 bits (192), Expect = 3.000e-11 Identity = 51/115 (44.35%), Postives = 64/115 (55.65%), Query Frame = 0 Query: 25 LLSPETKEGASEKGKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALP 140 +L PET++ + + DVVLVDA CS +G RR+ RW L P D + L A Q ALL +A K GGRLV+ATCS L ENE +A FLE+ D +RALP Sbjct: 294 VLDPETRKWLK---RRKASFDVVLVDAPCSGTGTWRRNPDARWKLTP-DTISALNAEQSALLDRAAALVKPGGRLVYATCSLLPAENEAQIAAFLERRDD----------YRALP 394
BLAST of NO06G03790 vs. NCBI_GenBank
Match: EKE10348.1 (hypothetical protein ACD_16C00051G0004 [uncultured bacterium] >OFW67912.1 hypothetical protein A2X70_06235 [Alphaproteobacteria bacterium GWC2_42_16] >OFW73747.1 hypothetical protein A2Z80_01305 [Alphaproteobacteria bacterium GWA2_41_27] >OFW82157.1 hypothetical protein A3E50_04945 [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_42_100] >OFW85186.1 hypothetical protein A2W06_02335 [Alphaproteobacteria bacterium RBG_16_42_14] >OFW91340.1 hypothetical protein A3C41_08055 [Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_30] >OFW93200.1 hypothetical protein A2W46_05345 [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_42_13] >OFX05865.1 hypothetical protein A3H46_03630 [Alphaproteobacteria bacterium RIFCSPLOWO2_02_FULL_43_54] >OFX07967.1 hypothetical protein A3G78_00550 [Alphaproteobacteria bacterium RIFCSPLOWO2_12_FULL_42_29]) HSP 1 Score: 78.2 bits (191), Expect = 3.900e-11 Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = 0 Query: 4 ARRAGMWGLVRVLESEEALNVLLSPETKE--GASEK--GKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123 A +W L R E + V + E +E G ++K +++ R D VLVDA CS SG RR+ +WTL P+D L L A+Q LLA A K GG LV+ATCS EENE+V+A FL+ + Sbjct: 269 ATDTALWRLKRTKERLKRAGV-FNVEIREISGMTDKWLKRQKERFDHVLVDAPCSGSGTWRRNPDKKWTLTPKD-LSELSALQQVLLAGAAPLVKPGGSLVYATCSLFYEENEDVVATFLKDH 389 The following BLAST results are available for this feature:
BLAST of NO06G03790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G03790 ID=NO06G03790|Name=NO06G03790|organism=Nannochloropsis oceanica|type=gene|length=1457bpback to top protein sequence of NO06G03790.1 >NO06G03790.1-protein ID=NO06G03790.1-protein|Name=NO06G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bpback to top Synonyms
Publications
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