NO06G03370, NO06G03370 (gene) Nannochloropsis oceanica

Overview
NameNO06G03370
Unique NameNO06G03370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length621
Alignment locationchr6:930383..931003 +

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Properties
Property NameValue
DescriptionUbiquitin-like protein ATG12
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:930383..931003 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000045autophagosome assembly
GO:0006914autophagy
GO:0000045autophagosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR007242Atg12
Homology
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BLAST of NO06G03370 vs. NCBI_GenBank
Match: EWM26340.1 (ubiquitin-like protein atg12 [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 1.200e-29
Identity = 89/165 (53.94%), Postives = 107/165 (64.85%), Query Frame = 0 
Query:   50 ASAMASFSIASTPQEEAEEGGDRG-TISAALDASQEGTPPSTLDDSNTAKSVTI----SSQPSA---PSTTPAVTNTGKVKVQLMAVGRAPRLAQSKFIVQAKDSFRALLPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYSLDEAWG 207
            + A ++   A+TP   +  GG  G   S     S  GT       ++TA S +     S+Q SA   P  T A  +  +VK+QLMAVGRAPRL QSKF VQA + FRAL PVLRRLLQL+E +ALF+FVNSAFAPAPEDKFGDL  CF + G LI+NYSLDEAWG
Sbjct:   50 SQATSTALTAATPAMCSRPGGPAGEDFSMNASTSTGGTVDLLRPSASTASSPSAPTPQSTQHSASLCPGQT-APAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
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BLAST of NO06G03370 vs. NCBI_GenBank
Match: XP_002291258.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED91365.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 100.5 bits (249), Expect = 6.400e-18
Identity = 45/90 (50.00%), Postives = 65/90 (72.22%), Query Frame = 0 
Query:  117 NTGKVKVQLMAVGRAPRLAQSKFIVQAKDSFRALLPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYSLDEAWG 207
            +T +VKV  +AVG AP L +SKF++  +D F      LRRLL+L    +LFL++N+AF P+P+++ GDL++CFG  G L+V+YSL EAWG
Sbjct:    2 STSRVKVHFVAVGSAPILKKSKFLIGEEDEFGVATAFLRRLLRLDSAPSLFLYINAAFVPSPDERIGDLYDCFGVRGELVVHYSLQEAWG 91
[Close]
BLAST of NO06G03370 vs. NCBI_GenBank
Match: XP_016605347.1 (hypothetical protein SPPG_07236 [Spizellomyces punctatus DAOM BR117] >KNC97307.1 hypothetical protein SPPG_07236 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 89.7 bits (221), Expect = 1.100e-14
Identity = 56/147 (38.10%), Postives = 81/147 (55.10%), Query Frame = 0 
Query:   72 RGTISAALDASQEGTPP--STLDDSNTAKS------VTISSQPSAPSTTPAVTNT----GKVKVQLMAVGRAPRLAQSKFIVQAKDSFRALLPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYSLDEAWG 207
            RG  S ++  S+  TP   +TLD     +S       T+S  P++P ++P    T     KV V+  A G AP L Q+ + + A   F+ ++  LR+ L  +    LFL+VNSAFAPAP++  G+L+ CFG  G LI+NYS   AWG
Sbjct:    2 RGLHSRSILTSKRDTPTRLTTLDRFGCVRSPSASIVFTMSDNPTSPISSPPTPRTANPAAKVVVRFRATGNAPILKQNFYKITASQKFQTVMNFLRKELNYKAQDPLFLYVNSAFAPAPDEIVGNLYKCFGTEGNLIINYSTTAAWG 148
[Close]
BLAST of NO06G03370 vs. NCBI_GenBank
Match: XP_013241092.1 (autophagy protein 12 [Tilletiaria anomala UBC 951] >KDN39611.1 autophagy protein 12 [Tilletiaria anomala UBC 951])

HSP 1 Score: 89.0 bits (219), Expect = 1.900e-14
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0 
Query:  117 NTGKVKVQLMAVGRAPRLAQSKFIVQAKDSFRALLPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYSLDEAWG 207
            +T KV V+  A+G AP +  + F + A + F+A++  LR+ L  +   ALFL++NS+F+PAP+D  G+LF+CFG  G LIVNYS   AWG
Sbjct:   14 DTTKVVVRFKAIGNAPIMRNNYFRITAFNKFQAVIQFLRKELAWKASDALFLYINSSFSPAPDDTVGNLFHCFGTEGHLIVNYSSTAAWG 103
[Close]
BLAST of NO06G03370 vs. NCBI_GenBank
Match: XP_007878205.1 (hypothetical protein PFL1_02497 [Anthracocystis flocculosa PF-1] >EPQ29824.1 hypothetical protein PFL1_02497 [Anthracocystis flocculosa PF-1])

HSP 1 Score: 87.0 bits (214), Expect = 7.300e-14
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 0 
Query:  117 NTGKVKVQLMAVGRAPRLAQSKFIVQAKDSFRALLPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYSLDEAWG 207
            +  KV V+  A+G AP +  + F + A + F+A++  LR+ L  +   ALFL++N++F+PAP+D  G+LF CFG  G LIVNYS   AWG
Sbjct:   48 DASKVVVRFKAIGNAPIMKTNYFRITAFNRFQAVIQFLRKELNFKPSDALFLYINASFSPAPDDTVGNLFRCFGTEGHLIVNYSTTAAWG 137
[Close]
BLAST of NO06G03370 vs. NCBI_GenBank
Match: XP_021874422.1 (ubiquitin-like autophagy protein Apg12-domain-containing protein [Kockovaella imperatae] >ORX40743.1 ubiquitin-like autophagy protein Apg12-domain-containing protein [Kockovaella imperatae])

HSP 1 Score: 87.0 bits (214), Expect = 7.300e-14
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 0 
Query:  117 NTGKVKVQLMAVGRAPRLAQSKFIVQAKDSFRALLPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYSLDEAWG 207
            +  KV V+  ++G AP +  + F V A + F+A++  LR  L L++   LF ++N+AFAPAP+D  G+LF CFG  G LIVNYS  +AWG
Sbjct:   36 DASKVVVRFKSIGAAPIMKNNVFKVTAGNKFQAVIVFLRNQLGLKQSDPLFTYINAAFAPAPDDTVGNLFKCFGTEGHLIVNYSNTQAWG 125
[Close]
BLAST of NO06G03370 vs. NCBI_GenBank
Match: OQR82005.1 (CorA Metal Ion Transporter (MIT) Family [Thraustotheca clavata])

HSP 1 Score: 86.7 bits (213), Expect = 9.500e-14
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 0 
Query:  121 VKVQLMAVGRAPRLAQSKFIVQAKDSFRALLPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYSLDEAWG 207
            V +Q  AVG AP + +SKF V   D+   +   LR+ L+LRE+ ALF++ N+AFAP P+ K  +L+ CF   G L++NYS  +AWG
Sbjct:  466 VTIQFTAVGGAPIMKRSKFTVNGSDALGVVYSFLRKQLRLREEDALFVYCNNAFAPTPDQKLSELYECFHVNGILVLNYSRTQAWG 551
[Close]
BLAST of NO06G03370 vs. NCBI_GenBank
Match: SJX63860.1 (probable Autophagy-related protein 12 [Sporisorium reilianum f. sp. reilianum])

HSP 1 Score: 86.7 bits (213), Expect = 9.500e-14
Identity = 48/125 (38.40%), Postives = 70/125 (56.00%), Query Frame = 0 
Query:   88 PSTLDDSNTAKSVTISSQPSAPSTTPAV------TNTGKVKVQLMAVGRAPRLAQSKFIVQAKDSFRALLPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYSLDEAWG 207
            PS   D     + TISS  +  +  P         N+ KV V+  A+G AP +  + F + A + F+A+   LR+ L  +   +LFL++N++F+PAP+D  G+LF CFG  G LIVNYS   AWG
Sbjct:    9 PSQEADRQLGSAATISSTATPSAAAPQALEQYKKRNSSKVVVRFKAIGNAPIMKNNHFRITAFNRFQAVTVFLRKELNFKPTDSLFLYINASFSPAPDDTVGNLFRCFGTEGHLIVNYSTTAAWG 133
[Close]
BLAST of NO06G03370 vs. NCBI_GenBank
Match: CDW93909.1 (hypothetical protein [Sporisorium scitamineum] >CDR87412.1 probable Autophagy-related protein 12 [Sporisorium scitamineum])

HSP 1 Score: 86.3 bits (212), Expect = 1.200e-13
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0 
Query:   86 TPPSTLDDSNTAKSVTISSQPSAPSTTPAVT-----------NTGKVKVQLMAVGRAPRLAQSKFIVQAKDSFRALLPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYSLDEAWG 207
            T P+TL  S  A     S+   +P+T+P+             ++ KV V+  A+G AP +  + F + A + F+A+   LR+ L  +   +LFL++N++F+PAP+D  G+L+ CFG  G LIVNYS   AWG
Sbjct:    2 TTPNTLTPSQEADRQLSSAATISPTTSPSAAALQALEQYKKRDSSKVVVRFKAIGNAPIMKNNHFRITAFNRFQAVTVFLRKELNFKPTDSLFLYINASFSPAPDDTVGNLYRCFGTEGHLIVNYSTTAAWG 133
[Close]
BLAST of NO06G03370 vs. NCBI_GenBank
Match: XP_016273402.1 (autophagy-related protein 12 [Rhodotorula toruloides NP11] >EMS22283.1 autophagy-related protein 12 [Rhodotorula toruloides NP11] >CDR43734.1 RHTO0S08e05050g1_1 [Rhodotorula toruloides])

HSP 1 Score: 85.9 bits (211), Expect = 1.600e-13
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 0 
Query:  120 KVKVQLMAVGRAPRLAQSKFIVQAKDSFRALLPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYSLDEAWG 207
            KV V+  A G AP + Q+ + + A + FRA++  LR+ L  +    LFL++NS+FAPAP+D   DL+ CFG    LIVNYS  +AWG
Sbjct:   48 KVVVRFKATGNAPIMKQNLYKITASNQFRAVIAFLRKELAWKPSDPLFLYINSSFAPAPDDTVADLYKCFGTENHLIVNYSSTQAWG 134
The following BLAST results are available for this feature:
BLAST of NO06G03370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26340.11.200e-2953.94ubiquitin-like protein atg12 [Nannochloropsis gadi... [more]
XP_002291258.16.400e-1850.00predicted protein, partial [Thalassiosira pseudona... [more]
XP_016605347.11.100e-1438.10hypothetical protein SPPG_07236 [Spizellomyces pun... [more]
XP_013241092.11.900e-1446.67autophagy protein 12 [Tilletiaria anomala UBC 951]... [more]
XP_007878205.17.300e-1444.44hypothetical protein PFL1_02497 [Anthracocystis fl... [more]
XP_021874422.17.300e-1445.56ubiquitin-like autophagy protein Apg12-domain-cont... [more]
OQR82005.19.500e-1445.35CorA Metal Ion Transporter (MIT) Family [Thraustot... [more]
SJX63860.19.500e-1438.40probable Autophagy-related protein 12 [Sporisorium... [more]
CDW93909.11.200e-1336.36hypothetical protein [Sporisorium scitamineum] >CD... [more]
XP_016273402.11.600e-1345.98autophagy-related protein 12 [Rhodotorula toruloid... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000141NSK000141Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03370.1NO06G03370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597637gene_6660Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100078g13gene4199Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03370.1NO06G03370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03370 ID=NO06G03370|Name=NO06G03370|organism=Nannochloropsis oceanica|type=gene|length=621bp
ATGGAGAAGGGCAGAAACGCGGCCACATCGGCGTCATCGTCTCAGTCACA
GCAGGAGGAGGATCGATACCAGCAGCAAGCAAGCATTCCCGGGCCAACAG
CGCCAATATTACCACAAGCACCACCAGCTAACGAAACTTGGGATGCTGCA
TCGGCAATGGCGAGCTTTTCTATTGCGTCCACACCGCAGGAGGAGGCAGA
GGAGGGCGGCGACAGGGGCACCATTTCAGCAGCATTGGACGCATCTCAAG
AAGGCACACCACCCAGCACCTTGGACGACAGTAACACTGCCAAAAGTGTG
ACGATTTCCTCCCAACCATCCGCTCCCTCAACCACCCCAGCTGTGACAAA
CACAGGCAAGGTCAAAGTGCAGCTGATGGCCGTCGGCCGCGCCCCTCGTC
TAGCCCAAAGCAAGTTCATAGTGCAAGCCAAGGACTCCTTTCGTGCCTTG
TTACCCGTGCTGCGTCGCTTGCTCCAATTGCGAGAGGACCAGGCGCTGTT
CCTATTTGTGAATTCAGCGTTTGCTCCTGCGCCGGAGGACAAGTTTGGTG
ACTTGTTTAATTGCTTTGGGAAGACTGGCACACTCATTGTCAATTACAGC
TTGGACGAGGCGTGGGGATGA
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protein sequence of NO06G03370.1

>NO06G03370.1-protein ID=NO06G03370.1-protein|Name=NO06G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MEKGRNAATSASSSQSQQEEDRYQQQASIPGPTAPILPQAPPANETWDAA
SAMASFSIASTPQEEAEEGGDRGTISAALDASQEGTPPSTLDDSNTAKSV
TISSQPSAPSTTPAVTNTGKVKVQLMAVGRAPRLAQSKFIVQAKDSFRAL
LPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYS
LDEAWG*
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Synonyms
Publications