NO06G03430, NO06G03430 (gene) Nannochloropsis oceanica

Overview
NameNO06G03430
Unique NameNO06G03430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length367
Alignment locationchr6:945477..945843 +

Link to JBrowse

Properties
Property NameValue
DescriptionDynein light chain axonemal
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:945477..945843 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO:0009987cellular process
Vocabulary: Cellular Component
TermDefinition
GO:0030286dynein complex
GO:0005856cytoskeleton
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR037177DLC_sf
IPR001372Dynein_light_chain_typ-1/2
Vocabulary: Molecular Function
TermDefinition
GO:0003774motor activity
Homology
[Close]
BLAST of NO06G03430 vs. NCBI_GenBank
Match: EWM26319.1 (dynein light chain axonemal [Nannochloropsis gaditana])

HSP 1 Score: 128.6 bits (322), Expect = 8.000e-27
Identity = 59/75 (78.67%), Postives = 70/75 (93.33%), Query Frame = 0 
Query:    1 MYTEAVELITMAVDKHATSKNYEAAATMMKNTFDKKFGSHWHVAIGEGFGFEVTHQQRHIIYVFFGTLGVLCYKM 76
            M++EAVELITMAVDKHA SKNYEAAA M+K TFDKKFG++WHV IGEGFGFE+++QQ+H++YVF GTLGVLCYKM
Sbjct:   15 MFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYKM 89
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BLAST of NO06G03430 vs. NCBI_GenBank
Match: CBJ28530.1 (Dynein light chain 4, axonemal [Ectocarpus siliculosus])

HSP 1 Score: 105.1 bits (261), Expect = 9.500e-20
Identity = 46/71 (64.79%), Postives = 61/71 (85.92%), Query Frame = 0 
Query:    4 EAVELITMAVDKHATSKNYEAAATMMKNTFDKKFGSHWHVAIGEGFGFEVTHQQRHIIYVFFGTLGVLCYK 75
            EAVE++TM+VDK    KNYEAAA ++KN+ DKKFG+ WH AIGEGFGFE+T+QQR++IY+F+G +GVL +K
Sbjct:   63 EAVEIVTMSVDKFINVKNYEAAAQLIKNSMDKKFGASWHCAIGEGFGFEITYQQRNMIYIFYGQIGVLTFK 133
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BLAST of NO06G03430 vs. NCBI_GenBank
Match: XP_008612592.1 (hypothetical protein SDRG_08480 [Saprolegnia diclina VS20] >EQC33797.1 hypothetical protein SDRG_08480 [Saprolegnia diclina VS20])

HSP 1 Score: 102.8 bits (255), Expect = 4.700e-19
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:    3 TEAVELITMAVDKHATSKNYEAAATMMKNTFDKKFGSHWHVAIGEGFGFEVTHQQRHIIYVFFGTLGVLCYK 75
            TE VE+ITMAVDKH   KNYEAAA ++K + DKKFGS WH  IGEG+GF++++QQRH++Y++ G +G+L YK
Sbjct:   38 TETVEIITMAVDKHVPVKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109
[Close]
BLAST of NO06G03430 vs. NCBI_GenBank
Match: XP_012208220.1 (hypothetical protein SPRG_13829 [Saprolegnia parasitica CBS 223.65] >KDO21039.1 hypothetical protein SPRG_13829 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 102.8 bits (255), Expect = 4.700e-19
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:    3 TEAVELITMAVDKHATSKNYEAAATMMKNTFDKKFGSHWHVAIGEGFGFEVTHQQRHIIYVFFGTLGVLCYK 75
            TE VE+ITMAVDKH   KNYEAAA ++K + DKKFGS WH  IGEG+GF++++QQRH++Y++ G +G+L YK
Sbjct:   38 TETVEIITMAVDKHVPLKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109
[Close]
BLAST of NO06G03430 vs. NCBI_GenBank
Match: OQR85107.1 (dynein light chain [Achlya hypogyna])

HSP 1 Score: 102.8 bits (255), Expect = 4.700e-19
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:    3 TEAVELITMAVDKHATSKNYEAAATMMKNTFDKKFGSHWHVAIGEGFGFEVTHQQRHIIYVFFGTLGVLCYK 75
            TE VE+ITMAVDKH   KNYEAAA ++K + DKKFGS WH  IGEG+GF++++QQRH++Y++ G +G+L YK
Sbjct:   38 TETVEIITMAVDKHVPLKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109
[Close]
BLAST of NO06G03430 vs. NCBI_GenBank
Match: OQR90473.1 (dynein light chain [Thraustotheca clavata])

HSP 1 Score: 102.8 bits (255), Expect = 4.700e-19
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:    3 TEAVELITMAVDKHATSKNYEAAATMMKNTFDKKFGSHWHVAIGEGFGFEVTHQQRHIIYVFFGTLGVLCYK 75
            TE VE+ITMAVDKH   KNYEAAA ++K + DKKFGS WH  IGEG+GF++++QQRH++Y++ G +G+L YK
Sbjct:   38 TETVEIITMAVDKHVPVKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109
[Close]
BLAST of NO06G03430 vs. NCBI_GenBank
Match: XP_009838605.1 (hypothetical protein H257_12917 [Aphanomyces astaci] >ETV71756.1 hypothetical protein H257_12917 [Aphanomyces astaci])

HSP 1 Score: 102.4 bits (254), Expect = 6.100e-19
Identity = 43/72 (59.72%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:    3 TEAVELITMAVDKHATSKNYEAAATMMKNTFDKKFGSHWHVAIGEGFGFEVTHQQRHIIYVFFGTLGVLCYK 75
            TE +E+ITMAVDKH   KNYEAAA ++K + DKKFGS WH  IGEG+GF++++QQRH++Y++ G +G+L YK
Sbjct:   39 TETIEIITMAVDKHVPLKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 110
[Close]
BLAST of NO06G03430 vs. NCBI_GenBank
Match: XP_008868294.1 (hypothetical protein H310_05374 [Aphanomyces invadans] >ETW02910.1 hypothetical protein H310_05374 [Aphanomyces invadans])

HSP 1 Score: 102.4 bits (254), Expect = 6.100e-19
Identity = 43/72 (59.72%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:    3 TEAVELITMAVDKHATSKNYEAAATMMKNTFDKKFGSHWHVAIGEGFGFEVTHQQRHIIYVFFGTLGVLCYK 75
            TE +E+ITMAVDKH   KNYEAAA ++K + DKKFGS WH  IGEG+GF++++QQRH++Y++ G +G+L YK
Sbjct:   39 TETIEIITMAVDKHVPLKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 110
[Close]
BLAST of NO06G03430 vs. NCBI_GenBank
Match: OWZ16581.1 (Dynein light chain [Phytophthora megakarya])

HSP 1 Score: 101.3 bits (251), Expect = 1.400e-18
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 0 
Query:    3 TEAVELITMAVDKHATSKNYEAAATMMKNTFDKKFGSHWHVAIGEGFGFEVTHQQRHIIYVFFGTLGVLCYK 75
            TE +E+ITMA DKH   KNYEAAA ++K + DKKFGS WH  IGEG+GF+V++QQRH++Y++ G +GVL YK
Sbjct:   38 TETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDVSYQQRHMLYLYVGEIGVLVYK 109
[Close]
BLAST of NO06G03430 vs. NCBI_GenBank
Match: XP_009514547.1 (hypothetical protein PHYSODRAFT_293265 [Phytophthora sojae] >EGZ27272.1 hypothetical protein PHYSODRAFT_293265 [Phytophthora sojae])

HSP 1 Score: 100.9 bits (250), Expect = 1.800e-18
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 0 
Query:    3 TEAVELITMAVDKHATSKNYEAAATMMKNTFDKKFGSHWHVAIGEGFGFEVTHQQRHIIYVFFGTLGVLCYK 75
            TE +E+ITMA DKH   KNYEAAA ++K + DKKFGS WH  IGEG+GF++++QQRH++Y++ G +GVL YK
Sbjct:   38 TETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDISYQQRHMLYLYVGDIGVLVYK 109
The following BLAST results are available for this feature:
BLAST of NO06G03430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26319.18.000e-2778.67dynein light chain axonemal [Nannochloropsis gadit... [more]
CBJ28530.19.500e-2064.79Dynein light chain 4, axonemal [Ectocarpus silicul... [more]
XP_008612592.14.700e-1961.11hypothetical protein SDRG_08480 [Saprolegnia dicli... [more]
XP_012208220.14.700e-1961.11hypothetical protein SPRG_13829 [Saprolegnia paras... [more]
OQR85107.14.700e-1961.11dynein light chain [Achlya hypogyna][more]
OQR90473.14.700e-1961.11dynein light chain [Thraustotheca clavata][more]
XP_009838605.16.100e-1959.72hypothetical protein H257_12917 [Aphanomyces astac... [more]
XP_008868294.16.100e-1959.72hypothetical protein H310_05374 [Aphanomyces invad... [more]
OWZ16581.11.400e-1861.11Dynein light chain [Phytophthora megakarya][more]
XP_009514547.11.800e-1859.72hypothetical protein PHYSODRAFT_293265 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000136NSK000136Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03430.1NO06G03430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|544912gene_6667Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100078g20gene4193Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03430.1NO06G03430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03430 ID=NO06G03430|Name=NO06G03430|organism=Nannochloropsis oceanica|type=gene|length=367bp
ATGTATACCGAAGCTGTGGAGCTTATCACCATGGCGGTCGACAAGCACGC
TACTTCCAAAAACTATGAGGCCGCCGCCACGATGATGAAAgtgagctttt
tgaggtgtctatttatgaaatgtcctgggtagcataaccatctgtttcct
ccttccagtctttacgcacaatcttgcacttctcacgccgcccccttcgt
ttctgctcaatcctactttataaaaacagAATACGTTTGACAAGAAATTT
GGAAGTCACTGGCACGTTGCGATCGGGGAGGGCTTCGGATTCGAGGTGAC
GCATCAGCAACGGCACATTATATATGTTTTCTTTGGGACGTTGGGCGTGC
TATGTTACAAAATGTGA
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protein sequence of NO06G03430.1

>NO06G03430.1-protein ID=NO06G03430.1-protein|Name=NO06G03430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MYTEAVELITMAVDKHATSKNYEAAATMMKNTFDKKFGSHWHVAIGEGFG
FEVTHQQRHIIYVFFGTLGVLCYKM*
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Synonyms
Publications