NO06G03360, NO06G03360 (gene) Nannochloropsis oceanica

Overview
NameNO06G03360
Unique NameNO06G03360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length294
Alignment locationchr6:929705..929998 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:929705..929998 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G03360 vs. NCBI_GenBank
Match: EWM26328.1 (hypothetical protein Naga_100078g12 [Nannochloropsis gaditana])

HSP 1 Score: 162.2 bits (409), Expect = 8.400e-37
Identity = 78/97 (80.41%), Postives = 88/97 (90.72%), Query Frame = 0 
Query:    1 MRPDLETVLNQLGTASLRLDTGALLSKTGEMDSPAGVEAAQTLYQILLDAGLILQAPQHHGDPLRRVDVQFKSFQYVMTVAKDEVYIVKKTPDDARG 98
            MRPDLETV NQLGTASLRLDTGA+LS+TG+MD+P G EAA TLYQILLD GLIL+AP HHG+ LRR+ VQF+SFQYVMTV+KDEV+IVKKTPDD RG
Sbjct:   47 MRPDLETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTPDDTRG 143
The following BLAST results are available for this feature:
BLAST of NO06G03360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26328.18.400e-3780.41hypothetical protein Naga_100078g12 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000142NSK000142Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03360.1NO06G03360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597636gene_6659Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100078g12gene4200Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03360.1NO06G03360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03360 ID=NO06G03360|Name=NO06G03360|organism=Nannochloropsis oceanica|type=gene|length=294bp
ATGAGACCTGACCTTGAGACGGTGCTCAACCAACTAGGGACAGCATCCCT
GCGCCTCGACACAGGGGCGCTACTATCCAAGACTGGCGAAATGGATTCAC
CCGCGGGGGTGGAAGCTGCCCAGACGCTCTACCAAATACTGCTCGACGCC
GGCTTGATCCTCCAAGCCCCGCAGCACCACGGCGATCCCTTGAGACGCGT
TGACGTCCAATTCAAATCATTTCAGTATGTTATGACTGTGGCTAAGGATG
AGGTCTACATTGTCAAGAAGACGCCGGACGATGCGCGGGGGTAG
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protein sequence of NO06G03360.1

>NO06G03360.1-protein ID=NO06G03360.1-protein|Name=NO06G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MRPDLETVLNQLGTASLRLDTGALLSKTGEMDSPAGVEAAQTLYQILLDA
GLILQAPQHHGDPLRRVDVQFKSFQYVMTVAKDEVYIVKKTPDDARG*
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Synonyms
Publications