NO06G03680, NO06G03680 (gene) Nannochloropsis oceanica

Overview
NameNO06G03680
Unique NameNO06G03680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length255
Alignment locationchr6:1015542..1015796 +

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Properties
Property NameValue
DescriptionDiphthamide biosynthesis protein 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1015542..1015796 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036671Znf_DHP_sf
IPR007872Znf_DHP
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
BLAST of NO06G03680 vs. NCBI_GenBank
Match: EWM26353.1 (diphthamide biosynthesis protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 115.9 bits (289), Expect = 6.000e-23
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 0
Query:    1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDDAGGSTGAGVAVSVH 85
            MSIYEEV XXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVY+EE+LPPLK  +AGGS GAG+AV+VH
Sbjct:   61 MSIYEEVXXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPLKASEAGGSAGAGMAVAVH 144          
BLAST of NO06G03680 vs. NCBI_GenBank
Match: XP_002289077.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED94513.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.9 bits (198), Expect = 2.100e-12
Identity = 39/70 (55.71%), Postives = 43/70 (61.43%), Query Frame = 0
Query:    1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDD 71
            MSIYEEVE                   GDKF ITL  LWDGED+A CPSCTLRI ++Y+E  LPPL PDD
Sbjct:    1 MSIYEEVEFEDLDYDPLTQTYTYPCPCGDKFSITLEALWDGEDIATCPSCTLRIEIIYEESDLPPL-PDD 69          
BLAST of NO06G03680 vs. NCBI_GenBank
Match: OQR97555.1 (diphthamide biosynthesis protein [Achlya hypogyna])

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-11
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 0
Query:    1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDDAGG 74
            MS+Y+EVE                   GDKF I L EL+DGED+A CPSC+L IR+++DE++LPPL+ DD  G
Sbjct:    1 MSVYDEVEIEDMEFDEAEQIYYYPCPCGDKFFIGLDELYDGEDIASCPSCSLTIRIIFDEDALPPLREDDEDG 73          
BLAST of NO06G03680 vs. NCBI_GenBank
Match: EJK44901.1 (hypothetical protein THAOC_36525 [Thalassiosira oceanica])

HSP 1 Score: 75.1 bits (183), Expect = 1.200e-10
Identity = 34/67 (50.75%), Postives = 40/67 (59.70%), Query Frame = 0
Query:    1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLK 68
            MSIYEE+E                   GD F I+L  LWDGED+A CPSCTLRI ++YDEE LP L+
Sbjct:    1 MSIYEEIEFEDLNYDPKTQMYTYPCPCGDMFSISLEALWDGEDIATCPSCTLRIEIIYDEEDLPELR 67          
BLAST of NO06G03680 vs. NCBI_GenBank
Match: GAX94343.1 (Hypothetical protein PINS_002247 [Pythium insidiosum])

HSP 1 Score: 73.6 bits (179), Expect = 3.400e-10
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 0
Query:    1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPL 67
            MS+Y+EVE                  XGDKF ITLAEL+DGED+A CPSC+L +RV++DE++LP L
Sbjct:  304 MSVYDEVEIEDMDFNAEEQVYYYPCPXGDKFFITLAELYDGEDIATCPSCSLTLRVIFDEDALPEL 369          
BLAST of NO06G03680 vs. NCBI_GenBank
Match: XP_002176981.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51444.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 72.4 bits (176), Expect = 7.600e-10
Identity = 35/63 (55.56%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESL 64
            MSIYEEVE                   GDKF ITL ELW+GEDVA CPSCTLRI V+++EE L
Sbjct:    1 MSIYEEVEIEDMIFDEDELVYTYPCPCGDKFRITLEELWEGEDVAKCPSCTLRIMVIFEEEDL 63          
BLAST of NO06G03680 vs. NCBI_GenBank
Match: GAX12534.1 (diphthamide biosynthesis protein 3 [Fistulifera solaris])

HSP 1 Score: 70.5 bits (171), Expect = 2.900e-9
Identity = 35/64 (54.69%), Postives = 38/64 (59.38%), Query Frame = 0
Query:    1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLP 65
            MSIYEEVE                   GDKF ITL EL DGED+A CPSCTLRI V+Y+E  LP
Sbjct:    1 MSIYEEVEIEDMFFDEEQLVYTYPCPCGDKFRITLEELHDGEDIAKCPSCTLRIMVIYEEADLP 64          
BLAST of NO06G03680 vs. NCBI_GenBank
Match: CBJ31875.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.1 bits (170), Expect = 3.800e-9
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 0
Query:    3 IYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDD 71
            +YEEV                    GDKF I+L +L+DGED+APCPSCTL+I+V+++E  LP L+P++
Sbjct:    5 VYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEE 72          
BLAST of NO06G03680 vs. NCBI_GenBank
Match: XP_009516699.1 (hypothetical protein PHYSODRAFT_474557 [Phytophthora sojae] >EGZ29424.1 hypothetical protein PHYSODRAFT_474557 [Phytophthora sojae])

HSP 1 Score: 69.7 bits (169), Expect = 4.900e-9
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 0
Query:    2 SIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDD 71
            ++Y+EVE                   GD+F I L EL+DGED+A CPSC+L IRV++DEE+LP LK ++
Sbjct:    3 AVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVIFDEETLPELKEEE 71          
BLAST of NO06G03680 vs. NCBI_GenBank
Match: XP_008913486.1 (hypothetical protein PPTG_17582 [Phytophthora parasitica INRA-310] >ETI34813.1 hypothetical protein F443_18751 [Phytophthora parasitica P1569] >ETK75098.1 hypothetical protein L915_18235 [Phytophthora parasitica] >ETL28536.1 hypothetical protein L916_18141 [Phytophthora parasitica] >ETL81791.1 hypothetical protein L917_17955 [Phytophthora parasitica] >ETM34995.1 hypothetical protein L914_18041 [Phytophthora parasitica] >ETN01159.1 hypothetical protein PPTG_17582 [Phytophthora parasitica INRA-310] >ETO63554.1 hypothetical protein F444_18751 [Phytophthora parasitica P1976] >ETP04652.1 hypothetical protein F441_18614 [Phytophthora parasitica CJ01A1] >ETP32800.1 hypothetical protein F442_18567 [Phytophthora parasitica P10297])

HSP 1 Score: 68.6 bits (166), Expect = 1.100e-8
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 0
Query:    2 SIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDD 71
            S+Y+EVE                   GD+F I L EL+DGED+A CPSC+L IRV++DEE+LP L  ++
Sbjct:    3 SVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVIFDEENLPELAEEE 71          
The following BLAST results are available for this feature:
BLAST of NO06G03680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26353.16.000e-2389.29diphthamide biosynthesis protein 3 [Nannochloropsi... [more]
XP_002289077.12.100e-1255.71predicted protein, partial [Thalassiosira pseudona... [more]
OQR97555.11.100e-1147.95diphthamide biosynthesis protein [Achlya hypogyna][more]
EJK44901.11.200e-1050.75hypothetical protein THAOC_36525 [Thalassiosira oc... [more]
GAX94343.13.400e-1051.52Hypothetical protein PINS_002247 [Pythium insidios... [more]
XP_002176981.17.600e-1055.56predicted protein, partial [Phaeodactylum tricornu... [more]
GAX12534.12.900e-954.69diphthamide biosynthesis protein 3 [Fistulifera so... [more]
CBJ31875.13.800e-944.12conserved unknown protein [Ectocarpus siliculosus][more]
XP_009516699.14.900e-944.93hypothetical protein PHYSODRAFT_474557 [Phytophtho... [more]
XP_008913486.11.100e-844.93hypothetical protein PPTG_17582 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000110NSK000110Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03680.1NO06G03680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597743gene_6696Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100031g13gene4164Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03680.1NO06G03680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03680 ID=NO06G03680|Name=NO06G03680|organism=Nannochloropsis oceanica|type=gene|length=255bp
ATGAGCATCTACGAAGAGGTGGAGATCGAGGACATGGAGTTTGAAGAAGA
TGAGCAACAATACACCTACCCGTGTCCATGTGGGGATAAGTTTGTCATTA
CTCTCGCAGAGCTGTGGGATGGGGAGGACGTGGCGCCTTGCCCCAGCTGC
ACCCTCCGCATCCGGGTGGTGTACGATGAGGAGTCCTTGCCGCCACTAAA
GCCCGACGATGCAGGGGGATCGACGGGGGCCGGTGTGGCTGTGTCGGTGC
ACTAA
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protein sequence of NO06G03680.1

>NO06G03680.1-protein ID=NO06G03680.1-protein|Name=NO06G03680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MSIYEEVEIEDMEFEEDEQQYTYPCPCGDKFVITLAELWDGEDVAPCPSC
TLRIRVVYDEESLPPLKPDDAGGSTGAGVAVSVH*
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Synonyms
Publications