NO06G03180, NO06G03180 (gene) Nannochloropsis oceanica

Overview
NameNO06G03180
Unique NameNO06G03180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length778
Alignment locationchr6:895080..895857 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:895080..895857 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO06G03180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL092nonsL092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03180.1NO06G03180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632059gene_6639Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03180.1NO06G03180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03180 ID=NO06G03180|Name=NO06G03180|organism=Nannochloropsis oceanica|type=gene|length=778bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCCCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGgtaaggggtgttgggaggggggggggggaacg
tttggtgcacgcgaccgcatactgcccgagggatgttggttcgtttttat
ctgcacgtctatctcgtttgaggtgcaatctgtgttgtgcggacaagggc
cggtgccaaggtgctcatgcacgagcgcattcatacacgccgacagGGAA
GGGACGCGTACTGCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGCGC
GCACGAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAG
CCCATTGGTGTGGTGGCTGCGGTTGCGGGCTCTACCGCTTACGGCGTCCA
CCATCTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGG
AGGTTGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTATTGAG
GGCGACTGTGCGCGAATCCAGGGTGAGAGCAAGTCGGAGATTGCTCGTAT
CGAAAGCGACCGAAAGTTGTCAGAGCTTTTCTGGAAGGCCGAGGTAGAGC
GGTACAAGCACGACCTCCAACTTGCGCACACGGAAGACTATGAGCCCTAT
CAGGCGGCAGTTTCGAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGT
ATCCGAGGAGGATGAGAAGAAGGGCTAG
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protein sequence of NO06G03180.1

>NO06G03180.1-protein ID=NO06G03180.1-protein|Name=NO06G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFS
SATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKR
IESESKSEVARIQEKAATEVARIEGDCARIQGESKSEIARIESDRKLSEL
FWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKKG*
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Synonyms
Publications