NO06G02850, NO06G02850 (gene) Nannochloropsis oceanica

Overview
NameNO06G02850
Unique NameNO06G02850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1432
Alignment locationchr6:818706..820137 +

Link to JBrowse

Properties
Property NameValue
DescriptionReplication factor c subunit 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:818706..820137 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR008921DNA_pol3_clamp-load_cplx_C
IPR027417P-loop_NTPase
IPR003593AAA+_ATPase
Homology
BLAST of NO06G02850 vs. NCBI_GenBank
Match: EWM26298.1 (replication factor c subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 642.1 bits (1655), Expect = 1.000e-180
Identity = 318/357 (89.08%), Postives = 340/357 (95.24%), Query Frame = 0
Query:    1 MLWVDKHRPMTLAKLDYHDDLTQRLQALSKDGEIPHLLFYGPPGAGKKTRIMALLREIYGAGVEKTRLEHKTFKTPTKRTIELTILASAYHQEINAAEAGSGDRFVVQEVIKEIAQSYNPTAALGLAGGRAFKVVVLTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGVRVPAPSHEIICTILNKISKKEACGTLPEELAMRVAQHSDRNLRRALLMLEACRVQQHPFTADQEVKVADWEEYIGKLATMLIEEQSPPRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVYWAAFYEHRVQVGSKEIFHLEAFVAKFMALYKAFVINMFGF 358
            MLWVDKHRP TLAK+DYH+DLT RL+ALS+DGE+PHLLFYGPPGAGKKTRIMALLR+++GAGVEKTRLEHKTFKTPTKRTIELTILASA+HQEINAAEAGSGDRFVVQEVIKEIAQSYNP AA+G AGGRA+KVV+LTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLG+RV APSHE IC ILNK+SKKE+CG LPE LAMR+AQ S RNLRRALLMLEACRVQQHPF+A+QEVKV DWEEYI KLA +L EEQSP RLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVV+WAAFYEHRV++GSKEIFHLEAFVAKFMALYKAFVIN FGF
Sbjct:    1 MLWVDKHRPTTLAKMDYHEDLTARLEALSEDGEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTKRTIELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGRAYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRVQQHPFSAEQEVKVPDWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTFGF 357          
BLAST of NO06G02850 vs. NCBI_GenBank
Match: CBJ27673.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 447.6 bits (1150), Expect = 3.700e-122
Identity = 226/361 (62.60%), Postives = 286/361 (79.22%), Query Frame = 0
Query:    1 MLWVDKHRPMTLAKLDYHDDLTQRLQALSKDGEIPHLLFYGPPGAGKKTRIMALLREIYGAGVEKTRLEHKTFKTPTKRTIELTILASAYHQEINAAEAGSGDRFVVQEVIKEIAQSYNPTAALGLAGGR------AFKVVVLTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGVRVPAPSHEIICTILNKISKKEACGTLPEELAMRVAQHSDRNLRRALLMLEACRVQQHPFTADQEVKVADWEEYIGKLATMLIEEQSPPRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVYWAAFYEHRVQVGSKEIFHLEAFVAKFMALYKAFVINMF 356
            MLWVDKHRP +L  LD H +LT RL A+S+DGEIPHLLFYGP G+GKKTR++ALL+ IYG G E+ RLEH++FKTP+ R +ELT +AS YH E++  +AG  DR+VVQ++IKEIAQ+ + +A++G  G          KVVVL  VDRL++QAQA LRRTME+YT++CRLIL C+S S+VIEPVRSRCLGVRVPAPS   +C++L  + +KE+  TLP  LA RVA+ S RNLRRA+LM+EACRVQQ+PF+ DQEV++ DWE YI +LA  ++ EQSP RL+ AR+ LYELLTNCIP+D+ILKTL REL+  LD +L  EV  WAAFYEHR+ +GSKEI HLEAFVAKFM++YKA++I  F
Sbjct:    1 MLWVDKHRPKSLDSLDVHPELTTRLAAMSEDGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYVVQDIIKEIAQNRSISASMGGGGSDDKKSKIGHKVVVLVGVDRLTKQAQAGLRRTMERYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPSESEVCSVLTSVCRKESL-TLPPALAARVAKVSKRNLRRAVLMIEACRVQQYPFSEDQEVQMTDWENYITQLAREVVLEQSPRRLLEAREKLYELLTNCIPADIILKTLTRELVKNLDCKLWGEVFKWAAFYEHRLHMGSKEILHLEAFVAKFMSIYKAYIIAEF 360          
BLAST of NO06G02850 vs. NCBI_GenBank
Match: XP_009032296.1 (hypothetical protein AURANDRAFT_69595 [Aureococcus anophagefferens] >EGB12635.1 hypothetical protein AURANDRAFT_69595 [Aureococcus anophagefferens])

HSP 1 Score: 442.2 bits (1136), Expect = 1.500e-120
Identity = 223/355 (62.82%), Postives = 277/355 (78.03%), Query Frame = 0
Query:    1 MLWVDKHRPMTLAKLDYHDDLTQRLQALSKDGEIPHLLFYGPPGAGKKTRIMALLREIYGAGVEKTRLEHKTFKTPTKRTIELTILASAYHQEINAAEAGSGDRFVVQEVIKEIAQSYNPTAALGLAGGRAFKVVVLTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGVRVPAPSHEIICTILNKISKKEACGTLPEELAMRVAQHSDRNLRRALLMLEACRVQQHPFTADQEVKVADWEEYIGKLATMLIEEQSPPRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVYWAAFYEHRVQVGSKEIFHLEAFVAKFMALYKAFVINMF 356
            MLWVDKHRP+ L K+ YH +L++RL  L+ DG+IPHLLFYGP GAGKKTRIMALLR +YGAG EK RLEH+ FKTPT + IE+T +AS YH EIN ++AG+ DR+VVQEVIKEIAQS   +   G  G   +KVV+L EVDRL+RQAQA LRRTMEK T++CRLILCCN+ S+VI+P+RSRCLG+RV AP+   I  +L+ ++ +E    LP  LA R+A+ S RNLRRA+L LE C+VQQ+PF A Q V + DWE+Y+  +A+ +  EQSP RL+  RD LYELL+ CIP+DVILKTL RELL  LDD++K EV+ WAAFYEHR+  G+KEIFHLEAFVAKFM LYK F++ MF
Sbjct:    1 MLWVDKHRPLELGKMSYHGELSERLATLAADGDIPHLLFYGPSGAGKKTRIMALLRALYGAGAEKQRLEHRDFKTPTNKAIEVTTVASNYHIEINPSDAGNNDRYVVQEVIKEIAQS--GSLHKGDKGRVGYKVVLLVEVDRLTRQAQAGLRRTMEKCTSSCRLILCCNNPSKVIDPLRSRCLGIRVAAPTEAEIVAVLDDVAARERL-DLPPALAARIAKASKRNLRRAILSLEECKVQQYPFDAAQAVPLPDWEQYVVAIASDIAREQSPQRLLATRDKLYELLSKCIPADVILKTLARELLKNLDDEMKAEVLKWAAFYEHRITQGNKEIFHLEAFVAKFMCLYKKFMMEMF 352          
BLAST of NO06G02850 vs. NCBI_GenBank
Match: XP_002288929.1 (replication factor C 37 KD subunit [Thalassiosira pseudonana CCMP1335] >EED94365.1 replication factor C 37 KD subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 432.2 bits (1110), Expect = 1.600e-117
Identity = 218/362 (60.22%), Postives = 281/362 (77.62%), Query Frame = 0
Query:    1 MLWVDKHRPMTLAKLDYHDDLTQRLQALSKD-GEIPHLLFYGPPGAGKKTRIMALLREIYGAGVEKTRLEHKTFKTPTKRTIELTILASAYHQEINAAEAGSGDRFVVQEVIKEIAQSYNPTAALGLAGGRAFKVVVLTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGVRVPAPSHEIICTILNKISKKEACGTLPEELAMRVAQHSDRNLRRALLMLEACRV-----QQHPFTADQEVKVADWEEYIGKLATMLIEEQSPPRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVYWAAFYEHRVQVGSKEIFHLEAFVAKFMALYKAFVINMFG 357
            MLWVDKHRP  L +L YH  LT RL++LS D G +PHLLFYGPPG+GKKTRI ALLR ++G G E+ RL+ +TF TPT RT+E+ +++S YH E++  +AG  DRFV+Q+VIKE+A S N  A +G A    +KVVVL EVD+L+RQAQAALRRTMEKY+++CRLILCCN+ S+VI+PVRSRCLG+RV APSH+ I T+L  +++KE+  TLP+ELA+ +A+ S+RNLRRALLMLE+C V            +Q +   DWE YI +LA+ +  EQSP RL++AR+ LYELL NCIP+  ILKTL+ ELLP LDD +K EVV WAAFYEHR+ +GSKEIFHLEAF+AKFM++YK ++ +MFG
Sbjct:    1 MLWVDKHRPTRLTQLTYHGTLTARLESLSADPGGLPHLLFYGPPGSGKKTRIAALLRSVFGHGSERLRLDKRTFTTPTNRTVEINMISSNYHIEMSPGDAGLNDRFVIQDVIKEMASSKN-IATVGTANNE-YKVVVLVEVDKLTRQAQAALRRTMEKYSSSCRLILCCNNPSKVIDPVRSRCLGIRVAAPSHDEIATVLKTVARKESI-TLPDELAISLARSSNRNLRRALLMLESCHVTTRDDSPKELKPNQPIPHTDWERYISQLASEITREQSPKRLIMAREKLYELLINCIPAQTILKTLVMELLPTLDDSIKGEVVTWAAFYEHRIALGSKEIFHLEAFIAKFMSIYKRYINDMFG 359          
BLAST of NO06G02850 vs. NCBI_GenBank
Match: XP_008899859.1 (hypothetical protein PPTG_07433 [Phytophthora parasitica INRA-310] >ETI54607.1 hypothetical protein F443_02615 [Phytophthora parasitica P1569] >ETM00954.1 hypothetical protein L917_02398 [Phytophthora parasitica] >ETM54129.1 hypothetical protein L914_02492 [Phytophthora parasitica] >ETN15283.1 hypothetical protein PPTG_07433 [Phytophthora parasitica INRA-310] >ETO83361.1 hypothetical protein F444_02615 [Phytophthora parasitica P1976] >ETP52395.1 hypothetical protein F442_02591 [Phytophthora parasitica P10297] >KUF80072.1 Replication factor C subunit 3 [Phytophthora nicotianae] >KUF96724.1 Replication factor C subunit 3 [Phytophthora nicotianae])

HSP 1 Score: 424.9 bits (1091), Expect = 2.500e-115
Identity = 212/359 (59.05%), Postives = 278/359 (77.44%), Query Frame = 0
Query:    1 MLWVDKHRPMTLAKLDYHDDLTQRLQALSKDGEIPHLLFYGPPGAGKKTRIMALLREIYGAGVEKTRLEHKTFKTPTKRT-IELTILASAYHQEINAAEAGSGDRFVVQEVIKEIAQSYNPTAALGLAGGRAFKVVVLTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGVRVPAPSHEIICTILNKISKKEA---CGTLPEELAMRVAQHSDRNLRRALLMLEACRVQQHPFTADQEVKVADWEEYIGKLATMLIEEQSPPRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVYWAAFYEHRVQVGSKEIFHLEAFVAKFMALYKAFVINMF 356
            MLWVDK+RP +L+ LD+H ++T+RL  LS+  ++PHLL YGP GAGKKTRIMALLR +YG G  K RLEHK+FK P + T +E+T +AS +H E+N ++ G+ DR VVQEV+KEIAQ +           R FKVV+L EVDRLS+ AQ ALRRTMEKYTA CRLILCCN+ S+VI+P+RSRCLGVRV AP+ + ICTIL  + KKE    C  L +E+A++    S+RNLRRALLMLE CRVQ +PF+ DQ++++  WEEYI  LA ++++EQSP  L+ AR+M+YEL++NC+PS+VILK L REL+ +LDD LKHE+V WA++YEHR+Q GSK+IFH EAF+AKFM LYK F++ ++
Sbjct:    1 MLWVDKYRPTSLSSLDFHPEVTKRLSNLSQSSDLPHLLVYGPSGAGKKTRIMALLRALYGDGALKVRLEHKSFKAPNRSTKVEITTVASNFHIEMNPSDVGNNDRLVVQEVLKEIAQYH----LADTNSQRPFKVVLLMEVDRLSKNAQHALRRTMEKYTATCRLILCCNNPSKVIDPLRSRCLGVRVGAPTMDDICTILQGVCKKEGLDYCAPLGKEIALK----SERNLRRALLMLETCRVQSYPFSPDQQIQLPAWEEYICSLAKVVLQEQSPAGLLKAREMIYELISNCVPSEVILKVLCRELMSRLDDDLKHELVQWASYYEHRMQRGSKDIFHFEAFLAKFMTLYKKFLLELY 351          
BLAST of NO06G02850 vs. NCBI_GenBank
Match: ETK94467.1 (hypothetical protein L915_02498 [Phytophthora parasitica] >ETL47844.1 hypothetical protein L916_02469 [Phytophthora parasitica] >ETP24441.1 hypothetical protein F441_02573 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 422.9 bits (1086), Expect = 9.700e-115
Identity = 211/359 (58.77%), Postives = 278/359 (77.44%), Query Frame = 0
Query:    1 MLWVDKHRPMTLAKLDYHDDLTQRLQALSKDGEIPHLLFYGPPGAGKKTRIMALLREIYGAGVEKTRLEHKTFKTPTKRT-IELTILASAYHQEINAAEAGSGDRFVVQEVIKEIAQSYNPTAALGLAGGRAFKVVVLTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGVRVPAPSHEIICTILNKISKKEA---CGTLPEELAMRVAQHSDRNLRRALLMLEACRVQQHPFTADQEVKVADWEEYIGKLATMLIEEQSPPRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVYWAAFYEHRVQVGSKEIFHLEAFVAKFMALYKAFVINMF 356
            MLWVDK+RP +L+ LD+H ++T+RL  LS+  ++PHLL YGP GAGKKTRIMALLR +YG G  K RLEHK+FK P + T +E+T +AS +H E+N ++ G+ DR VVQEV+KEIAQ +           R FKVV+L EVDRLS+ AQ ALRRTMEKYTA CRLILCCN+ S+VI+P+RSRCLGVRV AP+ + ICTIL  + KKE    C  L +E+A++    S+RNLRRALLMLE CRVQ +PF+ DQ++++  WEE+I  LA ++++EQSP  L+ AR+M+YEL++NC+PS+VILK L REL+ +LDD LKHE+V WA++YEHR+Q GSK+IFH EAF+AKFM LYK F++ ++
Sbjct:    1 MLWVDKYRPTSLSSLDFHPEVTKRLSNLSQSSDLPHLLVYGPSGAGKKTRIMALLRALYGDGALKVRLEHKSFKAPNRSTKVEITTVASNFHIEMNPSDVGNNDRLVVQEVLKEIAQYH----LADTNSQRPFKVVLLMEVDRLSKNAQHALRRTMEKYTATCRLILCCNNPSKVIDPLRSRCLGVRVGAPTMDDICTILQGVCKKEGLDYCAPLGKEIALK----SERNLRRALLMLETCRVQSYPFSPDQQIQLPAWEEHICSLAKVVLQEQSPAGLLKAREMIYELISNCVPSEVILKVLCRELMSRLDDDLKHELVQWASYYEHRMQRGSKDIFHFEAFLAKFMTLYKKFLLELY 351          
BLAST of NO06G02850 vs. NCBI_GenBank
Match: XP_002997106.1 (replication factor C subunit 3 [Phytophthora infestans T30-4] >EEY69694.1 replication factor C subunit 3 [Phytophthora infestans T30-4])

HSP 1 Score: 422.9 bits (1086), Expect = 9.700e-115
Identity = 211/359 (58.77%), Postives = 277/359 (77.16%), Query Frame = 0
Query:    1 MLWVDKHRPMTLAKLDYHDDLTQRLQALSKDGEIPHLLFYGPPGAGKKTRIMALLREIYGAGVEKTRLEHKTFKTPTKRT-IELTILASAYHQEINAAEAGSGDRFVVQEVIKEIAQSYNPTAALGLAGGRAFKVVVLTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGVRVPAPSHEIICTILNKISKKEA---CGTLPEELAMRVAQHSDRNLRRALLMLEACRVQQHPFTADQEVKVADWEEYIGKLATMLIEEQSPPRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVYWAAFYEHRVQVGSKEIFHLEAFVAKFMALYKAFVINMF 356
            MLWVDK+RP +L+ LD+H ++T+RL  LS+  ++PHLL YGP GAGKKTRIMALLR +YG G  K RLEHK+FK P + T +E+T +AS +H E+N ++ G+ DR VVQEV+KEIAQ +           R FKVV+L EVDRLS+ AQ ALRRTMEKYTA CRLILCCN+ S+VI+P+RSRCLGVRV AP+ + ICTIL  +  KE    C  L +E+A++    S+RNLRRALLMLE CRVQ +PF+ DQ++++  WEEYI  LA ++++EQSP  L+ AR+M+YEL++NC+PS+VILK L REL+ +LDD LKHE+V WA++YEHR+Q GSK+IFH EAF+AKFM LYK F++ ++
Sbjct:    1 MLWVDKYRPTSLSSLDFHPEVTKRLSNLSQSSDLPHLLVYGPSGAGKKTRIMALLRALYGDGALKVRLEHKSFKAPNRSTKVEITTVASNFHIEMNPSDVGNNDRLVVQEVLKEIAQYH----LADTNAHRPFKVVLLMEVDRLSKNAQHALRRTMEKYTATCRLILCCNNPSKVIDPLRSRCLGVRVGAPTTDDICTILQGVCSKEGLDYCAPLGKEIALK----SERNLRRALLMLETCRVQNYPFSPDQQIQLPAWEEYICSLAKVVLQEQSPAGLLKAREMIYELISNCVPSEVILKVLCRELMSRLDDDLKHELVQWASYYEHRMQRGSKDIFHFEAFLAKFMTLYKKFLLELY 351          
BLAST of NO06G02850 vs. NCBI_GenBank
Match: XP_003219205.1 (PREDICTED: replication factor C subunit 3 [Anolis carolinensis])

HSP 1 Score: 422.2 bits (1084), Expect = 1.600e-114
Identity = 213/350 (60.86%), Postives = 263/350 (75.14%), Query Frame = 0
Query:    2 LWVDKHRPMTLAKLDYHDDLTQRLQALSKDGEIPHLLFYGPPGAGKKTRIMALLREIYGAGVEKTRLEHKTFKTPTKRTIELTILASAYHQEINAAEAGSGDRFVVQEVIKEIAQSYNPTAALGLAGGRAFKVVVLTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGVRVPAPSHEIICTILNKISKKEACGTLPEELAMRVAQHSDRNLRRALLMLEACRVQQHPFTADQEVKVADWEEYIGKLATMLIEEQSPPRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVYWAAFYEHRVQVGSKEIFHLEAFVAKFMALYKAFV 352
            LWVDKHRP +L KLDYH +   RL+ L + G+ PHLL YGP GAGKKTRIM LLRE+YGAGVEK R+EH+    P+K+ IE++ +AS YH E+N ++AG  DR V+QE++K +AQS      L  +  R FKVV+LTEVD+L++ AQ ALRRTMEKY A CRLILCCNS S+VI P+RSRCL VRVPAPS   IC++L+ + KKE    LP+ELA R+A+ S RNLR+ALLM EACRVQQHPFT DQ++   DWE Y+ + A  ++ EQ+P RL   R  LYELLT+CIP ++I+K LL ELL   D QLK EV   AAFYEHR+Q+GSK I+HLEAFVAKFMALYK F+
Sbjct:    3 LWVDKHRPTSLGKLDYHKEQAARLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQIITAPSKKKIEISTIASNYHLEVNPSDAGISDRVVIQELLKTVAQSQQ----LETSTQRDFKVVILTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVRVPAPSIGDICSVLSNVCKKEGL-VLPQELAQRIAEKSGRNLRKALLMCEACRVQQHPFTPDQDISETDWEVYLRETANAIVSEQTPQRLFEVRGRLYELLTHCIPPEIIIKGLLCELLNNCDGQLKGEVAQMAAFYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347          
BLAST of NO06G02850 vs. NCBI_GenBank
Match: XP_006879648.1 (PREDICTED: replication factor C subunit 3 [Elephantulus edwardii])

HSP 1 Score: 421.0 bits (1081), Expect = 3.700e-114
Identity = 212/350 (60.57%), Postives = 268/350 (76.57%), Query Frame = 0
Query:    2 LWVDKHRPMTLAKLDYHDDLTQRLQALSKDGEIPHLLFYGPPGAGKKTRIMALLREIYGAGVEKTRLEHKTFKTPTKRTIELTILASAYHQEINAAEAGSGDRFVVQEVIKEIAQSYNPTAALGLAGGRAFKVVVLTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGVRVPAPSHEIICTILNKISKKEACGTLPEELAMRVAQHSDRNLRRALLMLEACRVQQHPFTADQEVKVADWEEYIGKLATMLIEEQSPPRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVYWAAFYEHRVQVGSKEIFHLEAFVAKFMALYKAFV 352
            LWVDK+RP +L++LD+H +   +L+ L + G+ PHLL YGP GAGKKTRIM +LRE+YGAGVEK R+EH+T  TP+K+ IE++ +AS YH E+N ++AG+ DR V+QE++K +AQS      L     R FKVV+LTEVD+L++ AQ ALRRTMEKY + CRLILCCNS S+VI P+RSRCL VRVPAPS E IC +L+ + KKE   TLP  LA R+A+ S RNLRRALLM EACRVQQ+PFTADQE+  ADWE Y+ + A  ++ +QSPPRL+  R  LYELLT+CIP ++I+K LL ELL   D QLK EV   AA YEHR+Q+GSK ++HLEAFVAKFMALYK F+
Sbjct:    3 LWVDKYRPCSLSRLDFHREQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGAGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ----LETGSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRCLAVRVPAPSTEDICQVLSTVCKKEGL-TLPAPLAQRLAEKSGRNLRRALLMCEACRVQQYPFTADQEIPEADWEVYLRETAHAIVSQQSPPRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKAEVAQAAASYEHRLQLGSKAVYHLEAFVAKFMALYKKFM 347          
BLAST of NO06G02850 vs. NCBI_GenBank
Match: XP_007889461.1 (PREDICTED: replication factor C subunit 3 [Callorhinchus milii])

HSP 1 Score: 420.2 bits (1079), Expect = 6.300e-114
Identity = 209/350 (59.71%), Postives = 269/350 (76.86%), Query Frame = 0
Query:    2 LWVDKHRPMTLAKLDYHDDLTQRLQALSKDGEIPHLLFYGPPGAGKKTRIMALLREIYGAGVEKTRLEHKTFKTPTKRTIELTILASAYHQEINAAEAGSGDRFVVQEVIKEIAQSYNPTAALGLAGGRAFKVVVLTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGVRVPAPSHEIICTILNKISKKEACGTLPEELAMRVAQHSDRNLRRALLMLEACRVQQHPFTADQEVKVADWEEYIGKLATMLIEEQSPPRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVYWAAFYEHRVQVGSKEIFHLEAFVAKFMALYKAFV 352
            LWVDK+RP  L KLDYH D   +L+ L + G+ PHLL YGP G+GKKTRIM LLRE+YGAG+EK R+EH++  TP+K+ +E++ +AS YH E+NA++AG+ DR V+QE+IK +AQS      L  +  R FKVVVLTEVDRL++ AQ ALRRTMEKY + CRLILCCNS S+VI P+RSRCL VRVPAPS E IC +L+ + KKE C  LP+ELA ++A+ S+RNLR+ALLM EACRVQQ+PF+ DQ++   DWE Y+ + A  ++ +Q+P RL+  R  LYELLT+CIP ++I+K LL ELL   D QLK EV   AA+YEHR+Q+GSK I+HLEAFVAKFMA+YK F+
Sbjct:    3 LWVDKYRPTALGKLDYHKDQAGQLRNLVQCGDFPHLLVYGPSGSGKKTRIMCLLRELYGAGIEKLRIEHQSITTPSKKKLEISTIASNYHLEVNASDAGNNDRVVIQELIKTVAQSQQ----LETSTQRDFKVVVLTEVDRLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVISPIRSRCLAVRVPAPSIEEICHVLSGVCKKE-CLILPQELARKIAEQSNRNLRKALLMCEACRVQQYPFSVDQDIPETDWEVYLRETANAIVNQQTPQRLLEVRARLYELLTHCIPPEIIMKGLLSELLNNCDGQLKGEVSQMAAYYEHRLQLGSKAIYHLEAFVAKFMAIYKQFM 347          
The following BLAST results are available for this feature:
BLAST of NO06G02850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26298.11.000e-18089.08replication factor c subunit 3 [Nannochloropsis ga... [more]
CBJ27673.13.700e-12262.60conserved unknown protein [Ectocarpus siliculosus][more]
XP_009032296.11.500e-12062.82hypothetical protein AURANDRAFT_69595 [Aureococcus... [more]
XP_002288929.11.600e-11760.22replication factor C 37 KD subunit [Thalassiosira ... [more]
XP_008899859.12.500e-11559.05hypothetical protein PPTG_07433 [Phytophthora para... [more]
ETK94467.19.700e-11558.77hypothetical protein L915_02498 [Phytophthora para... [more]
XP_002997106.19.700e-11558.77replication factor C subunit 3 [Phytophthora infes... [more]
XP_003219205.11.600e-11460.86PREDICTED: replication factor C subunit 3 [Anolis ... [more]
XP_006879648.13.700e-11460.57PREDICTED: replication factor C subunit 3 [Elephan... [more]
XP_007889461.16.300e-11459.71PREDICTED: replication factor C subunit 3 [Callorh... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000169NSK000169Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02850.1NO06G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597485gene_6614Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100093g7gene4225Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02850.1NO06G02850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02850 ID=NO06G02850|Name=NO06G02850|organism=Nannochloropsis oceanica|type=gene|length=1432bp
ACAGCCCGCTAGCACTCCCTCCTACGCGTTCCCCATCACAGCTGCATCCT
CACTATGTTGTGGGTGGACAAGCACCGGCCGATGACCCTGGCCAAACTGG
ATTACCACGATGACCTGACCCAGCGCTTGCAAGCCCTCTCCAAGGACGGT
GAAATCCCCCACCTGCTCTTCTACGGCCCCCCCGGTGCCGGCAAAAAGAC
ACGCATCATGGCTTTGCTTCGGGAGATTTACGGCGCCGGCGTGGAGAAGA
CCAGGCTGGAGCACAAGACGTTCAAGACCCCCACCAAACGCACGATTGAG
CTAACCATTCTGGCCTCGGCATATCACCAAGAGATCAATGCCGCCGAAGC
AGGGTCCGGTGACCGGTTTGTGGTCCAAGAAGTGATCAAGGAGATCGCCC
AGTCCTATAACCCCACGGCGGCCTTAGGATTGGCAGGAGGACGAGCTTTC
AAGGTGGTTGTGTTGACGGAGGTGGACAGGCTGAGTCGTCAGGCCCAAGC
GGCGTTGCGTCGGACAATGGAAAAATACACAGCAGCGTGCCGCTTGATAT
TGTGCTGCAACAGCGCCTCGCGTGTCATCGAACCTGTGCGTTCTCGTTGC
CTGGGCGTTCGGGTACCGGCGCCTTCCCATGAGATTATCTGCACGATTCT
GAACAAAATCTCCAAAAAAGAGGCTTGTGGAACCCTTCCCGAAGAACTTG
CCATGCGCGTTGCTCAGCACTCAGACCGCAACCTCCGCCGGGCCCTTTTG
ATGCTTGAGGCGTGCCGGGTGCAACAACATCCGTTCACGGCTGACCAGGA
GGTAAAGGTGGCCGATTGGGAAGAATACATTGGCAAGCTTGCTACGATGC
TGATCGAGGAGCAGAGCCCCCCCCGGTTGGTCTTGGCGAGGGATATGCTA
TACGAGTTGCTGACGAATTGCATCCCATCGGATGTGATTTTGAAGACGTT
GTTGAGGGAGTTGTTGCCGAAGCTGGATGATCAGTTGAAGCATGAGGTGG
TGTATTGGGCAGCGTTCTATGAGCACCGGGTTCAGGTGGGGAGCAAGGAG
ATTTTCCACTTGGAAGCCTTCGTGGCCAAGTTTATGGCCCTGTATAAGGC
CTTTGTCATCAACATGTTCGGGTTTTAGGGAGGGGGAGGGAGAGAGGAGA
GAGGGGAAGGGACCGAGGGAAGGGAGGCCTGTACAAGGTTCAGGGGATCG
GAATGTCTGGGCTGCAGATGTTTGCCTTTTCGGGGAATTGATGCGAGTTA
TCCAGTGATGGGGAGAAGACAAATGGAAGGGTAGGGAGAAAGAGGGAAAA
GGGGAAGTCAAAACAAAGTAAATAGTAAGACAAGAGGCTGCTTGAGGTTA
GGTAGAGGAACAAACGAAAGGCAAGAAGGAAAGAACCAAGGCAGTAAGAA
CATGACACGAAACAAATCAGCGCATTCAATGC
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protein sequence of NO06G02850.1

>NO06G02850.1-protein ID=NO06G02850.1-protein|Name=NO06G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MLWVDKHRPMTLAKLDYHDDLTQRLQALSKDGEIPHLLFYGPPGAGKKTR
IMALLREIYGAGVEKTRLEHKTFKTPTKRTIELTILASAYHQEINAAEAG
SGDRFVVQEVIKEIAQSYNPTAALGLAGGRAFKVVVLTEVDRLSRQAQAA
LRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGVRVPAPSHEIICTILN
KISKKEACGTLPEELAMRVAQHSDRNLRRALLMLEACRVQQHPFTADQEV
KVADWEEYIGKLATMLIEEQSPPRLVLARDMLYELLTNCIPSDVILKTLL
RELLPKLDDQLKHEVVYWAAFYEHRVQVGSKEIFHLEAFVAKFMALYKAF
VINMFGF*
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Synonyms
Publications