NO06G02990, NO06G02990 (gene) Nannochloropsis oceanica

Overview
NameNO06G02990
Unique NameNO06G02990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1373
Alignment locationchr6:853901..855273 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:853901..855273 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015694mercury ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0015097mercury ion transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR004891Mercury-R_MerC
Homology
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BLAST of NO06G02990 vs. NCBI_GenBank
Match: PFH37749.1 (hypothetical protein BESB_000910 [Besnoitia besnoiti])

HSP 1 Score: 68.9 bits (167), Expect = 3.200e-8
Identity = 47/134 (35.07%), Postives = 71/134 (52.99%), Query Frame = 0 
Query:  186 LATFTMVASVLCAIDCTVFPVLLTVLPAAEWLGGVD-----LHALSTNVALYLVLPIGSTTTLANWLMHRNLTLAAMSVGGLSLILMS---NYAGLTETLGWM-QDSRMYNTVGCGLLLGSSWLAHH--HEKDS 309
            L+ ++  A+VLCAIDCTV P L  +LP    LG  +     LH  S   ALY+VLP+G    + N+L HR   L    + GL+++ ++   +   L   L W+  D  +   VG  LL+ +++L+H   H  DS
Sbjct:   16 LSDWSSFAAVLCAIDCTVLPALAALLPVVGLLGDSEGAHDHLHFYSHLAALYVVLPLGFVALVLNYLQHRRTALLVSGLVGLAIVFVTHCHDSIPLPHWLHWIAHDHALIGAVGSALLISTNYLSHKAIHGMDS 149
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BLAST of NO06G02990 vs. NCBI_GenBank
Match: XP_005759925.1 (hypothetical protein EMIHUDRAFT_218452 [Emiliania huxleyi CCMP1516] >EOD07496.1 hypothetical protein EMIHUDRAFT_218452 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 68.2 bits (165), Expect = 5.500e-8
Identity = 51/143 (35.66%), Postives = 69/143 (48.25%), Query Frame = 0 
Query:  183 RELLATFTMVASVLCAIDCTVFPVLLTVLP--AAEWLGGVD--LHALSTNVALYLVLPIGSTTTLANWLMHRNLTLAAMSVGGLSLILMSN------YAGLTETLGWMQ----DSRMYNTVGCGLLLGSSWLAHHHEKDSGHH 312
            R  L   ++ AS+ CA+DCTVFPVLL  LP   A   GG    LH  S   AL+ V P+G     ANW  H+   +A   + G++LI+++N        GL+      Q       + N +GCG+LL S   AH      G H
Sbjct:   54 RTQLNRVSLFASLACAVDCTVFPVLLAALPLIGAISTGGATAWLHKASHAAALWFVGPVGGLAVAANWFQHKRAFVALWGLSGIALIILANVHLPHMILGLSMPHAIAQFLHTHHSLLNVLGCGVLLSSQRHAHSLTCCGGGH 196
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BLAST of NO06G02990 vs. NCBI_GenBank
Match: XP_003882712.1 (conserved hypothetical protein [Neospora caninum Liverpool] >CBZ52680.1 conserved hypothetical protein [Neospora caninum Liverpool])

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-7
Identity = 47/151 (31.13%), Postives = 74/151 (49.01%), Query Frame = 0 
Query:  186 LATFTMVASVLCAIDCTVFPVLLTVLPAAEWLGGVD-----LHALSTNVALYLVLPIGSTTTLANWLMHRNLTLAAMSVGGLSLILMSNYAGLTETLGWM----QDSRMYNTVGCGLLLGSSWLAHH--HEKDSGHHGGEKGGTGKGKKRC 326
            L+ ++  A+VLCAIDCTV P L  VLP   ++G  D     +H  S   A Y+VLP+G  T + N+L HR   L    + GLS++ +++         W+     D  +   +G   L+ S++ +H   H  D+    G +    + K RC
Sbjct:   23 LSDWSSFAAVLCAIDCTVLPALAAVLPVLGFIGDTDGAHEHIHYYSDMAAFYVVLPLGFITLMTNYLQHRRTLLLLWGLTGLSIVFVAHSHHSIPLPHWLHDIVHDHAVVGVLGSAALISSNYFSHRAIHSHDT---PGSRATCCEMKGRC 170
[Close]
BLAST of NO06G02990 vs. NCBI_GenBank
Match: CEL66657.1 (TPA: hypothetical protein BN1204_024680 [Neospora caninum Liverpool])

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-7
Identity = 47/151 (31.13%), Postives = 74/151 (49.01%), Query Frame = 0 
Query:  186 LATFTMVASVLCAIDCTVFPVLLTVLPAAEWLGGVD-----LHALSTNVALYLVLPIGSTTTLANWLMHRNLTLAAMSVGGLSLILMSNYAGLTETLGWM----QDSRMYNTVGCGLLLGSSWLAHH--HEKDSGHHGGEKGGTGKGKKRC 326
            L+ ++  A+VLCAIDCTV P L  VLP   ++G  D     +H  S   A Y+VLP+G  T + N+L HR   L    + GLS++ +++         W+     D  +   +G   L+ S++ +H   H  D+    G +    + K RC
Sbjct:   16 LSDWSSFAAVLCAIDCTVLPALAAVLPVLGFIGDTDGAHEHIHYYSDMAAFYVVLPLGFITLMTNYLQHRRTLLLLWGLTGLSIVFVAHSHHSIPLPHWLHDIVHDHAVVGVLGSAALISSNYFSHRAIHSHDT---PGSRATCCEMKGRC 163
The following BLAST results are available for this feature:
BLAST of NO06G02990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
PFH37749.13.200e-835.07hypothetical protein BESB_000910 [Besnoitia besnoi... [more]
XP_005759925.15.500e-835.66hypothetical protein EMIHUDRAFT_218452 [Emiliania ... [more]
XP_003882712.11.600e-731.13conserved hypothetical protein [Neospora caninum L... [more]
CEL66657.11.600e-731.13TPA: hypothetical protein BN1204_024680 [Neospora ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02990.1NO06G02990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597544gene_6631Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02990.1NO06G02990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02990 ID=NO06G02990|Name=NO06G02990|organism=Nannochloropsis oceanica|type=gene|length=1373bp
CCGCGCTCTACACGTCACAATCACGAGAAGAACCATGCTGCCCGCATCTT
CCCGGGCCGGTCTGAGACTTTCTGGGACACGGACAGGTAGACACAGCACC
AGGACAGTGATGACGTGCCTGTCCCTGCAAACACAGCTCGCGCTGGGGCT
GCACCACCACGCCATCCACCGCAATAAGTACAACCAGCCCTTCCATGCCC
TTCAAACCTTCGGCAGATTTAGTGATATAGAACGAGTGGGAAGACAGTTG
GGTTCGGTGGGAGCTTTGCGCATTGGGTTTTTACGCACCAGCGGCGGCAG
AAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAACGGCGGCAGTAGCAGCAGTAGCAGT
ATGACTTCCAACACCGGCACCGAATCAACATTGTCAAAATTAGATTCCCC
CGCGTACCACAAAAGTAAGGAGGAAGAAGCTCCGGTCACCTCTACCAAGG
CAGCAGCCGCACCAACCTTACCTCAGCACCACACTGAAGCAGACGACAAC
GGTAGCGGCGGTGGCATCGAGGGTCGCAATCGTGAGCTCCTTGCCACGTT
CACGATGGTTGCTAGCGTGCTGTGTGCGATCGACTGCACTGTCTTCCCCG
TCCTTCTTACCGTGCTCCCTGCCGCTGAATGGTTGGGAGGGGTAGATTTA
CATGCCCTTTCAACCAACGTGGCTTTGTATTTGGTCTTGCCGATAGGGAG
TACTACCACGCTGGCTAATTGGTTAATGCACCGCAACCTGACCTTGGCAG
CCATGAGTGTGGGGGGTCTGTCGTTGATTTTAATGAGTAATTATGCGGGT
TTGACGGAGACTCTTGGATGGATGCAGGATTCACGGATGTATAATACGGT
GGGATGCGGGTTGTTGCTCGGCTCGTCGTGGTTGGCACATCACCATGAGA
AGGATAGTGGTCATCATGGTGGTGAGAAAGGAGGAACAGGGAAAGGAAAG
AAGCGTTGCAACTAGAATGATGCAGGGCGGAAGAGTGTGTAAGTCTTTTG
GTGGGCCTGAGGATGGGCTCATCATTTCAAAGGAGGATGAGGTGGAAGAG
GAGGGGGGGGGAGGAGGAGGAGGAGGAGAAGGAGGATGAGGTTTTGTCAA
TAAATTGTGAGTGAGAGGAAAAGATTGTGTAGATAGATGTCTATGGTGGG
TCTTGGAGCAATTATGACGGCAAATTGATCGGCAAAAAGCCCTGAAAAGC
AGCAAGGTCATATATTATCATCATATGTCATAAAGGAGGTAGAGGGGAGC
ATGAAAAGCAGGAGTAAGAGATGTGAAGATGGACTTAAGTTGTTGGCACA
TATGTATACGTAGGATGTATATA
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protein sequence of NO06G02990.1

>NO06G02990.1-protein ID=NO06G02990.1-protein|Name=NO06G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MLPASSRAGLRLSGTRTGRHSTRTVMTCLSLQTQLALGLHHHAIHRNKYN
QPFHALQTFGRFSDIERVGRQLGSVGALRIGFLRTSGGRSSSSGSSSSSS
SSNNSSSSSSSSSNGGSSSSSSMTSNTGTESTLSKLDSPAYHKSKEEEAP
VTSTKAAAAPTLPQHHTEADDNGSGGGIEGRNRELLATFTMVASVLCAID
CTVFPVLLTVLPAAEWLGGVDLHALSTNVALYLVLPIGSTTTLANWLMHR
NLTLAAMSVGGLSLILMSNYAGLTETLGWMQDSRMYNTVGCGLLLGSSWL
AHHHEKDSGHHGGEKGGTGKGKKRCN*
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Synonyms
Publications