NO06G03040, NO06G03040 (gene) Nannochloropsis oceanica

Overview
NameNO06G03040
Unique NameNO06G03040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length950
Alignment locationchr6:869665..870614 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:869665..870614 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO06G03040 vs. NCBI_GenBank
Match: EWM20145.1 (hypothetical protein Naga_101508g3 [Nannochloropsis gaditana])

HSP 1 Score: 110.5 bits (275), Expect = 5.200e-21
Identity = 95/173 (54.91%), Postives = 111/173 (64.16%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVYHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 174
            ML     KAGAM  RG      GKGRVLRG F S   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ EIK IES++          XXXXXXXXXXXXXXXXXXXXX   +SE+FWKAEVER+K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:   37 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYIESKA----AAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEE 205          
BLAST of NO06G03040 vs. NCBI_GenBank
Match: EWM20057.1 (hypothetical protein Naga_102002g2 [Nannochloropsis gaditana])

HSP 1 Score: 105.9 bits (263), Expect = 1.300e-19
Identity = 77/178 (43.26%), Postives = 92/178 (51.69%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVYHLDQ----MEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 175
            ML     KAGAM  RG      GKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ     EIK ++S++                                R +SE+FWKAEVER+K ++QLA T+DYEPYQAA+   R K RGG   SEE E++
Sbjct:   19 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKA----------------------AAEIARVEDKRAMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKK-RGGTSGSEEKEEE 173          
BLAST of NO06G03040 vs. NCBI_GenBank
Match: EWM20009.1 (hypothetical protein Naga_102330g1 [Nannochloropsis gaditana])

HSP 1 Score: 102.1 bits (253), Expect = 1.900e-18
Identity = 101/180 (56.11%), Postives = 117/180 (65.00%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVYHLDQ----MEIKRIESES---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 174
            ML     KAGAM  RG      GKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ     EIK ++S +    XXXXXXXXXXXXXXXXX  XXXXXXXXXXX   +SE+FWKAEVER K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:   19 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSRAAAEIXXXXXXXXXXXXXXXXXEDXXXXXXXXXXXXXXMSEVFWKAEVERIKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEE 198          
BLAST of NO06G03040 vs. NCBI_GenBank
Match: EWM20146.1 (hypothetical protein Naga_101508g1 [Nannochloropsis gaditana])

HSP 1 Score: 102.1 bits (253), Expect = 1.900e-18
Identity = 86/152 (56.58%), Postives = 103/152 (67.76%), Query Frame = 0
Query:   22 SGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVYHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 174
            +GKGRVLRG F S   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ EIK IES++          XXXXXXXXXXXXXXXXXXXXX   +SE+FWKAEVER+K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:    6 TGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYIESKA----AAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEE 153          
BLAST of NO06G03040 vs. NCBI_GenBank
Match: EWM20060.1 (hypothetical protein Naga_101993g1 [Nannochloropsis gaditana])

HSP 1 Score: 96.3 bits (238), Expect = 1.000e-16
Identity = 107/185 (57.84%), Postives = 117/185 (63.24%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVYHLDQ----MEIKRI-------ESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 175
            ML     KAGAM  RG      GKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ     EIK I           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     E+FWKAEVER+K ++QLA T+DYEPYQAA+   R KTRGG   SEE E++
Sbjct:   79 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMFWKAEVERFKREVQLAFTQDYEPYQAALVDKR-KTRGGTSGSEEKEEE 262          
BLAST of NO06G03040 vs. NCBI_GenBank
Match: EWM20119.1 (hypothetical protein Naga_101718g2 [Nannochloropsis gaditana])

HSP 1 Score: 90.9 bits (224), Expect = 4.300e-15
Identity = 108/206 (52.43%), Postives = 121/206 (58.74%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVYHLDQ----MEIKRIESES----------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 175
            ML     KAGAM  RG      GKGRVLRG F S   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ     EIK IES++                            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +SE+FWKAEVER+K ++QLA T+DYEPYQAA+   R K RGG   SEE E++
Sbjct:   82 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYIESKAAAEIXXXXXXXXXXXXXXXXXEDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKK-RGGISGSEEKEEE 286          
BLAST of NO06G03040 vs. NCBI_GenBank
Match: EWM20082.1 (hypothetical protein Naga_101888g1 [Nannochloropsis gaditana])

HSP 1 Score: 90.1 bits (222), Expect = 7.300e-15
Identity = 100/198 (50.51%), Postives = 122/198 (61.62%), Query Frame = 0
Query:    2 LWSS-ATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVYHLDQ----MEIKRIESES---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 174
            LW +  T+    +W  +   R  KGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ     EIK ++S++                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R +SE+FWKAEVER+K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:   43 LWQARGTRFATNLWSSM--RRGRKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEE 238          
BLAST of NO06G03040 vs. NCBI_GenBank
Match: EWM20114.1 (hypothetical protein Naga_101734g1 [Nannochloropsis gaditana])

HSP 1 Score: 84.0 bits (206), Expect = 5.200e-13
Identity = 68/174 (39.08%), Postives = 79/174 (45.40%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVYHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 175
            ML     KAGAM  RG      GKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ E                                          ++     AEVER+K ++QLA T+DYEPYQAA+   R K RGG   SEE E++
Sbjct:   83 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTE------------------------------------------MAPEIKYAEVERFKREVQLAFTQDYEPYQAALVDKRKK-RGGTSGSEEKEEE 213          
BLAST of NO06G03040 vs. NCBI_GenBank
Match: EWM20066.1 (hypothetical protein Naga_101980g1 [Nannochloropsis gaditana])

HSP 1 Score: 83.2 bits (204), Expect = 8.900e-13
Identity = 88/173 (50.87%), Postives = 105/173 (60.69%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVYHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 174
            ML     KAGAM  RG      GKGRVLRG FSS   TG  TS+  E GK     +Q IG V  VAG+TA  V   DQ EIK ++S++     XXXXXXXXXXXXXXXXXXXXXXXXXX               +K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:  100 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSNGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKA----AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEE 268          
BLAST of NO06G03040 vs. NCBI_GenBank
Match: EWM19993.1 (hypothetical protein Naga_102410g1 [Nannochloropsis gaditana])

HSP 1 Score: 82.4 bits (202), Expect = 1.500e-12
Identity = 91/174 (52.30%), Postives = 106/174 (60.92%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVYHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 175
            ML     KAGAM  RG      GKGRVLRG FSS   TG  TS+  E GK     +Q IG V  VAG+TA  V   DQ EIK ++S++     XXXXXXXXXXXXXXXXXXXXXXXXXX               +K ++QLA+T+DYEPYQAA+   R K RGG   SEE E++
Sbjct:   19 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGPFSSTAHTGPGTSNGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKA----AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKREVQLAYTQDYEPYQAALVDKRKK-RGGTSGSEEKEEE 187          
The following BLAST results are available for this feature:
BLAST of NO06G03040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
EWM20145.15.200e-2154.91hypothetical protein Naga_101508g3 [Nannochloropsi... [more]
EWM20057.11.300e-1943.26hypothetical protein Naga_102002g2 [Nannochloropsi... [more]
EWM20009.11.900e-1856.11hypothetical protein Naga_102330g1 [Nannochloropsi... [more]
EWM20146.11.900e-1856.58hypothetical protein Naga_101508g1 [Nannochloropsi... [more]
EWM20060.11.000e-1657.84hypothetical protein Naga_101993g1 [Nannochloropsi... [more]
EWM20119.14.300e-1552.43hypothetical protein Naga_101718g2 [Nannochloropsi... [more]
EWM20082.17.300e-1550.51hypothetical protein Naga_101888g1 [Nannochloropsi... [more]
EWM20114.15.200e-1339.08hypothetical protein Naga_101734g1 [Nannochloropsi... [more]
EWM20066.18.900e-1350.87hypothetical protein Naga_101980g1 [Nannochloropsi... [more]
EWM19993.11.500e-1252.30hypothetical protein Naga_102410g1 [Nannochloropsi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL092nonsL092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006145NSK006145Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03040.1NO06G03040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03040.1NO06G03040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03040 ID=NO06G03040|Name=NO06G03040|organism=Nannochloropsis oceanica|type=gene|length=950bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGgtaaggtggcatattgtaatgcattttggaagg
agggcttggtggctattggtaaggggtgggggtggggggagggacgtttg
gtgcacgcgaccgcatactgcccgagggatgttggttcgtttttatctgc
acgtctatctcgtttgaggtgcaatctgtgttgtgcggacaagggccggt
gccaaggtgctcatgcacgagcacattcatacacgccgacagGGAAGGGA
CGCGTACTGCGAGGGGCATTCTCCTCGGCTACCGACACGGGGGCGCGCAC
GAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAGCCCA
TTGGTGTGGTGGCTGCGGTTGCGGGCTCTACCGCTTACGGCGTCTACCAT
CTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGGT
TGCTCGTATCCAGGGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGAGA
AGGCGGCGACGGAGGTTGCTCGTATCGAAAGCGACCGAAAGTTGTCAGAG
CTTTTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGACCTCCAACTTGC
GCACACGGAAGACTATGAGCCCTATCAGGCGGCAGTTTCGAAGACAAGAA
ATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATGAGAAGAAGGGC
TAGCTGTTGGTAGCCTATGTAGCTTAATAGGAAGATGTAAAATACACGTT
CAAAGCAAAGACATGTAGAGTGGCTGGGGTTGTAAAGGAGAGATGGGGGT
AGTAGGGGTTGGTACTCATACTCCACCAATGCAATAACGAGGGCTCCCAA
AAACATGTACCCAGCGAGCTCTTCTTTTCTCCCTTCTGAGTTGATGTGCG
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protein sequence of NO06G03040.1

>NO06G03040.1-protein ID=NO06G03040.1-protein|Name=NO06G03040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGK
PLKGDYQPIGVVAAVAGSTAYGVYHLDQMEIKRIESESKSEVARIQGESK
SEVARIQEKAATEVARIESDRKLSELFWKAEVERYKHDLQLAHTEDYEPY
QAAVSKTRNKTRGGNGVSEEDEKKG*
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Synonyms
Publications