NO06G03490, NO06G03490 (gene) Nannochloropsis oceanica

Overview
NameNO06G03490
Unique NameNO06G03490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1739
Alignment locationchr6:963968..965706 +

Link to JBrowse

Properties
Property NameValue
DescriptionNADPH-dependent diflavin oxidoreductase 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:963968..965706 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G03490 vs. NCBI_GenBank
Match: XP_005853473.1 (nadph dependent diflavin oxidoreductase 1 [Nannochloropsis gaditana CCMP526] >EKU22887.1 nadph dependent diflavin oxidoreductase 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 126.3 bits (316), Expect = 2.100e-25
Identity = 58/113 (51.33%), Postives = 84/113 (74.34%), Query Frame = 0 
Query:  109 MGIFAISTDVWGTLLNAAMLIRLRDKSQNPFVRMAVRAVFRSRRFSSLLAIAGASTGVRMMFVACNNIIPFCGMCVMPVLLRKYTVRQAGVAWMEQMDMALTIAVNERCGFPT 222
            M + A+ TD WG LLNA MLIRLRD  + P    A R + +++RFSS+ ++ GA+TGVR++++  NN+IPF G  ++P+L++K TVRQ GVAW +QMDM+L + +NER G+PT
Sbjct:    1 MAVVAVCTDFWGILLNATMLIRLRDNVKYPSFGKACRNLIQNKRFSSIASLTGATTGVRILYLTSNNLIPFFGTFILPLLVQKCTVRQVGVAWEQQMDMSLAVGINERLGYPT 113
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BLAST of NO06G03490 vs. NCBI_GenBank
Match: WP_012597641.1 (hypothetical protein [Cyanothece sp. PCC 7424] >ACK68691.1 hypothetical protein PCC7424_0223 [Cyanothece sp. PCC 7424])

HSP 1 Score: 75.9 bits (185), Expect = 3.200e-10
Identity = 45/146 (30.82%), Postives = 83/146 (56.85%), Query Frame = 0 
Query:  185 MPVLLRKYTVRQAGVAWMEQMDMALTIAVNERCGFPTGRYRAIAYYKLRWGNEPRMLVDVNSVIALPLLLVVFGFIVPMLVIGRVKGNNHLMAGGFTAVIFLSGFI-QFVRPLIANIYAMAAYRYTEFGENEIFAKYPTLAPRAFR 330
            +P L++K + ++ GV+   Q++M L I V E   +   R+RAI      WG       ++  ++ + +L +VF   +P+L +G ++    L+  G+ A++F++  + Q    L + IYA AAYRY   G+N+++A  P++AP A+R
Sbjct:  145 LPALIQKISTKRKGVSLTLQLNMCLPIMVCEGLAYEKARHRAIQIMTQAWGKNLSETKNIGVLLLITILPLVFLIGIPILTVGIIQNKMLLIVIGW-AILFVAIIVSQVFSTLCSQIYAFAAYRYIVEGKNDVYAD-PSIAPNAYR 288
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BLAST of NO06G03490 vs. NCBI_GenBank
Match: WP_013323808.1 (hypothetical protein [Cyanothece sp. PCC 7822] >ADN15740.1 hypothetical protein Cyan7822_3806 [Cyanothece sp. PCC 7822])

HSP 1 Score: 72.4 bits (176), Expect = 3.500e-9
Identity = 69/290 (23.79%), Postives = 140/290 (48.28%), Query Frame = 0 
Query:   51 WRHILVDI-LFGNPLLRDLIYWDMALHVLCWTCFAAMLWAFFLGFLP--FNLA----FKIYFFGCMGIFAISTDVWGTLLNAAMLIRLRDKSQNPFVR--MAVRAVFRSRRFSSLLAIAGASTGVRMMFVACNNIIPFC-GMCVMPVLLRKYTVRQAGVAWMEQMDMALTIAVNERCGFPTGRYRAIAYYKLRWGNEPRMLVDVNSVIALPLLLVVFGFIVPMLVIGRVKGNNHLMAGGFTAVIFLSGFI-QFVRPLIANIYAMAAYRYTEFGENEIFAKYPTLAPRAFR 330
            WR     + +   P  +   +W + L +     F  +     L F+P  F+L      KI     M +   +  +     NAA L  LR   +   +     VR  F+    + ++  +   + ++++++  N  +    G+ + P++++K +V++ G+    Q++M L I V+E   +   R+RAI      WG       ++  V+ + ++ +VF   +P+L++G +  ++ L+  G+ A+IFL+  + Q    L + IYA AAYRY+  G+N++++   ++AP A+R
Sbjct:    9 WRFFFETLAILNRPTAQGKFFWGLPLIISLLIAFCGL-----LPFVPQIFSLTDKRLEKIQTILMMYVLFFTVTLISNFFNAAFLYLLRGFLEGQPISGFQGVRKTFKIS--ADIVIYSLVCSIIQLIYLIFNMTLNLVFGLIIAPMIIQKISVKRKGLPLTLQLNMCLPIMVSENLHYEKARHRAIKIITETWGKNLSETNNITPVLVVTIVPLVFLIGIPLLIMGMMGKHSTLLILGW-AIIFLAVILSQVFNALCSQIYAFAAYRYSVEGKNDLYSD-ASIAPNAYR 289
The following BLAST results are available for this feature:
BLAST of NO06G03490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005853473.12.100e-2551.33nadph dependent diflavin oxidoreductase 1 [Nannoch... [more]
WP_012597641.13.200e-1030.82hypothetical protein [Cyanothece sp. PCC 7424] >AC... [more]
WP_013323808.13.500e-923.79hypothetical protein [Cyanothece sp. PCC 7822] >AD... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000129NSK000129Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03490.1NO06G03490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597684gene_6675Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03490.1NO06G03490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03490 ID=NO06G03490|Name=NO06G03490|organism=Nannochloropsis oceanica|type=gene|length=1739bp
ATGACCACACACCCAACCAGCTGCGAAAGCACCGCCGAAGCGGAGAATGA
CCTTCACGATTTCTCCGGCATCGCCACTGTAAGCGGTCTACAAAACACGA
CGGATGACAAGAATCGGGAAGACGGGGAGCTACCAACGCCCTTTCAGCTA
TGGCGGCACATTCTTGTCGACATTCTTTTCGGCAATCCCCTCTTGCGGGA
TTTAATCTATTGGGACATGGCCTTGCACGTCCTATGTTGGACGTGCTTCG
CCGCCATGCTCTGGGCATTTTTCTTGGGCTTCTTACCATTTAATCTTGCA
TTCAAGATCTACTTCTTTGGGTGCATGGGAATTTTTgtaagtgaagttga
gtcgggcagggtatggggtggcggtggtgcgtttgattcgcgtgcgagtg
ggtaaagtgatttgaagttacaccggacttacacagggtatgcaggttga
tttatttacaagtttatttgtacatttatttatctatgctcctcacccat
tcagcgtgctgaccattcatcactcttccgcaccaaaacttattcagGCC
ATCTCTACCGATGTGTGGGGCACTCTCCTCAATGCCGCCATGCTCATCCG
CCTTCGAGACAAGAGTCAAAATCCTTTCGTTCGGATGGCCGTCAGGGCCG
TTTTTCGCTCGCGGCGCTTCTCCTCCCTTCTTGCGATTGCTGGGGCCTCG
ACCGGTGTTCGTATGATGTTTGTCGCATgtacgttgaattgattgaatgg
cacgtgtggcctaagccagagggggaaggcggctagacgacagaatggtc
ccagctatactatacaaaacgtgaaaatacaaatggtgtagtcactatct
tttcccctccttttattgttctctttccctccctattttgcgcctccagG
CAATAATATCATTCCGTTTTGCGGGATGTGTGTCATGCCGGTGCTGTTGC
GGAAGTACACCGTTCGACAGGCGGGCGTGGCTTGGATGGAGCAGgtagaa
aggaggccaaaacggaaagaaggaaggggaaaggggatgggggtcatttc
tcgcacggaaatcacggctatgtcggctgttccctttcccttgctcagtt
ccccccctccttcctcccgccctccctctctccctccttcgcgactcgcc
tcccaactaacaacaacagATGGACATGGCCTTGACTATTGCAGTCAATG
AGCGCTGCGGTTTTCCCACGGGAAGGTACCGAGCTATCGCCTATTACAAA
TTAAGGTGGGGTAACGAACCCCGGATGTTGGTCGACGTCAACTCCGTCAT
CGCACTCCCCCTTCTCCTTGTCGTCTTCGGCTTCATCGTCCCCATGCTGG
TGATTGGTCGGGTGAAGGGTAACAATCATTTGATGGCGGGAGGTTTCACA
GCAGTCATTTTCCTATCTGGGTTCATCCAGTTCGTGCGTCCCTTAATTGC
CAACATCTACGCCATGGCCGCCTATCGATACACTGAATTCGGGGAAAATG
AGATATTTGCCAAGTATCCCACCTTAGCCCCCCGTGCTTTTCGGAGTCTC
GCCAGGGAGAGGGAGGAGAAGGCGGCACAGAAGGCTGCGGGGGCAGCAGC
AACGGGAGCAGGGCTGGCGGCCGAGGCGGTCGAGTTGAGGGGAGGAGGGC
AGGTGAATGAGGTGGAGGGTGATGGATGGGTGCGTGTGGATGCAAGCGGA
CTGGAAGGAAGTGTCACAAGTAGGAATGGGCAAGTATAG
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protein sequence of NO06G03490.1

>NO06G03490.1-protein ID=NO06G03490.1-protein|Name=NO06G03490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MTTHPTSCESTAEAENDLHDFSGIATVSGLQNTTDDKNREDGELPTPFQL
WRHILVDILFGNPLLRDLIYWDMALHVLCWTCFAAMLWAFFLGFLPFNLA
FKIYFFGCMGIFAISTDVWGTLLNAAMLIRLRDKSQNPFVRMAVRAVFRS
RRFSSLLAIAGASTGVRMMFVACNNIIPFCGMCVMPVLLRKYTVRQAGVA
WMEQMDMALTIAVNERCGFPTGRYRAIAYYKLRWGNEPRMLVDVNSVIAL
PLLLVVFGFIVPMLVIGRVKGNNHLMAGGFTAVIFLSGFIQFVRPLIANI
YAMAAYRYTEFGENEIFAKYPTLAPRAFRSLAREREEKAAQKAAGAAATG
AGLAAEAVELRGGGQVNEVEGDGWVRVDASGLEGSVTSRNGQV*
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Synonyms
Publications