NO06G03680, NO06G03680 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G03680 vs. NCBI_GenBank
Match: EWM26353.1 (diphthamide biosynthesis protein 3 [Nannochloropsis gaditana]) HSP 1 Score: 115.9 bits (289), Expect = 6.000e-23 Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 0 Query: 1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDDAGGSTGAGVAVSVH 85 MSIYEEV XXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVY+EE+LPPLK +AGGS GAG+AV+VH Sbjct: 61 MSIYEEVXXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPLKASEAGGSAGAGMAVAVH 144
BLAST of NO06G03680 vs. NCBI_GenBank
Match: XP_002289077.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED94513.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 80.9 bits (198), Expect = 2.100e-12 Identity = 39/70 (55.71%), Postives = 43/70 (61.43%), Query Frame = 0 Query: 1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDD 71 MSIYEEVE GDKF ITL LWDGED+A CPSCTLRI ++Y+E LPPL PDD Sbjct: 1 MSIYEEVEFEDLDYDPLTQTYTYPCPCGDKFSITLEALWDGEDIATCPSCTLRIEIIYEESDLPPL-PDD 69
BLAST of NO06G03680 vs. NCBI_GenBank
Match: OQR97555.1 (diphthamide biosynthesis protein [Achlya hypogyna]) HSP 1 Score: 78.6 bits (192), Expect = 1.100e-11 Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 0 Query: 1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDDAGG 74 MS+Y+EVE GDKF I L EL+DGED+A CPSC+L IR+++DE++LPPL+ DD G Sbjct: 1 MSVYDEVEIEDMEFDEAEQIYYYPCPCGDKFFIGLDELYDGEDIASCPSCSLTIRIIFDEDALPPLREDDEDG 73
BLAST of NO06G03680 vs. NCBI_GenBank
Match: EJK44901.1 (hypothetical protein THAOC_36525 [Thalassiosira oceanica]) HSP 1 Score: 75.1 bits (183), Expect = 1.200e-10 Identity = 34/67 (50.75%), Postives = 40/67 (59.70%), Query Frame = 0 Query: 1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLK 68 MSIYEE+E GD F I+L LWDGED+A CPSCTLRI ++YDEE LP L+ Sbjct: 1 MSIYEEIEFEDLNYDPKTQMYTYPCPCGDMFSISLEALWDGEDIATCPSCTLRIEIIYDEEDLPELR 67
BLAST of NO06G03680 vs. NCBI_GenBank
Match: GAX94343.1 (Hypothetical protein PINS_002247 [Pythium insidiosum]) HSP 1 Score: 73.6 bits (179), Expect = 3.400e-10 Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 0 Query: 1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPL 67 MS+Y+EVE XGDKF ITLAEL+DGED+A CPSC+L +RV++DE++LP L Sbjct: 304 MSVYDEVEIEDMDFNAEEQVYYYPCPXGDKFFITLAELYDGEDIATCPSCSLTLRVIFDEDALPEL 369
BLAST of NO06G03680 vs. NCBI_GenBank
Match: XP_002176981.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51444.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 72.4 bits (176), Expect = 7.600e-10 Identity = 35/63 (55.56%), Postives = 39/63 (61.90%), Query Frame = 0 Query: 1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESL 64 MSIYEEVE GDKF ITL ELW+GEDVA CPSCTLRI V+++EE L Sbjct: 1 MSIYEEVEIEDMIFDEDELVYTYPCPCGDKFRITLEELWEGEDVAKCPSCTLRIMVIFEEEDL 63
BLAST of NO06G03680 vs. NCBI_GenBank
Match: GAX12534.1 (diphthamide biosynthesis protein 3 [Fistulifera solaris]) HSP 1 Score: 70.5 bits (171), Expect = 2.900e-9 Identity = 35/64 (54.69%), Postives = 38/64 (59.38%), Query Frame = 0 Query: 1 MSIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLP 65 MSIYEEVE GDKF ITL EL DGED+A CPSCTLRI V+Y+E LP Sbjct: 1 MSIYEEVEIEDMFFDEEQLVYTYPCPCGDKFRITLEELHDGEDIAKCPSCTLRIMVIYEEADLP 64
BLAST of NO06G03680 vs. NCBI_GenBank
Match: CBJ31875.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 70.1 bits (170), Expect = 3.800e-9 Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 0 Query: 3 IYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDD 71 +YEEV GDKF I+L +L+DGED+APCPSCTL+I+V+++E LP L+P++ Sbjct: 5 VYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEE 72
BLAST of NO06G03680 vs. NCBI_GenBank
Match: XP_009516699.1 (hypothetical protein PHYSODRAFT_474557 [Phytophthora sojae] >EGZ29424.1 hypothetical protein PHYSODRAFT_474557 [Phytophthora sojae]) HSP 1 Score: 69.7 bits (169), Expect = 4.900e-9 Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 0 Query: 2 SIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDD 71 ++Y+EVE GD+F I L EL+DGED+A CPSC+L IRV++DEE+LP LK ++ Sbjct: 3 AVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVIFDEETLPELKEEE 71
BLAST of NO06G03680 vs. NCBI_GenBank
Match: XP_008913486.1 (hypothetical protein PPTG_17582 [Phytophthora parasitica INRA-310] >ETI34813.1 hypothetical protein F443_18751 [Phytophthora parasitica P1569] >ETK75098.1 hypothetical protein L915_18235 [Phytophthora parasitica] >ETL28536.1 hypothetical protein L916_18141 [Phytophthora parasitica] >ETL81791.1 hypothetical protein L917_17955 [Phytophthora parasitica] >ETM34995.1 hypothetical protein L914_18041 [Phytophthora parasitica] >ETN01159.1 hypothetical protein PPTG_17582 [Phytophthora parasitica INRA-310] >ETO63554.1 hypothetical protein F444_18751 [Phytophthora parasitica P1976] >ETP04652.1 hypothetical protein F441_18614 [Phytophthora parasitica CJ01A1] >ETP32800.1 hypothetical protein F442_18567 [Phytophthora parasitica P10297]) HSP 1 Score: 68.6 bits (166), Expect = 1.100e-8 Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 0 Query: 2 SIYEEVEXXXXXXXXXXXXXXXXXXXGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDD 71 S+Y+EVE GD+F I L EL+DGED+A CPSC+L IRV++DEE+LP L ++ Sbjct: 3 SVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVIFDEENLPELAEEE 71 The following BLAST results are available for this feature:
BLAST of NO06G03680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G03680 ID=NO06G03680|Name=NO06G03680|organism=Nannochloropsis oceanica|type=gene|length=255bpback to top protein sequence of NO06G03680.1 >NO06G03680.1-protein ID=NO06G03680.1-protein|Name=NO06G03680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=85bpback to top Synonyms
Publications
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