NO06G02640, NO06G02640 (gene) Nannochloropsis oceanica

Overview
NameNO06G02640
Unique NameNO06G02640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1108
Alignment locationchr6:745871..746978 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:745871..746978 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO06G02640 vs. NCBI_GenBank
Match: EWM26291.1 (hypothetical protein Naga_100073g6 [Nannochloropsis gaditana])

HSP 1 Score: 243.8 bits (621), Expect = 5.600e-61
Identity = 129/218 (59.17%), Postives = 162/218 (74.31%), Query Frame = 0 
Query:   30 SSSPIHTQSSQSFQLRMKLAGVEDTATSSTTTDSLPSRASFLDTIRLSRKVATGTTTFLLGSATGQLLNPALPAAQAADLTPLPAEFKTAVINMREAVFPINLRDAAKALSETPGLDELAFDDGSRRAINTELKELQAARPDLWDAETSYYGGVIRRAVNPFHVIELIPLLKIGPFTGGLGYLIAIVVQRKFPRLFGLAYFGAVASIVLPGIYLILYT 248
            S + + T++ +S  + +K AG        + ++S   ++S L  ++ + K AT     LLG+  G       P +QAADLTPLP EF+TA++ MR+A  P++LRDAAKA+SE PGLDEL +DD SRRAINTELKEL+  RPDLWDAETSYYGGVIRRAVNPFHV+ELIPLLK+GPF GG+GY +AIVVQRKFPR F LAYFGA+AS+V P +YLILYT
Sbjct:   37 SLTHLSTKTVRSVSVAVKAAG--------SGSESSSPKSSPLGPVQ-NVKRATSKAALLLGTCIGSFDTSGAPPSQAADLTPLPPEFRTAIMAMRDAAEPLSLRDAAKAVSELPGLDELLYDDASRRAINTELKELRQERPDLWDAETSYYGGVIRRAVNPFHVLELIPLLKVGPFVGGVGYFLAIVVQRKFPRFFALAYFGAIASLVAPAVYLILYT 245
[Close]
BLAST of NO06G02640 vs. NCBI_GenBank
Match: CBJ28861.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 71.2 bits (173), Expect = 4.900e-9
Identity = 57/195 (29.23%), Postives = 93/195 (47.69%), Query Frame = 0 
Query:   55 ATSSTTTDSLPSRASFLDTIRLSRKVATGTTTFLLGSATGQLLNPALPAAQAADLTPLP--AEFKTAVINMREAVFPINLRDAAKALSETPGLDE--LAFDDGSRRAINTELKELQAARPDLWDAETSYYGGVIRRAVNPFHVIELIPLLKIGPFTGGLGYLIAIVVQRKFPRLFGLAYFGAVASIVLPGIYLIL 246
            AT++  + SLP+ A+           + G    L G       N  +  A   D +     A+    V+ +++A  P  L ++   +++    DE  +  +  +  +I   L + + A  + WD+ T    G+++R ++PF+V+ L P LKI PF GG  YL    VQ+KF   F  AYFGAVA  V P + +IL
Sbjct:   97 ATAAILSSSLPAGAA---------SGSRGVRHHLDGGRGSSPANVLMVLADEGDFSSADGRADVSQLVLELKKADRPDTLLNSMVKINDVVDWDEDGVLENPFAAESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVIL 282
The following BLAST results are available for this feature:
BLAST of NO06G02640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26291.15.600e-6159.17hypothetical protein Naga_100073g6 [Nannochloropsi... [more]
CBJ28861.14.900e-929.23conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000194NSK000194Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02640.1NO06G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597409gene_6585Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100073g6gene4248Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02640.1NO06G02640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02640 ID=NO06G02640|Name=NO06G02640|organism=Nannochloropsis oceanica|type=gene|length=1108bp
ACAGGCGTCCTCTTTCTTCACTCGCTAGCCTCCTGCATACCATCATGATG
AGACCCTCCTTCCCACTAGCCCTCTCCCTTGCCCTTTTCCTTGGCGGCCC
TGACCTCCCCCGTGCATTTGTCTTTTCGTCCTCCTCCTCACCAATCCACA
CGCAATCTAGCCAATCGTTTCAGCTGAGAATGAAGCTGGCCGGCGTAGAA
GACACGGCAACGTCCTCTACCACAACCGACAGCCTCCCGAGTCGAGCCTC
CTTTCTGGACACCATCCGCCTGAGCCGCAAAGTTGCCACTGGCACTACCA
CCTTTTTACTCGGCAGTGCTACCGGTCAGCTCCTGAATCCTGCCCTTCCT
GCTGCCCAAGCCGCGGACCTGACCCCGTTGCCTGCCGAGTTCAAGACAGC
CGTCATAAACATGCGCGAGGCCGTTTTCCCCATCAACCTCCGCGATGCTG
CAAAGGCTCTGTCTGAAACCCCTGGCTTGGATGAGCTGGCGTTTGATGAC
GGGAGTCGGCGGGCAATTAACACGGAATTGAAAGAGCTGCAGGCGGCAAG
ACCAGATTTGTGGGATGCCGAGACGAGCTATTACGGAGGGGTGATCCGGC
GGGCGGTCAACCCATTCCATGTGATCGAGCTGATTCCTTTGCTGAAGgta
cgtttttggttacgggcgcaaagctatgcaccgtgactttaattgtaatt
ctaacacttttccgaccaattctccttatttttttaatgtatagATCGGA
CCTTTTACTGGAGGCCTTGGCTACTTGATTGCCATCGTCGTGCAGCGCAA
GTTTCCTCGTTTGTTCGGCCTCGCTTACTTTGGAGCCGTGGCATCCATTG
TATTACCCGGTATCTACCTCATTTTGTACACTTAGAGAGCTTTGGGCGAA
TCCGGTGATGGAATAAAAGGAGAAAGGAATGCTTATAGTGGTGAGGACTC
GAGAAAGCGGGCTGAGAGAGATCAGCACAATTACCACTGAAATTCATCAC
GCAAAAGCAAAAAAGGACTTGAAATCTATGTATAAGGTCTTCATGTTTGC
TGTCTCTTTTAGTTTCTGGTTGTGGCGGTGGTGGTCGAAGCACTCCTTGC
AATGCCCA
back to top

protein sequence of NO06G02640.1

>NO06G02640.1-protein ID=NO06G02640.1-protein|Name=NO06G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MMRPSFPLALSLALFLGGPDLPRAFVFSSSSSPIHTQSSQSFQLRMKLAG
VEDTATSSTTTDSLPSRASFLDTIRLSRKVATGTTTFLLGSATGQLLNPA
LPAAQAADLTPLPAEFKTAVINMREAVFPINLRDAAKALSETPGLDELAF
DDGSRRAINTELKELQAARPDLWDAETSYYGGVIRRAVNPFHVIELIPLL
KIGPFTGGLGYLIAIVVQRKFPRLFGLAYFGAVASIVLPGIYLILYT*
back to top
Synonyms
Publications