NO06G03410, NO06G03410 (gene) Nannochloropsis oceanica

Overview
NameNO06G03410
Unique NameNO06G03410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2935
Alignment locationchr6:940806..944178 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:940806..944178 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G03410 vs. NCBI_GenBank
Match: EWM26332.1 (hypothetical protein Naga_100078g19 [Nannochloropsis gaditana])

HSP 1 Score: 200.7 bits (509), Expect = 8.900e-48
Identity = 95/140 (67.86%), Postives = 112/140 (80.00%), Query Frame = 0 
Query:    8 EEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKLKCDPMRITKKFTGSSCLGKRIYHSSSSRSQCTDSSLTMAVEDAKRHLAQLESRLWQRLERNRDNKEYMGCLDYGAGVYVHANIISTPAIDALLLQSRNDPCFWNDD 148
            EEEEF+Q +I YFNTGLLPLP GTTLRAYLAEKLKCDPMRITKKFTG++CLG+R+Y  S S S         AV  AK HL +LE+R+WQRLER R+NK+YMGCL+Y AG Y  + ++STPAIDALL QSRNDP FW++D
Sbjct:   17 EEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSISSSSTRAEPSPSAVASAKSHLMELEARMWQRLERRRENKDYMGCLEYDAGGYDSSYLVSTPAIDALLRQSRNDPHFWDED 156
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BLAST of NO06G03410 vs. NCBI_GenBank
Match: XP_009043471.1 (hypothetical protein AURANDRAFT_69453, partial [Aureococcus anophagefferens] >EGB01830.1 hypothetical protein AURANDRAFT_69453, partial [Aureococcus anophagefferens])

HSP 1 Score: 122.9 bits (307), Expect = 2.400e-24
Identity = 68/145 (46.90%), Postives = 96/145 (66.21%), Query Frame = 0 
Query:    8 EEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKLKCDPMRITKKFTGSSCLGKRIYHSSSSRSQCTDSSL---TMAVEDAKRHLAQLESRLWQRLERNRDNKEYMGCLDYGAGVYVHANIISTPAIDALLLQSRNDPCFWNDDNV 150
            EE EF+  II  FNTGLL LPEG TLR+YLA+KL CDPMRITKKF+G+SCLGKR++HSS+ R + + S++     +V  A++ L+ LE+R      R+ ++K+    +D  A      +++STPAIDA ++QS      W+ D V
Sbjct:   40 EETEFTTRIIELFNTGLLELPEGATLRSYLAQKLSCDPMRITKKFSGASCLGKRVFHSSTGRQRNSASAVAPSAASVAAAQQELSVLEARFVDACIRSTESKD-ARMIDLEARFLHSHDVVSTPAIDAFIMQSCQP--LWDPDGV 181
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BLAST of NO06G03410 vs. NCBI_GenBank
Match: CBJ29954.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.8 bits (273), Expect = 2.100e-20
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 0 
Query:    8 EEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKLKCDPMRITKKFTGSSCLGKRIYHSSSSRSQCTDSSLTMAVEDAKRHLAQLESRLWQRLERNRDNK 107
            EEE  +  II+YF+ G+L LP+GTTLRAYLA+KL CDPMRITKKFTG++CLGKR+YH S  R+  T      AVE+    LA+LE+R   RLERN++ +
Sbjct:   16 EEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYH-SCERTTATYEVAKQAVEE----LAELEARFQARLERNKEKR 109
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BLAST of NO06G03410 vs. NCBI_GenBank
Match: XP_005856348.1 (hypothetical protein NGA_2018700, partial [Nannochloropsis gaditana CCMP526] >EKU20004.1 hypothetical protein NGA_2018700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 98.2 bits (243), Expect = 6.200e-17
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = 0 
Query:    8 EEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKLKCDPMRITKKFTGSSCLGKRIYHSSS-------SRSQCTDSSLTMAVEDAKRHLAQLESRLWQRLERNRDNKEYM-GCLDYGAG 118
            EEEE++  +I YFN GLL LPEG TLRAY++ KLKCDPMR+TKKFTG+ C+GK+ +  +         R +         V  AK  L +LE R W  LE++ +   Y  G L  G G
Sbjct:  299 EEEEYTARLIYYFNRGLLQLPEGQTLRAYISHKLKCDPMRVTKKFTGACCIGKKAFSGAQQALQPHLQRGEVGQGVAPEDVNRAKEELERLEKRFWTTLEQSEEGYCYRNGVLGLGWG 416
[Close]
BLAST of NO06G03410 vs. NCBI_GenBank
Match: EWM26137.1 (hypothetical protein Naga_100014g82 [Nannochloropsis gaditana])

HSP 1 Score: 98.2 bits (243), Expect = 6.200e-17
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = 0 
Query:    8 EEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKLKCDPMRITKKFTGSSCLGKRIYHSSS-------SRSQCTDSSLTMAVEDAKRHLAQLESRLWQRLERNRDNKEYM-GCLDYGAG 118
            EEEE++  +I YFN GLL LPEG TLRAY++ KLKCDPMR+TKKFTG+ C+GK+ +  +         R +         V  AK  L +LE R W  LE++ +   Y  G L  G G
Sbjct:  399 EEEEYTARLIYYFNRGLLQLPEGQTLRAYISHKLKCDPMRVTKKFTGACCIGKKAFSGAQQALQPHLQRGEVGQGVAPEDVNRAKEELERLEKRFWTTLEQSEEGYCYRNGVLGLGWG 516
[Close]
BLAST of NO06G03410 vs. NCBI_GenBank
Match: XP_002294748.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88108.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 97.8 bits (242), Expect = 8.100e-17
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 0 
Query:    8 EEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKLKCDPMRITKKFTGSSCLGKRIYHSSSSRSQCTDSSLTMAVEDAKRHLAQLESRLWQRLER 102
            EEEEF+  +I+YF++GL+ LPEG TLR YL+EKL+CDPMRITKK+ G+SCLGKRI+H   S            VE AK  + QLE R   RL++
Sbjct:  148 EEEEFTTRVIHYFSSGLMTLPEGKTLRGYLSEKLQCDPMRITKKYAGASCLGKRIHHLCES-----PRFSNQEVEMAKFEIEQLEERFHLRLKQ 236
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BLAST of NO06G03410 vs. NCBI_GenBank
Match: OEU05753.1 (hypothetical protein FRACYDRAFT_258386 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 93.6 bits (231), Expect = 1.500e-15
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 0 
Query:    8 EEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKLKCDPMRITKKFTGSSCLGKRIYHSSSSRSQCTDSSLTMAVEDAKRHLAQLESRLWQRLERNR 104
            EEEE++  II YF+TGLL LP+G TLR+YLA+KL CDPMRITKKFTG+ CLG+R YH    R + + +     VE A   L  LE R   R+E  +
Sbjct:   64 EEEEYTSRIIQYFSTGLLTLPDGATLRSYLADKLNCDPMRITKKFTGACCLGRRAYH-LRDRPRASFAE----VEMANLELLHLERRFRLRVEHEQ 154
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BLAST of NO06G03410 vs. NCBI_GenBank
Match: XP_002184223.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44401.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 92.0 bits (227), Expect = 4.500e-15
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 0 
Query:    8 EEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKLKCDPMRITKKFTGSSCLGKRIYHSSSSRSQCTDSSLTMAVEDAKRHLAQLESRLWQRLE 101
            EEEE++  II+YF+TG + LPEG+TLR+YLA+KL CDPMRITKK+ G+SCLG+R+Y     R Q T +     ++ AK  L  LE R   R+E
Sbjct:  135 EEEEYTSRIIHYFSTGFISLPEGSTLRSYLADKLNCDPMRITKKYAGASCLGRRVY-QFRDRVQPTMTE----IQIAKAELDHLERRFRLRVE 222
[Close]
BLAST of NO06G03410 vs. NCBI_GenBank
Match: GAX20270.1 (hypothetical protein FisN_6Hh221 [Fistulifera solaris])

HSP 1 Score: 89.0 bits (219), Expect = 3.800e-14
Identity = 47/93 (50.54%), Postives = 60/93 (64.52%), Query Frame = 0 
Query:    8 EEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKLKCDPMRITKKFTGSSCLGKRIYHSSSSRSQCTDSSLTMAVEDAKRHLAQLESRLWQRLE 101
            EEEE++  II+YF+TGLL LPEG TLR+YLAEKL CDPMRITKK+ G++CLG+R Y                 ++ A+  L  LE R   R+E
Sbjct:  141 EEEEYTSRIIHYFSTGLLILPEGYTLRSYLAEKLNCDPMRITKKYAGAACLGRRAYQYREHAPPTIGE-----IQLARTQLDDLEHRFRMRVE 228
[Close]
BLAST of NO06G03410 vs. NCBI_GenBank
Match: GAX09406.1 (hypothetical protein FisN_6Lh221 [Fistulifera solaris])

HSP 1 Score: 89.0 bits (219), Expect = 3.800e-14
Identity = 47/93 (50.54%), Postives = 60/93 (64.52%), Query Frame = 0 
Query:    8 EEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKLKCDPMRITKKFTGSSCLGKRIYHSSSSRSQCTDSSLTMAVEDAKRHLAQLESRLWQRLE 101
            EEEE++  II+YF+TGLL LPEG TLR+YLAEKL CDPMRITKK+ G++CLG+R Y                 ++ A+  L  LE R   R+E
Sbjct:  104 EEEEYTSRIIHYFSTGLLILPEGHTLRSYLAEKLNCDPMRITKKYAGAACLGRRAYQYREHAPPTIGE-----IQLARTQLDDLEHRFRMRVE 191
The following BLAST results are available for this feature:
BLAST of NO06G03410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26332.18.900e-4867.86hypothetical protein Naga_100078g19 [Nannochlorops... [more]
XP_009043471.12.400e-2446.90hypothetical protein AURANDRAFT_69453, partial [Au... [more]
CBJ29954.12.100e-2057.58conserved unknown protein [Ectocarpus siliculosus][more]
XP_005856348.16.200e-1744.92hypothetical protein NGA_2018700, partial [Nannoch... [more]
EWM26137.16.200e-1744.92hypothetical protein Naga_100014g82 [Nannochlorops... [more]
XP_002294748.18.100e-1754.26predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU05753.11.500e-1553.13hypothetical protein FRACYDRAFT_258386 [Fragilario... [more]
XP_002184223.14.500e-1552.69predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX20270.13.800e-1450.54hypothetical protein FisN_6Hh221 [Fistulifera sola... [more]
GAX09406.13.800e-1450.54hypothetical protein FisN_6Lh221 [Fistulifera sola... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000137NSK000137Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03410.2NO06G03410.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G03410.1NO06G03410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632076gene_6665Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100078g19gene4194Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03410.2NO06G03410.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G03410.1NO06G03410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03410 ID=NO06G03410|Name=NO06G03410|organism=Nannochloropsis oceanica|type=gene|length=2935bp
AGGAAAGGCGGCGTGGCGGGGTTGACTAGGCCATGTTTCCCTGACCATTG
CCACGTCGAAGCACTCACCCCCGACCCTATGACAACTCATCTACAGCACG
AGGAGGAAGAATTCTCACAGAGCATCATCAATTATTTCAACACGGGTCTC
CTGCCCTTGCCGGAGGGCACCACGCTCCGTGCTTACCTGGCGGAAAAGCT
CAAGTGgtaagtgccaagtcagcccctggaggaaggagtgcccacttctc
ccccaccccaagagccccaccctacccccacatgacccttttttggtcac
cgttacgcactttttcacacctctgcggcgtccttacctgcatgcaatgc
ctgctcgtggatggaggtggtgctttcatcagcataggggggtgacgtgg
gcagggcgcggacctacactcctccaaaagaacgtcccgctaccacctgc
accaccacgcatacaccacacacgcatagacaaaatctgcgcgaatcttg
aagcacggcaaaatattttcaagtcatggacatgcgcactgcctgggctg
aggtggcccattcacatgcgtgccctgtcctcaggcctacccctcctttc
ctcgccccctaccttccaatcatccctgtagcactcatctacaccaaatc
tcctacccaacacccgcatacagatactactgtctgtttcggcatcctga
gagaccctctttctggccttcccactcctgacaccccccctccgtcatcc
cccctctcctcacacagCGACCCTATGCGTATCACCAAGAAGTTCACCGG
CTCCTCCTGCCTGGGCAAGCGCATCTACCACTCTTCCTCGTCCCGCTCTC
AGTGCACGGACAGCAGCCTGACCATGGCTGTTGAGGATGCCAAGAGGCAC
TTAGCACAGTTGGAGTCGCGGCTGTGGCAGCGTCTGGAGAGAAATAGGGA
TAACAAGGAATATATGGGGTGTTTGGATTATGGTGCGGGTGTGTACGTGC
ACGCAAACATCATCTCTACGCCGGCAATTGACGCATTATTGCTTCAAAGT
CGGAATGATCCTTGTTTCTGGAATGACGATAATGTGGGCGCGTCGACGAA
GTGGGAAGGAGGGGCGGAGGAAGGGGAAGAGGATGAAGAGGAGGAGGAGG
AGGACATGCCGTCACATTTTGTTGTGGCACGTCAGGCGAGGGAAGCCGCG
AGATGGGGGGCTGAAGGGGCCGTAGGAGGGTGGGTGTCGATGGGTGTTGG
ACCGCCGGTGAGGGCGATTTCGTCCTCCTCCTCGTCCTCCTCCTCGTCCA
ATTCCTCCAAATGCAGTACCACAAGTTGTGATAGCTACAGCACATCTTAT
TCGTCTTCTCAATACCTGGAGATAGAGAGGTATTCCACTGACCCTCAAAA
TCAGCTTCTGTCTGGCACAACCGACACCAGGAGAAGCAGCAGTTTCAGCA
GCAGCAGCAGTAGCAGCAGTAGCAGCAGCAGCAGTTTGAGCAGTAACATC
AGCAGTCTGAAGCGTCGCCGGCTTGCCGTGCCATCTGCCACTTCTACCGA
TGTCGAAGAGGAAGAGGATGACGAGGAATGGAGGGGATTGGGAAAAGACT
GTGATTGGAGCATGCCTAGGGATGAGGAAGACATTTTCGTTCAGCAATGT
AGGCAGCCGGAGATAGACGTGAGTGGAGAGGAGGGGGAGGAGAGCGAGGA
CGAAGAAGAGAAGAAAGCGGGAGGGGCATTAATGCAGGTGGTGAGTCAAA
TTCGCAAGAGTGGGAGTCATCAGGATATGGTCGACTTTGTGTGTGAGGTG
AACGTGAAGATGGAGGGCGAGGGAGAGGGGAAAAGGGAGGGGGAGGTGCT
GGTGGAGTGTTAAGGGAGGGAGGGATGGAAGAAGGACGGAGCAAAGGATG
GGCCATGTACATACGAACTAAGGTGCTCCACCTCCCCCTTCCTATCTACT
GTTTGTGCTTCGACCCATAGATTGTCTCGATCTTTGATGTCTCCACAACG
ACCTACCGAGCACCGAGCGTTGGCATATTCGATACGTTTTTGATACTTTT
ACATATGTATGTCTGTATGCAAGTGTGTGAGGCTTTTTTGAATGTTTTAT
TTTTTGAATGTTGAATTATCCTTCCAGTTTCCCAACCCATTTCTCCCGTG
CCTTCTGCGAAGGCGGGAAACCATGCCGGGAACCTATCACCATATTCTGT
GATGAGCGGGGTTGAATTGATATGATAGCCATATTTTGTGATGACAGGCT
CGCAATTAGTAATATTCGGTGATGAAGATCTTGCATTAATTCGGCCCTGG
CACACGGCACTTGCTTTTTCCAAAGCTGCGCCGGCCTACATGCCTTGGCC
CCTGACCCCATCCCTTGGGCGAGAGGGAGGAATGGATGCCGCCCTGTTGG
ACTGGGGTGTGTTTATCTTCTATTAGTATTGAATGTTTTCATATATTGAT
CTTCTGTTTGAAATTTGTCTTTTCTGGTTCTGAGGGAAAAGGTGAGCGGA
GGGAGCGAGGGAGTGAGGGAGGCGGGGTAAAATGGAAATAGAGGGGGGGG
GATAGATCAAGAAAGGATGGCAGAGGAAACGCAAGGGCGAACAACGACAG
AAAGACAGAGAGACTGAAGGTCGCGCGGGGTCAAGAGTTTTTCTGACTCT
TAGTGTGAAGACGTGAGACACCAGAAGGAAACGGGAAATCACGAAGAAAA
GGAAGGATGAGAAGAACCACAACAAGAACACGAAAAACACGAAAAATATA
AGTGGGAGAGAAAGAGGAGAAGGAAGAAGAGGACGAGGAGTGGAATGAAC
GAGAGTCAAGTGGATTTATTACTCAAGATGAGGGGATGGAGAACAAGGCT
AAGACCAACGAAGCAGACGCAGAGCATATTGGAAAACATCAGAAAACCCC
AAAAAAGAGAAGCTTAAGACTTCACTGAACCACAC
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protein sequence of NO06G03410.2

>NO06G03410.2-protein ID=NO06G03410.2-protein|Name=NO06G03410.2|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MPALDRANLRKGKWTHEEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKL
KCDPMRITKKFTGSSCLGKRIYHSSSSRSQCTDSSLTMAVEDAKRHLAQL
ESRLWQRLERNRDNKEYMGCLDYGAGVYVHANIISTPAIDALLLQSRNDP
CFWNDDNVGASTKWEGGAEEGEEDEEEEEEDMPSHFVVARQAREAARWGA
EGAVGGWVSMGVGPPVRAISSSSSSSSSSNSSKCSTTSCDSYSTSYSSSQ
YLEIERYSTDPQNQLLSGTTDTRRSSSFSSSSSSSSSSSSSLSSNISSLK
RRRLAVPSATSTDVEEEEDDEEWRGLGKDCDWSMPRDEEDIFVQQCRQPE
IDVSGEEGEESEDEEEKKAGGALMQVVSQIRKSGSHQDMVDFVCEVNVKM
EGEGEGKREGEVLVEC*
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protein sequence of NO06G03410.1

>NO06G03410.1-protein ID=NO06G03410.1-protein|Name=NO06G03410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MTTHLQHEEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKLKCDPMRITK
KFTGSSCLGKRIYHSSSSRSQCTDSSLTMAVEDAKRHLAQLESRLWQRLE
RNRDNKEYMGCLDYGAGVYVHANIISTPAIDALLLQSRNDPCFWNDDNVG
ASTKWEGGAEEGEEDEEEEEEDMPSHFVVARQAREAARWGAEGAVGGWVS
MGVGPPVRAISSSSSSSSSSNSSKCSTTSCDSYSTSYSSSQYLEIERYST
DPQNQLLSGTTDTRRSSSFSSSSSSSSSSSSSLSSNISSLKRRRLAVPSA
TSTDVEEEEDDEEWRGLGKDCDWSMPRDEEDIFVQQCRQPEIDVSGEEGE
ESEDEEEKKAGGALMQVVSQIRKSGSHQDMVDFVCEVNVKMEGEGEGKRE
GEVLVEC*
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Synonyms
Publications