NO06G03580, NO06G03580 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G03580
Unique Name	NO06G03580
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3290
Alignment location	chr6:982240..985529 -

Link to JBrowse

Properties


Property Name	Value
Description	ATPase, V0/A0 complex, subunit C/D

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:982240..985529 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015991	ATP hydrolysis coupled proton transport
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0033179	proton-transporting V-type ATPase, V0 domain
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	proton transmembrane transporter activity
GO:0005215	transporter activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036079	ATPase_su_C-like
IPR016727	ATPase_V0-cplx_dsu
IPR002843	ATPase_V0-cplx_csu/dsu

Homology

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BLAST of NO06G03580 vs. NCBI_GenBank
Match: XP_009033412.1 (hypothetical protein AURANDRAFT_59824 [Aureococcus anophagefferens] >EGB12374.1 hypothetical protein AURANDRAFT_59824 [Aureococcus anophagefferens])

HSP 1 Score: 523.9 bits (1348), Expect = 4.400e-145
Identity = 245/372 (65.86%), Postives = 313/372 (84.14%), Query Frame = 0

Query:   17 NLDHGFPEAVVRGFRSGFLTDYDYHHLTQCESLEDMKMNLQETDYDQFMANEQHIIPVTFRDKALQKLVQEMEFLRAHAVEPLATFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCHPLGLFKESTMRSIPAFEASPKGYADLYQTVLIDTPVGPYFSQYLQDNAEQLSDASEMRNILEEVQIEVIKNSLHKLYLEDFYRVCQAIGGETAEFMGHLIKLRADRMAVNIAVNSIGTPLNEPAMRST-RHKLFPAVGYLYPAGTARLAEVTDEGQMEGALSAVPEYQKLYA--SIAGAKDKTLEDLFYEKDVQALEVAFEGQMHFAPFYAYVKLKQQEIRNLVWIAECILQGQKDEINKFVPIFSDSSPWR 386
            N DHG  EA+ RGFR+GFL+D DYHHLTQCESLED+KMNL ETDYD F+ANE  + P    + A +K+V E +FLRA AVEPLATFLDYI++E+MIDNVMLLLKGT+SGR   ELI+QCHPLG+F++STMRSIP FE SPKGYADLYQTVL+DTPVGPYFS++LQ+++E+L+ A+E+RN+LEEV++E+IK+SL KLYLEDFY  C ++GG+TAE MG ++K RAD+ A+NI +NS GTPLNEP+MRST R +L+P++G+LYPAGT +LA+V DEGQ+  A+S  P Y++++A        D++++D FYE++VQ LE+AFEGQMHF  +YAYVKLK+QEIRNLVWI+ECI+Q QKDEINKFVP FS ++PWR
Sbjct:    8 NRDHGMTEALCRGFRTGFLSDTDYHHLTQCESLEDVKMNLAETDYDAFLANEASVSPAVILECATKKMVAEFQFLRAQAVEPLATFLDYITFEYMIDNVMLLLKGTISGRDVGELIEQCHPLGMFRDSTMRSIPTFENSPKGYADLYQTVLVDTPVGPYFSRFLQESSEKLTSAAEVRNVLEEVEMEIIKHSLMKLYLEDFYYFCCSVGGDTAEIMGEILKARADQRAINITLNSFGTPLNEPSMRSTDRKRLYPSIGFLYPAGTEKLADVADEGQLGAAVSHFPVYREIWAVHQNESVDDRSIDDAFYEREVQMLELAFEGQMHFGIYYAYVKLKEQEIRNLVWISECIVQQQKDEINKFVPCFSSTAPWR 379

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BLAST of NO06G03580 vs. NCBI_GenBank
Match: CBN76508.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 503.1 bits (1294), Expect = 8.100e-139
Identity = 237/394 (60.15%), Postives = 314/394 (79.70%), Query Frame = 0

Query:    2 SVASDVMEAGGLGTFNLDHGFPEAVVRGFRSGFLTDYDYHHLTQCESLEDMKMNLQETDYDQFMANEQHIIPVTFRDKALQKLVQEMEFLRAHAVEPLATFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCHPLGLFKESTMRSIPAFEASPKGYADLYQTVLIDTPVGPYFSQYLQDNAEQLSDASEMRNILEEVQIEVIKNSLHKLYLEDFYRVCQAIGGETAEFMGHLIKLRADRMAVNIAVNSIGTPLNEPAMRST-RHKLFPAVGYLYPAGTARLAEVTDEGQMEGALSAVPEYQKLYA--SIAGAKDKTLEDLFYEKDVQALEVAFEGQMHFAPFYAYVKLKQQEIRNLVWIAECILQGQKDEINKFVPIFSDSSPWRLAGKLNR 393
            SVA D    G    FN+ HGFPE +VRG+R+GFLTD DY++L QCESLED+K+NLQETDYDQF++ E  + P   +++A +KLV E  FL+A A EPL+TFL+YI+YE+MI+N+M+LLKGTLSGR  NELI+QCHP+GLFK+STMR IPAFEASPKGYADLYQTVL+DTP+GPYFSQ+L+   E+L++A+++R+ILEEV+IE+IKNSL KLYLEDF+R C+++GG+T+  M  L++ RADR A+NI +NS G PLNEP+MRST R +L+PA+G LYP  T    EV DE Q+   L   P Y+ ++A        DK+++D F+E+DV  LE+AF+GQMHF PFYAYVKLK+QEIRNLVWI+ECI+Q Q+DEI K++P+FS+++ W++A +  R
Sbjct:    6 SVAED---PGDFHIFNVHHGFPEGLVRGYRTGFLTDMDYNNLCQCESLEDVKLNLQETDYDQFLSQENKVTPAALQERATKKLVVEFNFLKAQAQEPLSTFLEYITYEYMIENIMMLLKGTLSGRDVNELIEQCHPMGLFKDSTMRLIPAFEASPKGYADLYQTVLVDTPIGPYFSQFLEQQQERLTNAAQVRDILEEVEIEIIKNSLMKLYLEDFHRFCKSVGGDTSTVMCELLEARADRGAINITLNSFGGPLNEPSMRSTDRRRLYPAIGTLYPEATNLFQEVGDESQLAAVLDMYPVYRGIWAVHQNEAYGDKSIDDAFFERDVDMLELAFQGQMHFGPFYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFSENASWKVARRAGR 396

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BLAST of NO06G03580 vs. NCBI_GenBank
Match: GAY06361.1 (H or Na translocating Ftype putative, partial [Pythium insidiosum])

HSP 1 Score: 492.3 bits (1266), Expect = 1.400e-135
Identity = 239/385 (62.08%), Postives = 301/385 (78.18%), Query Frame = 0

Query:    7 VMEAGGLGTFNLDHGFPEAVVRGFRSGFLTDYDYHHLTQCESLEDMKMNLQETDYDQFMANEQHII-PVTFRDKALQKLVQEMEFLRAHAVEPLATFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCHPLGLFKESTMRSIPAFEASPKGYADLYQTVLIDTPVGPYFSQYLQDNA--EQLSDASEMRNILEEVQIEVIKNSLHKLYLEDFYRVCQAIGGETAEFMGHLIKLRADRMAVNIAVNSIGTPLNEPAMR-STRHKLFPAVGYLYPAGTARLAEVTDEGQMEGALSAVPEYQKLYA--SIAGAKDKTLEDLFYEKDVQALEVAFEGQMHFAPFYAYVKLKQQEIRNLVWIAECILQGQKDEINKFVPIFSDSSPWR 386
            V+ AG + +FN+ HGF EA+VRGFRSGFL D DYHHLTQCE+LED+K+NLQETDYDQFMA+E  ++ P   +     KLVQE  FLRA A EPL  FLDYI+YE+MIDNV+LLLKGTL+GR  NELI Q HPLG F +S MRSI AFE + KGY+DLY+TVLIDTP+G YFSQ+L+++A  +++   SE+RN+LEEVQ+E+IKNS+ KL+LEDFY  CQ +GG+TA  MG ++K RADRMA+NI +NS GTPLNEPAMR S R  L+P++GYLYP  T RLAE  DE  +  AL   P Y+K++      G  +K+++D FYE+DVQ  E+AF+ QMHFA FYAYVKLK+QE+RN+VWI ECI+Q Q+D IN F+PIFSD++PWR
Sbjct:  427 VLPAGDISSFNIQHGFVEALVRGFRSGFLDDVDYHHLTQCETLEDVKLNLQETDYDQFMADESGVVSPSLIQAGTTNKLVQEFLFLRAQAAEPLGQFLDYITYEYMIDNVILLLKGTLNGRDVNELIPQLHPLGKFDDSIMRSICAFEPNSKGYSDLYETVLIDTPIGTYFSQFLEESASGDRMDGTSEVRNVLEEVQMELIKNSMLKLWLEDFYNFCQKVGGDTATMMGEILKARADRMAINITLNSFGTPLNEPAMRISDRKPLYPSIGYLYPEATERLAEAGDESSLGAALDPYPIYRKIWEVHQSQGVDNKSIDDAFYERDVQMGELAFQSQMHFACFYAYVKLKEQEVRNIVWICECIVQKQRDAINNFIPIFSDNAPWR 811

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BLAST of NO06G03580 vs. NCBI_GenBank
Match: GAY03534.1 (leucine-tRNA ligase [Pythium insidiosum])

HSP 1 Score: 492.3 bits (1266), Expect = 1.400e-135
Identity = 239/385 (62.08%), Postives = 301/385 (78.18%), Query Frame = 0

Query:    7 VMEAGGLGTFNLDHGFPEAVVRGFRSGFLTDYDYHHLTQCESLEDMKMNLQETDYDQFMANEQHII-PVTFRDKALQKLVQEMEFLRAHAVEPLATFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCHPLGLFKESTMRSIPAFEASPKGYADLYQTVLIDTPVGPYFSQYLQDNA--EQLSDASEMRNILEEVQIEVIKNSLHKLYLEDFYRVCQAIGGETAEFMGHLIKLRADRMAVNIAVNSIGTPLNEPAMR-STRHKLFPAVGYLYPAGTARLAEVTDEGQMEGALSAVPEYQKLYA--SIAGAKDKTLEDLFYEKDVQALEVAFEGQMHFAPFYAYVKLKQQEIRNLVWIAECILQGQKDEINKFVPIFSDSSPWR 386
            V+ AG + +FN+ HGF EA+VRGFRSGFL D DYHHLTQCE+LED+K+NLQETDYDQFMA+E  ++ P   +     KLVQE  FLRA A EPL  FLDYI+YE+MIDNV+LLLKGTL+GR  NELI Q HPLG F +S MRSI AFE + KGY+DLY+TVLIDTP+G YFSQ+L+++A  +++   SE+RN+LEEVQ+E+IKNS+ KL+LEDFY  CQ +GG+TA  MG ++K RADRMA+NI +NS GTPLNEPAMR S R  L+P++GYLYP  T RLAE  DE  +  AL   P Y+K++      G  +K+++D FYE+DVQ  E+AF+ QMHFA FYAYVKLK+QE+RN+VWI ECI+Q Q+D IN F+PIFSD++PWR
Sbjct:  919 VLPAGDISSFNIQHGFVEALVRGFRSGFLDDVDYHHLTQCETLEDVKLNLQETDYDQFMADESGVVSPSLIQAGTTNKLVQEFLFLRAQAAEPLGQFLDYITYEYMIDNVILLLKGTLNGRDVNELIPQLHPLGKFDDSIMRSICAFEPNSKGYSDLYETVLIDTPIGTYFSQFLEESASGDRMDGTSEVRNVLEEVQMELIKNSMLKLWLEDFYNFCQKVGGDTATMMGEILKARADRMAINITLNSFGTPLNEPAMRISDRKPLYPSIGYLYPEATERLAEAGDESSLGAALDPYPIYRKIWEVHQSQGVDNKSIDDAFYERDVQMGELAFQSQMHFACFYAYVKLKEQEVRNIVWICECIVQKQRDAINNFIPIFSDNAPWR 1303

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BLAST of NO06G03580 vs. NCBI_GenBank
Match: EJK75011.1 (hypothetical protein THAOC_03282 [Thalassiosira oceanica])

HSP 1 Score: 486.9 bits (1252), Expect = 6.000e-134
Identity = 234/379 (61.74%), Postives = 300/379 (79.16%), Query Frame = 0

Query:   13 LGTFNLDHGFPEAVVRGFRSGFLTDYDYHHLTQCESLEDMKMNLQETDYDQFMANEQHIIPVTFRDKALQKLVQEMEFLRAHAVEPLATFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCHPLGLFKESTMRSIPAFEASPKGYADLYQTVLIDTPVGPYFSQYLQDNAEQLSDASEMRNILEEVQIEVIKNSLHKLYLEDFYRVCQAIGGETAEFMGHLIKLRADRMAVNIAVNSIGTPLNEPAMR-STRHKLFPAVGYLYPAGTARLAEVTDEGQMEGALSAVPEYQKLY-ASIAGAKDKTLEDLFYEKDVQALEVAFEGQMHFAPFYAYVKLKQQEIRNLVWIAECILQGQKDEINKFVPIFSDSSPWRLAGK 390
            + TFN+ HG  E++VRG RS FL D DYHHLTQCE+L+D+++NL ETDY+  +A+   +IP   +  A+ KLV E +FLR  A++PLA FLD+I+YE+MI+NVMLLLKGTLSGR  NELI QCHPLG+FKESTMRSIP FE++P+GY DLYQTVL+DTPVGPYFS +LQ+ A +     E+ N+LEEV+IE+IK+SL K ++EDF +   ++GGETA  MG L+K+RAD  A+NI +NS GTPLNEPAMR S R +L+PA+G+LYPAGTA LA+V DE ++   L   P+Y  ++    AG++ K+++D FYE+DVQ LE+AFEGQMHFA FYAYVKLK+QEIRNLVWI+ECILQ QKDEINKFVP+FS +S WR + K
Sbjct:    1 MATFNILHGHVESLVRGMRSSFLADADYHHLTQCETLDDVRLNLSETDYEDALADMNALIPTGLQKAAVDKLVTEFQFLRTQAIDPLAKFLDFITYEYMIENVMLLLKGTLSGRDINELIAQCHPLGMFKESTMRSIPTFESTPRGYQDLYQTVLVDTPVGPYFSMFLQETAGR----GEVSNVLEEVEIEIIKSSLIKYWIEDFAKYVDSLGGETATIMGELLKVRADTNAINITLNSFGTPLNEPAMRASDRKRLYPALGHLYPAGTAMLADVGDEDELGRVLELFPQYSSIWNIHAAGSEGKSIDDAFYERDVQMLELAFEGQMHFASFYAYVKLKEQEIRNLVWISECILQSQKDEINKFVPVFSFNSGWRASSK 375

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BLAST of NO06G03580 vs. NCBI_GenBank
Match: OWZ18202.1 (H - or Na -translocating F-type, V-type and A-type ATPase (F-ATPase) [Phytophthora megakarya])

HSP 1 Score: 486.9 bits (1252), Expect = 6.000e-134
Identity = 240/389 (61.70%), Postives = 299/389 (76.86%), Query Frame = 0

Query:    7 VMEAGGLGTFNLDHGFPEAVVRGFRSGFLTDYDYHHLTQCESLEDMKMNLQETDYDQFMANEQH--IIPVTFRDKALQKLVQEMEFLRAHAVEPLATFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCHPLGLFKESTMRSIPAFEASPKGYADLYQTVLIDTPVGPYFSQYLQDNA--EQLSDASEMRNILEEVQIEVIKNSLHKLYLEDFYRVCQAIGGETAEFMGHLIKLRADRMAVNIAVNSIGTPLNEPAMR-STRHKLFPAVGYLYPAGTARLAEVTDEGQMEGALSAVPEYQKLYA--SIAGAKDKTLEDLFYEKDVQALEVAFEGQMHFAPFYAYVKLKQQEIRNLVWIAECILQGQKDEINKFVPIFSDSSPWRLAG 389
            VM AGG+ TFN+ HG+ E +VRGFRSGFL D DYHHLTQCESLED+K+NLQETDYDQF+A+E    I P   +     KLV+E  FLRA A+EPL  FLD+I+YE+MIDNV+LLLKGTL+GR  NELI Q HPLG F ES MRSI  FE + KGY+DLY+TVLIDTP+G YFSQ+L+++A  +++   S++RN+LEEVQ+E+IKNS+ KL+LEDFY VCQ IG ET   MG ++K RADR+A+NI +NS GTPLNEPAMR S R  L+P++G LYP  TA LAE  DE  +  AL + P Y+K++      G   K+++D FYE+DVQ  E+AF+ QMHFA FYAYVKLK+QE+RNLVWI ECI+Q Q+D IN F+PIFSDS+PWR  G
Sbjct:    2 VMAAGGISTFNIQHGYVEGLVRGFRSGFLDDVDYHHLTQCESLEDVKLNLQETDYDQFLADESSGTISPGLIQAGTTNKLVEEFHFLRAQAMEPLGQFLDFITYEYMIDNVILLLKGTLNGRDVNELIGQLHPLGKFDESIMRSICTFEPNAKGYSDLYETVLIDTPIGTYFSQFLEESAGGDRMEGTSDVRNVLEEVQMELIKNSMLKLWLEDFYNVCQEIGDETGIIMGEILKARADRIAINITLNSFGTPLNEPAMRISDRKPLYPSIGSLYPDATALLAEAGDESALGSALDSFPVYRKIWEVHQGEGVDSKSIDDAFYERDVQMAELAFQSQMHFACFYAYVKLKEQEVRNLVWICECIVQNQRDAINNFIPIFSDSAPWRGKG 390

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BLAST of NO06G03580 vs. NCBI_GenBank
Match: XP_002185659.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65129.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 485.3 bits (1248), Expect = 1.700e-133
Identity = 230/387 (59.43%), Postives = 305/387 (78.81%), Query Frame = 0

Query:    1 MSVASDVMEAGGLGTFNLDHGFPEAVVRGFRSGFLTDYDYHHLTQCESLEDMKMNLQETDYDQFMANEQHIIPVTFRDKALQKLVQEMEFLRAHAVEPLATFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCHPLGLFKESTMRSIPAFEASPKGYADLYQTVLIDTPVGPYFSQYLQDNAEQLSDASEMRNILEEVQIEVIKNSLHKLYLEDFYRVCQAIGGETAEFMGHLIKLRADRMAVNIAVNSIGTPLNEPAMRST-RHKLFPAVGYLYPAGTARLAEVTDEGQMEGALSAVPEYQKLYA-SIAGAKDKTLEDLFYEKDVQALEVAFEGQMHFAPFYAYVKLKQQEIRNLVWIAECILQGQKDEINKFVPIFSDSSPWR 386
            M   S    AG + TFN+ HGFPEA+VRG RS FL+D DYHHLTQCE+L+D+++NL E+DY   +A+   + P + +  A++KLV E ++LR+ +VEPL+TFLD+I++E+MI+NVMLLLKG LSGR  NELI+QCHPLG+FKESTMRSIP FE S +GYADLYQTVL+DTPVGPYF+ +LQ+++E      + RN+LEEV+IE+IK+SL K +LEDFY+    IGG+T++ MG L+K+RAD  A+NI +NS GTPLNEP+MRS+ R +L+P+VG+LYPAGT  L +V DE ++   L   P+Y  +++   +G  DK+++D FYE+DVQ LE+AFE Q H+A FYAYVKLK+QEIRN+VW++ECILQ QKDEINKFVP+FS  SPWR
Sbjct:    1 MVTPSPKASAGDIATFNVLHGFPEALVRGMRSSFLSDADYHHLTQCETLDDVRLNLTESDYSDALADSATMTPASLQKAAIEKLVTEFQYLRSQSVEPLSTFLDFITFEYMIENVMLLLKGALSGRDINELIEQCHPLGMFKESTMRSIPTFENSSRGYADLYQTVLVDTPVGPYFAMFLQESSEHRD--GDSRNVLEEVEIEIIKSSLIKYWLEDFYQFAMKIGGDTSQIMGELLKVRADTNAINITLNSFGTPLNEPSMRSSDRKRLYPSVGHLYPAGTTMLIDVQDEDELGRVLELFPQYSAIWSIHASGNGDKSIDDAFYERDVQQLELAFESQFHYAVFYAYVKLKEQEIRNMVWVSECILQQQKDEINKFVPVFSYHSPWR 385

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BLAST of NO06G03580 vs. NCBI_GenBank
Match: XP_008906582.1 (hypothetical protein PPTG_12116 [Phytophthora parasitica INRA-310] >ETI45855.1 hypothetical protein F443_09649 [Phytophthora parasitica P1569] >ETK85858.1 hypothetical protein L915_09444 [Phytophthora parasitica] >ETL39285.1 hypothetical protein L916_09347 [Phytophthora parasitica] >ETL92395.1 hypothetical protein L917_09282 [Phytophthora parasitica] >ETM45704.1 hypothetical protein L914_09308 [Phytophthora parasitica] >ETN08294.1 hypothetical protein PPTG_12116 [Phytophthora parasitica INRA-310] >ETO74581.1 hypothetical protein F444_09716 [Phytophthora parasitica P1976] >ETP15730.1 hypothetical protein F441_09577 [Phytophthora parasitica CJ01A1] >ETP43773.1 hypothetical protein F442_09557 [Phytophthora parasitica P10297] >KUF92406.1 WRKY transcription factor 19 [Phytophthora nicotianae])

HSP 1 Score: 482.6 bits (1241), Expect = 1.100e-132
Identity = 237/389 (60.93%), Postives = 299/389 (76.86%), Query Frame = 0

Query:    7 VMEAGGLGTFNLDHGFPEAVVRGFRSGFLTDYDYHHLTQCESLEDMKMNLQETDYDQFMANEQH--IIPVTFRDKALQKLVQEMEFLRAHAVEPLATFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCHPLGLFKESTMRSIPAFEASPKGYADLYQTVLIDTPVGPYFSQYLQDNA--EQLSDASEMRNILEEVQIEVIKNSLHKLYLEDFYRVCQAIGGETAEFMGHLIKLRADRMAVNIAVNSIGTPLNEPAMR-STRHKLFPAVGYLYPAGTARLAEVTDEGQMEGALSAVPEYQKLYA--SIAGAKDKTLEDLFYEKDVQALEVAFEGQMHFAPFYAYVKLKQQEIRNLVWIAECILQGQKDEINKFVPIFSDSSPWRLAG 389
            V+ AG + TFN+ HG+ E +VRGFRSGFL D DYHHLTQCESLED+K+NLQETDYDQF+A+E    I P   +     KLV+E  FLRA A+EPL  FLD+I+YE+MIDNV+LLLKGTL+GR  NELI Q HPLG F ES MRSI  FE + KGY+DLY+TVLIDTP+G YFSQ+L+++A  +++   S++RN+LEEVQ+E+IKNS+ KL+LEDFY  CQ IGG+TA  MG ++K RADR+A+NI +NS GTPLNEPAMR S R  L+P++G LYP  TA LAE  DE  +  AL + P Y+K++      G   K+++D FYE+DVQ  E+AF+ QMHFA FYAYVKLK+QE+RNLVWI ECI+Q Q+D IN F+PIFSD++PWR  G
Sbjct:    2 VVAAGDITTFNIQHGYVEGLVRGFRSGFLDDVDYHHLTQCESLEDVKLNLQETDYDQFLADESSGTISPGLIQAGTTNKLVEEFNFLRAQAMEPLGQFLDFITYEYMIDNVILLLKGTLNGRDVNELIGQLHPLGKFDESIMRSICTFEPNAKGYSDLYETVLIDTPIGTYFSQFLEESAGGDRMEGTSDVRNVLEEVQMELIKNSMLKLWLEDFYNFCQEIGGDTATIMGEILKARADRIAINITLNSFGTPLNEPAMRISDRKPLYPSIGSLYPDATAILAEAGDESSLGAALDSFPVYRKIWEVHQGEGVDSKSIDDAFYERDVQMAELAFQSQMHFACFYAYVKLKEQEVRNLVWICECIVQNQRDAINNFIPIFSDTAPWRGKG 390

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BLAST of NO06G03580 vs. NCBI_GenBank
Match: XP_002293711.1 (vacuolar proton pump D subunit [Thalassiosira pseudonana CCMP1335] >EED88720.1 vacuolar proton pump D subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 481.5 bits (1238), Expect = 2.500e-132
Identity = 235/387 (60.72%), Postives = 299/387 (77.26%), Query Frame = 0

Query:   13 LGTFNLDHGFPEAVVRGFRSGFLTDYDYHHLTQCESLEDMKMNLQETDYDQFMANEQHIIPVTFRDKALQK-----LVQEMEFLRAHAVEPLATFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCHPLGLFKESTMRSIPAFEASPKGYADLYQTVLIDTPVGPYFSQYLQDNAEQLSDASEMRNILEEVQIEVIKNSLHKLYLEDFYRVCQAIGGETAEFMGHLIKLRADRMAVNIAVNSIGTPLNEPAMR-STRHKLFPAVGYLYPAGTARLAEVTDEGQMEGALSAVPEYQKLY-ASIAGAKDKTLEDLFYEKDVQALEVAFEGQMHFAPFYAYVKLKQQEIRNLVWIAECILQGQKDEINKFVPIFSDSSPWRLAGKLNR 393
            + +FN+ HGF EA+VRG RS FLTD DYHHLTQCE+L+D+++NL ETDY   + +   +IP   +  A++K     LV E ++LR  AVEPL+TFLD+I+YE+MI+NVMLLLKGTLSGR  NELI QCHPLG+FKESTMRSIP FE+SP+GY DLYQTVL+DTPVGPYFS +LQ+ A +     E+ N+LEEV+IE+IK+SL K ++EDF R   ++GGETA  MG L+K+RAD  A+NI +NS GTPLNEPAMR S R +L+P+VG+LYPAGT+ LA+V+DE ++   L   P Y  ++    AG   K+++D FYE+DVQ LE+AFEGQMHF  FYAYVKLK+QEIRNLVW++ECILQ QK+EINKFVP+FS  +PWR   K  R
Sbjct:    1 MASFNILHGFTEALVRGMRSSFLTDADYHHLTQCETLDDVRLNLSETDYANALEDMNSLIPTGLQKAAVEKVRFVLLVTEFQYLRTQAVEPLSTFLDFITYEYMIENVMLLLKGTLSGRDINELIAQCHPLGMFKESTMRSIPTFESSPRGYQDLYQTVLVDTPVGPYFSLFLQETAMR----GEVSNVLEEVEIEIIKSSLIKYWIEDFARFVDSLGGETATIMGDLLKVRADTNAINITLNSFGTPLNEPAMRASDRKRLYPSVGHLYPAGTSMLADVSDEDELGRVLELFPLYSSIWNVHAAGGDGKSIDDAFYERDVQMLELAFEGQMHFGAFYAYVKLKEQEIRNLVWVSECILQQQKEEINKFVPVFSFHAPWRAGSKSRR 383

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BLAST of NO06G03580 vs. NCBI_GenBank
Match: XP_002896603.1 (H - or Na -translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily [Phytophthora infestans T30-4] >EEY66973.1 H - or Na -translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily [Phytophthora infestans T30-4])

HSP 1 Score: 481.1 bits (1237), Expect = 3.300e-132
Identity = 237/389 (60.93%), Postives = 297/389 (76.35%), Query Frame = 0

Query:    7 VMEAGGLGTFNLDHGFPEAVVRGFRSGFLTDYDYHHLTQCESLEDMKMNLQETDYDQFMANE--QHIIPVTFRDKALQKLVQEMEFLRAHAVEPLATFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCHPLGLFKESTMRSIPAFEASPKGYADLYQTVLIDTPVGPYFSQYLQDNA--EQLSDASEMRNILEEVQIEVIKNSLHKLYLEDFYRVCQAIGGETAEFMGHLIKLRADRMAVNIAVNSIGTPLNEPAMR-STRHKLFPAVGYLYPAGTARLAEVTDEGQMEGALSAVPEYQKLYA--SIAGAKDKTLEDLFYEKDVQALEVAFEGQMHFAPFYAYVKLKQQEIRNLVWIAECILQGQKDEINKFVPIFSDSSPWRLAG 389
            V  AG + TFN+ HG+ E +VRGFRSGFL D DYHHLTQCESLED+K+NLQETDYDQF+A+E    I P   +     KLV+E  FLRA A+EPL  FLD+I+YE+MIDNV+LLLKGTL+GR  NELI Q HPLG F ES MRSI  FE + KGY+DLY+TVLIDTP+G YFSQ+L+++A  +++   S++RN+LEEVQ+E+IKNS+ KL+LEDFY  CQ IGG+TA  MG ++  RADR+A+NI +NS GTPLNEPAMR S R  L+P++G LYP  TA LAE  DE  +  AL + P Y+K++      G   K+++D FYE+DVQ  E+AF+ QMHFA FYAYVKLK+QE+RNLVWI ECI+Q Q+D IN F+PIFSDS+PWR  G
Sbjct:    2 VAAAGDISTFNIQHGYVEGLVRGFRSGFLDDVDYHHLTQCESLEDVKLNLQETDYDQFLADESSSSISPGLIQTGTSNKLVEEFNFLRAQAMEPLGEFLDFITYEYMIDNVILLLKGTLNGRDVNELIGQLHPLGKFDESIMRSICTFEPNAKGYSDLYETVLIDTPIGTYFSQFLEESAGGDRMEGTSDVRNVLEEVQMELIKNSMLKLWLEDFYDFCQEIGGDTATIMGEILTARADRIAINITLNSFGTPLNEPAMRISDRKPLYPSIGSLYPDATALLAEAGDESSLGAALDSFPVYRKIWEVHQGEGVDSKSIDDAFYERDVQMAELAFQSQMHFACFYAYVKLKEQEVRNLVWICECIVQNQRDAINNFIPIFSDSAPWRGKG 390

The following BLAST results are available for this feature:

BLAST of NO06G03580 vs. NCBI_GenBank

BLAST of NO06G03580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_009033412.1	4.400e-145	65.86	hypothetical protein AURANDRAFT_59824 [Aureococcus...	[more]
CBN76508.1	8.100e-139	60.15	conserved unknown protein [Ectocarpus siliculosus]	[more]
GAY06361.1	1.400e-135	62.08	H or Na translocating Ftype putative, partial [Pyt...	[more]
GAY03534.1	1.400e-135	62.08	leucine-tRNA ligase [Pythium insidiosum]	[more]
EJK75011.1	6.000e-134	61.74	hypothetical protein THAOC_03282 [Thalassiosira oc...	[more]
OWZ18202.1	6.000e-134	61.70	H - or Na -translocating F-type, V-type and A-type...	[more]
XP_002185659.1	1.700e-133	59.43	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
XP_008906582.1	1.100e-132	60.93	hypothetical protein PPTG_12116 [Phytophthora para...	[more]
XP_002293711.1	2.500e-132	60.72	vacuolar proton pump D subunit [Thalassiosira pseu...	[more]
XP_002896603.1	3.300e-132	60.93	H - or Na -translocating F-type, V-type and A-type...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR029	ncniR029	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR028	ncniR028	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000122	NSK000122	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G03580.1	NO06G03580.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597710	gene_6684	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100031g1	gene4175	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G03580.1	NO06G03580.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO06G03580 ID=NO06G03580|Name=NO06G03580|organism=Nannochloropsis oceanica|type=gene|length=3290bp
GAGGAGGACAAGAAGGCGCGCCCTTTGGTTGTGATAAATTTGAGTGGTTC
AGAAGTCGTGCGGGTTCGTCTACTTGAAAGTTGTTGTTTGCGCTTGCCGC
CGCCGTTTCAGCCATGCTGATGGGATGTGCGCATGTCGAGACAATGTTCA
TGACTGAATATACCCGCTCCAGCCCGCATTACGCTCTCCCCGTCCATGAC
GGTCAAAGTTTTCAGATGTATTACATGTTTGGGTGCGAGTTTCGAGGGGC
CTGAAGGTCCCGAAGGGTCAGGGCCGCGACATTTGCCCATCTCCCTCCCT
GTAACACGAGGAGATGCATTTTGGGAGAGGGGATATCGCCATGGTCTCAC
GTCTGTCTTTCCATCCGTACACTTACTTGACACAGGGCACATTCCTTCGT
AGTTGCAGTAGCAGCAGCAACCCTAGCAGCAGCGGGGAAGGTGCTTGTTT
ATTTGTGACCCGACCCGCGTACTCAGACGACGAGGACAAGGACGGCAAGA
AGAAGGGAGACAGGAGCGAATCAATTTGGACTTGTCCCACCCTAAAGCAC
TACATAACCAGCGAACATGTCGGTGGCATCAGACGTGATGGAGGCCGGTG
GGCTTGGGACCTTCAATTTGGATCATGGCTTTCCCGAGGCAGTGGTGCGA
GGCTTTCGCTCGGGCTTCCTAACGGATTATGATTACCATCATCTCACCCA
Ggtacgttgtggcggtattcagaaggacagggggaatggaacgggaaggg
acgaaatgacacaggatgtgagcgcgttatgagattggatggatggagcc
tagagagacgaccattttgccaatcgataattgcttgccttctttaaacg
cgagactcaaccggccttcctcaatccctcccgacttcttccctccctct
gggaagTGCGAGTCCTTGGAAGACATGAAGATGAATCTCCAAGAGACAGA
CTACGACCAGTTCATGGCCAATGAGCAACACATCATTCCCGTCACCTTTC
GTGACAAGGCCCTCCAGAAGCTCGTGCAGGAAATGGAGTTTCTGCGGGCG
CACGCCGTGGAGCCCTTGGCGACGTTTCTTGATTACATTTCATACGAATT
CATGATTGATAACGTGATGCTTCTATTGAAGGGGACCTTGTCGGGACGCA
GTGCGAATGAATTGATCAAGCAGTGCCACCCGTTGGGGTTGTTCAAGGAG
AGCACCATGCGCTCAATCCCGGCATTTGAGGCTTCTCCTAAAGGGTACGC
AGACCTGTACCAGACCGTGTTAATTGACACTCCCGTTGGACCGTATTTTA
GTCAGTACCTGCAGGACAATGCCGAGCAATTGAGTGATGCTTCCGAGATG
AGGAATATACTGGAGGAGGTGCAGATTGAGgtaggcctggcgggacgggg
gaagggaggggggaagaggaagctgtcacgcattcatccaaggctttgta
ctcacccgtacatcccccccgccctcccttcttccctccatcccgtttcc
ctttcgtctcaccgtctaccctcagGTGATCAAAAACTCCCTGCACAAGC
TGTACCTCGAGGACTTCTACCGCGTCTGCCAGGCCATCGGGGGTGAGACG
GCCGAGTTCATGGGCCATTTGATCAAGCTCCGCGCCGACCGGATGGCCGT
TAACATTGCCGTTAACAGgtacgcccctctccccctccctccctttttct
cttgcttgcttcttgtttgacagagagacggctgagctgcattcgacatc
cctctcaggaaggacgtcctcccttcctcctttcctccaccccctggtcc
atcacgcagtctcaccccccctcttcccctcttccctccctccctccccc
aagCATCGGTACCCCCCTCAACGAGCCGGCCATGCGCTCCACCCGCCATA
AACTCTTCCCTGCCGTCGGCTACCTCTACCCCGCAGGCACTGCCCGCCTG
GCCGAGGTCACGGACGAAGGACAGATGGAAGGGGCCTTAAGCGCTGTGCC
TGAGTACCAGAAGCTGTATGCTTCCATCGCGGGGGCAAAGgtacgtcgtt
ggctttccctccctccattcctctctccctccctctcttcctccctcgcc
ctctcactgttttctagaccgtggcagttgagggctgccagtcgtttgaa
ttcgtcgtggcgttgtctcaacactcccgctcgctccctcccctcctccc
tcagGACAAGACGCTGGAGGACTTGTTCTACGAGAAGGATGTTCAGGCCC
TGGAGGTGGCCTTCGAGGGGCAGATGCACTTTGCTCCTTTCTACGCCTAC
GTCAAGCTGAAGCAGCAAGAGATCAGgtagggtgagagggagggaggggg
ggagggacagaggaaagagtgagtgtcacgtagaggggctgccacgtcat
gtctggccgtgacagacagtgtcatttaccgcctacccctccctccctcc
ctccctccctccctccctccctccctccctttctcagAAACCTGGTCTGG
ATCGCCGAGTGCATCCTGCAAGGGCAGAAGGACGAAATTAACAAATTCGT
TCCGATCTTTTCCGACTCATCCCCCTGGCGACTGGCCGGGAAGTTGAATC
GCTAAGAAGCAAGAGGGAGGGAGGGAGGGAGGGAGGGACGGCCGGACGGA
GAAAGGGAGGAGAGAAGTGGAAAAGAGTTGTGTGTGTTGATGTAGATGTG
AAGATAAACAAGATTTGGGTTTCAAATTTTTAATAGATTGAAGAAATAGG
GGAAAGGGGAAAAAGAGAAGAGAAGAGGGTGAGAAAGAGCGCGCGCGTGA
AGAGGCGGTGGAGGAGAAATATGGAGGGGAGGAACAGAGGGAAGGAGAGG
ACGGCGACCGTGGGTGCACTCAGTGGGTGCACTCAGTATATCCACTAAAA
AGGGAGAGGAGAGGAAAGAAGAGAGGGACTGAGGGAGAACAAAGAGCTCG
TCAAAGGCAAAGAAAGAGCGCTACCATTACACTCGGCGTGATGATGGCCA
TGACCTACTCCCAGCCACTCATTCCCCCCCCACATCATGCATATACCACC
ACCCACACAGTACGTACACCCTTAAAGTCCATATGCACCAAAAGCAGACT
GTTAACGTTGTTGCTTATTACATTTCCCTAAATTTCGCCATACAACTACT
CATTCAATTACCCTGTATTCGCCATCCGACACAACCACGTCCTCTTCCGT
CCGTTGATTTCTTCATCGTTACCATCGCCACAGATGCCGATAATTACCAT
TGCTTATGAGTATGCAAAGTTAATGAAGCTATGTACATTC

protein sequence of NO06G03580.1

>NO06G03580.1-protein ID=NO06G03580.1-protein|Name=NO06G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MSVASDVMEAGGLGTFNLDHGFPEAVVRGFRSGFLTDYDYHHLTQCESLE
DMKMNLQETDYDQFMANEQHIIPVTFRDKALQKLVQEMEFLRAHAVEPLA
TFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCHPLGLFKESTMRSIP
AFEASPKGYADLYQTVLIDTPVGPYFSQYLQDNAEQLSDASEMRNILEEV
QIEVIKNSLHKLYLEDFYRVCQAIGGETAEFMGHLIKLRADRMAVNIAVN
SIGTPLNEPAMRSTRHKLFPAVGYLYPAGTARLAEVTDEGQMEGALSAVP
EYQKLYASIAGAKDKTLEDLFYEKDVQALEVAFEGQMHFAPFYAYVKLKQ
QEIRNLVWIAECILQGQKDEINKFVPIFSDSSPWRLAGKLNR*

Synonyms

Publications