NO06G03090, NO06G03090 (gene) Nannochloropsis oceanica

Overview
NameNO06G03090
Unique NameNO06G03090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length651
Alignment locationchr6:878904..879554 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:878904..879554 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO06G03090 vs. NCBI_GenBank
Match: EWM19988.1 (hypothetical protein Naga_102432g1 [Nannochloropsis gaditana])

HSP 1 Score: 67.0 bits (162), Expect = 8.200e-8
Identity = 39/68 (57.35%), Postives = 43/68 (63.24%), Query Frame = 0 
Query:   96 PTGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESES 164
            PTGKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ EIK IES++
Sbjct:    5 PTGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVVGVAGATAVVVRTFDQTEIKYIESKA 72
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BLAST of NO06G03090 vs. NCBI_GenBank
Match: EWM19937.1 (hypothetical protein Naga_102907g1 [Nannochloropsis gaditana])

HSP 1 Score: 65.9 bits (159), Expect = 1.800e-7
Identity = 38/68 (55.88%), Postives = 43/68 (63.24%), Query Frame = 0 
Query:   96 PTGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESES 164
            PTGKGRVLRG FSS   TG  TS+  E GK     +Q IG V  VAG+TA  V   DQ EIK IES++
Sbjct:    5 PTGKGRVLRGGFSSTAHTGPGTSNGEELGKKWATFFQGIGAVVGVAGATAVVVRTFDQTEIKYIESKA 72
[Close]
BLAST of NO06G03090 vs. NCBI_GenBank
Match: EWM20146.1 (hypothetical protein Naga_101508g1 [Nannochloropsis gaditana])

HSP 1 Score: 64.3 bits (155), Expect = 5.300e-7
Identity = 38/68 (55.88%), Postives = 42/68 (61.76%), Query Frame = 0 
Query:   96 PTGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESES 164
            PTGKGRVLRG F S   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ EIK IES++
Sbjct:    5 PTGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYIESKA 72
The following BLAST results are available for this feature:
BLAST of NO06G03090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM19988.18.200e-857.35hypothetical protein Naga_102432g1 [Nannochloropsi... [more]
EWM19937.11.800e-755.88hypothetical protein Naga_102907g1 [Nannochloropsi... [more]
EWM20146.15.300e-755.88hypothetical protein Naga_101508g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL092nonsL092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03090.1NO06G03090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03090.1NO06G03090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03090 ID=NO06G03090|Name=NO06G03090|organism=Nannochloropsis oceanica|type=gene|length=651bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGTAACGGGTGGGGGTGGGGGGAGGGACGTTTG
GTGCACGCGACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTTATCTGC
ACGTCTATCTCGTTTGAGGTGCAATCTGTGTTGTGCGGACAAGGGCCGGT
GCCAAGGTGCTCATGCACGAGCGCATTCATACACGCCGACAGGGAAGGGA
CGCGTACTGCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGCGCGCAC
GAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAGCCCA
TTGGTGTGGTGGCCGCGGTTGCGGGCTCTACCGCTTACGGCGTCCACCAT
CTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGGT
TGCTCGTATCCAGGGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGAGA
AGGCGGCGACGGAGGTTGCTCGTATTGAGGGCGACTGTGCGCGAATCCAG
GGTGAGAGCAAGTCGGAGATTGCTCGTATCGAAAGCGACCGAAAGTTGTG
A
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protein sequence of NO06G03090.1

>NO06G03090.1-protein ID=NO06G03090.1-protein|Name=NO06G03090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGNGWGWGEGRL
VHATAYCPRDVGSFLSARLSRLRCNLCCADKGRCQGAHARAHSYTPTGKG
RVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHH
LDQMEIKRIESESKSEVARIQGESKSEVARIQEKAATEVARIEGDCARIQ
GESKSEIARIESDRKL*
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Synonyms
Publications