NO06G03400, NO06G03400 (gene) Nannochloropsis oceanica

Overview
NameNO06G03400
Unique NameNO06G03400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1281
Alignment locationchr6:939525..940805 +

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Properties
Property NameValue
DescriptionDna replication complex gins protein psf2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:939525..940805 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR036224GINS_bundle-like_dom_sf
IPR007257GINS_Psf2
IPR021151GINS_complex
Homology
BLAST of NO06G03400 vs. NCBI_GenBank
Match: EWM26323.1 (dna replication complex gins protein psf2 [Nannochloropsis gaditana])

HSP 1 Score: 339.3 bits (869), Expect = 9.500e-90
Identity = 190/236 (80.51%), Postives = 205/236 (86.86%), Query Frame = 0
Query:    8 LAVRAGSSEMEFLAEETMIEIEARFNHPPLKLIRGTFGPFYPNQRAQVPLWLALTLKKQMKCRVVLPDWLDGESLAEVLKEERAQEGTFQDLPFHYVEIATLLLKTAGDEFVMPDRIRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRNFLTQAMNMFYVLSGQEVVXXXXXXXXXXXXXXXXXXXXXXXXXXXVSG-NGPPRKLRRFREDAPSEGTN 243
            +A ++ SSEMEFLAEE ++EIEARFNHPPLKLIRGTFGPFYPNQRA+VPLWL L+LKKQ KCR+VLP+WLD E LAEVL++ERAQEG FQDLPF+YVEIATLLL TA DEF MPDR RSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVR FLT+AM +FY LSGQEVV          XXXXXXXXXXXXXXX   SG NGPPRKLRRFRE+A  EGTN
Sbjct:    1 MAAQSRSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGGREGGVXXXXXXXXXXXXXXXRTGSGRNGPPRKLRRFREEAAREGTN 236          
BLAST of NO06G03400 vs. NCBI_GenBank
Match: CBJ27440.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 171.4 bits (433), Expect = 3.400e-39
Identity = 83/177 (46.89%), Postives = 120/177 (67.80%), Query Frame = 0
Query:   14 SSEMEFLAEETMIEIEARFNHPPLKLIRGTFGPFYPNQRAQVPLWLALTLKKQMKCRVVLPDWLDGESLAEVLKEERAQEGTFQDLPFHYVEIATLLLKTAGDEFVMPDRIRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRNFLTQAMNMFYVLSGQE 191
            ++E+EF+AE+ +IEI  +F H PL LI+G FGPF P  RA+VPLWLA+TLKK+ KC++  P ++    L +VL+ ER     F  LP HY+EIA+LLL TA D+   PDR+R+L+ED+ENVR  K+  G+   +  V +     + K+N +GAME+  VR+F  +A+   YV+SGQ+
Sbjct:   14 AAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQ-----AVKVNDLGAMELLPVRSFFAEALASLYVVSGQK 185          
BLAST of NO06G03400 vs. NCBI_GenBank
Match: OWY98286.1 (DNA replication complex GINS protein PSF2 [Phytophthora megakarya])

HSP 1 Score: 158.7 bits (400), Expect = 2.300e-35
Identity = 82/178 (46.07%), Postives = 118/178 (66.29%), Query Frame = 0
Query:   14 SSEMEFLAEETMIEIEARF----NHPPLKLIRGTFGPFYPNQRAQVPLWLALTLKKQMKCRVVLPDWLDGESLAEVLKEERAQEGTFQDLPFHYVEIATLLLKTAGDEFVMPDRIRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRNFLTQAMNMFYVLS 188
            +SE EFLAE+ +I I   F    N+  L LI G FGPF P     VPLWLA+ LK+  KCR++ P WL  E L   L+ E+A E  F++LPFHY+EIA+LLLK A ++    + +RSL+ED++NVR +KIR GL  ++  V  G + ++ +MN++ A+EI++VR F+  ++N FY LS
Sbjct:    6 ASETEFLAEQELIAIMPHFHLRDNNAMLNLISGDFGPFQPGITTHVPLWLAIMLKQLNKCRILAPSWLSVEYLTSRLEREKASE-AFEELPFHYLEIASLLLKNAPEDLDQGEHLRSLLEDLQNVRQDKIRNGLAKIAGDVQGGGTALAIQMNNISALEISSVREFMLGSLNQFYQLS 182          
BLAST of NO06G03400 vs. NCBI_GenBank
Match: XP_008614879.1 (hypothetical protein SDRG_10656 [Saprolegnia diclina VS20] >EQC31480.1 hypothetical protein SDRG_10656 [Saprolegnia diclina VS20])

HSP 1 Score: 157.1 bits (396), Expect = 6.700e-35
Identity = 85/189 (44.97%), Postives = 120/189 (63.49%), Query Frame = 0
Query:   11 RAGSSEMEFLAEETMIEI----EARFNHPPLKLIRGTFGPFYPNQRAQVPLWLALTLKKQMKCRVVLPDWLDGESLAEVLKEERAQEGTFQDLPFHYVEIATLLLKTAGDEFVMPDRIRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRNFLTQAMNMFY---VLSGQEVV 193
            R  SSEMEFLAE+ ++ +    E + N   L  I G FGPF+P+    VPLWLA+ LK+  KCR++ P W   E L E L+ E   E  F+ LPFHY+EIATLLLK A D+    +++R ++EDI++ R EKIR GL  ++  V  G S  + ++N+V AMEI +VR F+T+++  FY   V+ G EV+
Sbjct:   71 RMRSSEMEFLAEQELVSVMPFFELKENGGLLHGISGDFGPFHPSMATHVPLWLAIKLKQLNKCRILQPSWFTVEHLMERLEGENTSE-AFESLPFHYLEIATLLLKNAPDDMEQAEKMRLILEDIQHTRQEKIRNGLCVLAKDVQTGGSAHAVQLNNVAAMEINSVRQFMTKSLKKFYELNVMGGAEVI 258          
BLAST of NO06G03400 vs. NCBI_GenBank
Match: OQR93485.1 (DNA replication complex GINS protein PSF2 [Achlya hypogyna])

HSP 1 Score: 154.8 bits (390), Expect = 3.300e-34
Identity = 82/181 (45.30%), Postives = 119/181 (65.75%), Query Frame = 0
Query:   14 SSEMEFLAEETMIEI----EARFNHPPLKLIRGTFGPFYPNQRAQVPLWLALTLKKQMKCRVVLPDWLDGESLAEVLKEERAQEGTFQDLPFHYVEIATLLLKTAGDEFVMPDRIRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRNFLTQAMNMFYVLSGQE 191
            SSEMEFLAE+ +I I    E + N   L  I G FGPF+P+  AQVPLWLA+ LK+  KCR++ P W   E L E ++ E + E  F+ LPFHY+E+ATLLLK A  +    +++R ++EDI+++R +KIR GL  +++ V  G S  + ++N+V AMEI +VR F+T ++  FY L+  E
Sbjct:    6 SSEMEFLAEQELISIMPFFELKENAGMLHGISGDFGPFHPSMAAQVPLWLAIKLKQLNKCRIIQPSWFTVEHLMERMEGEGSSE-LFESLPFHYLEVATLLLKHAAADMEQAEKMRLILEDIQHLRQDKIRNGLCRIANDVQTGGSAYAVQLNNVAAMEINSVRQFMTGSLKKFYELNALE 185          
BLAST of NO06G03400 vs. NCBI_GenBank
Match: GAY03222.1 (Hypothetical protein PINS_011054 [Pythium insidiosum])

HSP 1 Score: 152.5 bits (384), Expect = 1.700e-33
Identity = 77/178 (43.26%), Postives = 118/178 (66.29%), Query Frame = 0
Query:   14 SSEMEFLAEETMIEIEARF----NHPPLKLIRGTFGPFYPNQRAQVPLWLALTLKKQMKCRVVLPDWLDGESLAEVLKEERAQEGTFQDLPFHYVEIATLLLKTAGDEFVMPDRIRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRNFLTQAMNMFYVLS 188
            +SE+EFLAE+ +I+I   F    N   L  I G FGPF P    +VPLWLA+ LK+  KCR++ P W   + L++ L+ E+  +  F++LPFHY+EIA+LL K A ++    + IRSL+EDI+NVR +KIR GL  +++ V  G +  + +MN++GA+E+ +VR F+  ++N FY L+
Sbjct:   11 ASEIEFLAEQELIDIIPHFGIRENDGVLNFISGDFGPFQPGITTRVPLWLAIMLKQLNKCRIIEPSWFSVDYLSQRLEREKDSD-VFEELPFHYLEIASLLFKHAAEDIEQIEHIRSLLEDIQNVRQDKIRNGLYKIANDVQSGGTAYAIQMNNIGALEVNSVRQFMIGSLNKFYRLA 187          
BLAST of NO06G03400 vs. NCBI_GenBank
Match: XP_017240516.1 (PREDICTED: DNA replication complex GINS protein PSF2 [Daucus carota subsp. sativus])

HSP 1 Score: 152.1 bits (383), Expect = 2.200e-33
Identity = 81/179 (45.25%), Postives = 110/179 (61.45%), Query Frame = 0
Query:   14 SSEMEFLAEETMIEIEARFNHPPLKLIRGTFGPFYPNQRAQVPLWLALTLKKQMKCRVVLPDWLDGESLAEVLKEERAQEGTFQDLPFHYVEIATLLLKTAGDEFVMPDRIRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRNFLTQAMNMFYVLSGQEVV 193
            ++E+EFLAE+ M+EI       PL LI G FGPF P    QVPLWLA+ LKK+ KC + LPDW+  E L +VL+ ER     FQ LPFHYVEIA LL   A D+      +RSL+EDI++VR  KI  GL+ +S+         + K+ ++ AME+  VR F+ +A+  FY L   E++
Sbjct:   14 AAELEFLAEDEMVEIVPNIRMDPLNLISGDFGPFRPQIATQVPLWLAVALKKRGKCTIRLPDWMSVEKLTQVLEAERDSARDFQPLPFHYVEIARLLFDHARDDIPDIYMVRSLIEDIKDVRFHKIGTGLEIISE------RTYAVKLLNLSAMEVNIVRPFVAKALETFYKLDSPEMI 186          
BLAST of NO06G03400 vs. NCBI_GenBank
Match: XP_012203277.1 (hypothetical protein SPRG_08643 [Saprolegnia parasitica CBS 223.65] >KDO25990.1 hypothetical protein SPRG_08643 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 151.8 bits (382), Expect = 2.800e-33
Identity = 81/181 (44.75%), Postives = 116/181 (64.09%), Query Frame = 0
Query:   11 RAGSSEMEFLAEETMIEI----EARFNHPPLKLIRGTFGPFYPNQRAQVPLWLALTLKKQMKCRVVLPDWLDGESLAEVLKEERAQEGTFQDLPFHYVEIATLLLKTAGDEFVMPDRIRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRNFLTQAMNMFYVLS 188
            R  SSEMEFLAE+ +I +    E + N   L  I G +GPF+P+    VPLWLA+ LK+  KCR++ P W   E L E L+ E   E  F+ LPFHY+E+ATLLLK A D+    +++R ++EDI++ R EKIR GL  ++  V  G S  + ++N+V AMEI +VR F+T+++  FY L+
Sbjct:    3 RMRSSEMEFLAEQELISVMPFFELKENGGLLHGIGGDYGPFHPSMATPVPLWLAIKLKQLNKCRILQPSWFTVEHLMERLEGENTSE-AFESLPFHYLEMATLLLKNAPDDMEQAEKMRLILEDIQHTRQEKIRNGLCVLAKDVQTGGSAHAVQLNNVAAMEINSVRQFMTKSLKKFYELN 182          
BLAST of NO06G03400 vs. NCBI_GenBank
Match: XP_009522602.1 (hypothetical protein PHYSODRAFT_328060 [Phytophthora sojae] >EGZ19885.1 hypothetical protein PHYSODRAFT_328060 [Phytophthora sojae])

HSP 1 Score: 150.6 bits (379), Expect = 6.300e-33
Identity = 80/179 (44.69%), Postives = 115/179 (64.25%), Query Frame = 0
Query:   14 SSEMEFLAEETMIEIEARF----NHPPLKLIRGTFGPFYPNQRAQVPLWLALTLKKQMKCRVVLPDWLDGESLAEVLKEERAQEGTFQDLPFHYVEIATLLLKTAGDEFVMPDRIRSLVEDIENVRMEKIRRGLQGMS-DTVLRGRSVMSTKMNHVGAMEITTVRNFLTQAMNMFYVLS 188
            +SE EFLAE+ +I I   F    N+  L  I G FGPF P     VPLWLA+ LK+  KCR++ P WL  + L   L+ E+A +  F++LPFHY+E+A+LLLK A ++    + +RSL+ED++NVR +KIR GL  ++ D V  G S    +MN++ A+EI +VR F+  ++N FY LS
Sbjct:    6 ASETEFLAEQELIAILPHFHLRDNNGMLNFISGDFGPFQPGITTHVPLWLAIMLKQLNKCRILAPSWLSVDYLMSRLEREKASD-AFEELPFHYLEVASLLLKNAPEDLDQGEHLRSLLEDLQNVRQDKIRNGLSRIAGDVVQSGGSASVIQMNNISALEINSVREFMIGSLNQFYRLS 183          
BLAST of NO06G03400 vs. NCBI_GenBank
Match: XP_024573904.1 (dna replication complex gins protein psf2 [Plasmopara halstedii] >CEG37535.1 dna replication complex gins protein psf2 [Plasmopara halstedii])

HSP 1 Score: 150.6 bits (379), Expect = 6.300e-33
Identity = 77/178 (43.26%), Postives = 116/178 (65.17%), Query Frame = 0
Query:   14 SSEMEFLAEETMIEIEARF----NHPPLKLIRGTFGPFYPNQRAQVPLWLALTLKKQMKCRVVLPDWLDGESLAEVLKEERAQEGTFQDLPFHYVEIATLLLKTAGDEFVMPDRIRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRNFLTQAMNMFYVLS 188
            +SE EFLAE+ +I I   F    ++  L  I G FGPF P     VPLWLA+ LK+  KCR++ P WL  + L+  L+ E+  E  F++LPFHY+EIA+LLL+ A ++    + +R L+ED++NVR +KIR GL  ++  V  G + ++ +MN++ A+EIT+VR F+  ++N FY LS
Sbjct:    6 ASETEFLAEQELIMIMPHFHLRDHNGMLNFICGNFGPFQPGMTMHVPLWLAIMLKQVHKCRILAPSWLSVDYLSAQLEREKTSE-VFEELPFHYLEIASLLLQNAPEDLEQSEHLRILLEDLQNVRQDKIRNGLAKIALDVQNGGTALAIQMNNISALEITSVREFMLGSLNQFYQLS 182          
The following BLAST results are available for this feature:
BLAST of NO06G03400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26323.19.500e-9080.51dna replication complex gins protein psf2 [Nannoch... [more]
CBJ27440.13.400e-3946.89conserved unknown protein [Ectocarpus siliculosus][more]
OWY98286.12.300e-3546.07DNA replication complex GINS protein PSF2 [Phytoph... [more]
XP_008614879.16.700e-3544.97hypothetical protein SDRG_10656 [Saprolegnia dicli... [more]
OQR93485.13.300e-3445.30DNA replication complex GINS protein PSF2 [Achlya ... [more]
GAY03222.11.700e-3343.26Hypothetical protein PINS_011054 [Pythium insidios... [more]
XP_017240516.12.200e-3345.25PREDICTED: DNA replication complex GINS protein PS... [more]
XP_012203277.12.800e-3344.75hypothetical protein SPRG_08643 [Saprolegnia paras... [more]
XP_009522602.16.300e-3344.69hypothetical protein PHYSODRAFT_328060 [Phytophtho... [more]
XP_024573904.16.300e-3343.26dna replication complex gins protein psf2 [Plasmop... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000138NSK000138Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03400.1NO06G03400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672533gene_6664Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100078g18gene4195Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03400.1NO06G03400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03400 ID=NO06G03400|Name=NO06G03400|organism=Nannochloropsis oceanica|type=gene|length=1281bp
ACAGGCCCGGAAGATTAACGTACCTGCTTGGCGCACCATGACCATACCTC
AAGATGCCCTGGCTGTGCGGGCGGGGTCCAGTGAGATGGAGTTCCTGgta
cgttttgctgacggcctgttgtgaaagagtgtcggtgggagtaatgctga
ggccttgtcttcctgcgttttatgtaacttgcgagctctatcacgatctt
agtgaggttattatgttttttttttccacgtttgctcgcactgaatgaac
cggcgatggggttgggacggtctatccctgggattgaaagccaggcgcaa
tggcctcgtccctctcttcctttatagcaccccgctgcattcgcgatccg
tctcttcttcctcgtttacccaaccagaagcaagtctagcccccttcgtt
acatccatttccactcttgtccccttattcccctcctcatcctccacctt
ccaccgtacagGCTGAAGAAACTATGATTGAAATCGAAGCCCGCTTCAAC
CACCCACCCCTCAAGCTCATTCGCGGAACCTTCGGACCTTTCTACCCAAA
TCAACGCGCGCAAGTTCCTCTATGGCTGGCCTTAACCCTTAAAAAACAAA
TGAAGTGTCGAGTGGTGCTGCCGGATTGGTTGGACGGAGAGAGCTTGGCA
GAGGTTTTGAAGGAGGAAAGGGCGCAGGAAGGGACGTTTCAAGACTTGCC
GTTTCATTATGTGGAAATTGCAACGTTGTTGCTCAAGACGGCAGGGGATG
AATTTGTGATGCCCGATAGGATTCGGAGTCTGGTGGAGGATATTGAGAAT
GTGCGGATGGAGAAGATAAGACGAGGTTTGCAGGGAATGAGCGATACGGT
GTTGAGGGGGAGGAGTGTCATGAGCACGAAAATGAACCATGTGGGTGCAA
TGGAGATAACCACAGTTAGGAATTTCTTGACACAGGCCATGAACATGTTT
TACGTATTGAGCGGGCAGGAGGTGGTGGGGGAAGGGGGTGGTGGAAGACG
GTTAGGGGCGGGGGGGGCGGCTGCTGTGGCGGCGGCGGCTACGGGGGGAG
GCAGGGGAGTGAGTGGAAATGGGCCACCGAGGAAATTGAGGAGGTTTCGG
GAGGATGCGCCCAGCGAGGGGACGAATTAATGAACTAATACATGTGTAAA
AAAGAAAAAGAAAGACTTTAGGTGAAAGCAAGAGAAGAAGAAGGGGAGAG
AGAACAATAAAGAAAAAATGAAAGAAGAGGTGGAAGAGACGAGACGCAGG
AGAAGGCGAAAATTGCCATTGGTAAGTACGT
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protein sequence of NO06G03400.1

>NO06G03400.1-protein ID=NO06G03400.1-protein|Name=NO06G03400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MTIPQDALAVRAGSSEMEFLAEETMIEIEARFNHPPLKLIRGTFGPFYPN
QRAQVPLWLALTLKKQMKCRVVLPDWLDGESLAEVLKEERAQEGTFQDLP
FHYVEIATLLLKTAGDEFVMPDRIRSLVEDIENVRMEKIRRGLQGMSDTV
LRGRSVMSTKMNHVGAMEITTVRNFLTQAMNMFYVLSGQEVVGEGGGGRR
LGAGGAAAVAAAATGGGRGVSGNGPPRKLRRFREDAPSEGTN*
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Synonyms
Publications