NO06G02570, NO06G02570 (gene) Nannochloropsis oceanica

Overview
NameNO06G02570
Unique NameNO06G02570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length759
Alignment locationchr6:720269..721027 -

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Properties
Property NameValue
DescriptionN-alpha-acetyltransferase auxiliary subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:720269..721027 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
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BLAST of NO06G02570 vs. NCBI_GenBank
Match: EWM26273.1 (n-alpha-acetyltransferase auxiliary subunit [Nannochloropsis gaditana])

HSP 1 Score: 187.6 bits (475), Expect = 1.900e-44
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0 
Query:    1 MAATLETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH 97
            MAATLE LKDR+ICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLS+LKGD LKPVIH
Sbjct:   25 MAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
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BLAST of NO06G02570 vs. NCBI_GenBank
Match: KOO30048.1 (u6 snRNA-associated sm-like protein lsm8 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 152.5 bits (384), Expect = 6.600e-34
Identity = 69/96 (71.88%), Postives = 86/96 (89.58%), Query Frame = 0 
Query:    1 MAATLETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH 97
            MAA +E+  D+++ ++TNDGRNIVGVLKGFDQTTN+IL++C+ERVFS+TAGVEQV LGLYIVRGDNIAVVGE+D+EADAAL L  +  +PLKPV+H
Sbjct:    1 MAAMIESYVDKVVQIVTNDGRNIVGVLKGFDQTTNVILEDCNERVFSSTAGVEQVALGLYIVRGDNIAVVGEIDQEADAALQLDDIMAEPLKPVVH 96
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BLAST of NO06G02570 vs. NCBI_GenBank
Match: XP_005763112.1 (hypothetical protein EMIHUDRAFT_215471 [Emiliania huxleyi CCMP1516] >XP_005774946.1 hypothetical protein EMIHUDRAFT_240187 [Emiliania huxleyi CCMP1516] >EOD10683.1 hypothetical protein EMIHUDRAFT_215471 [Emiliania huxleyi CCMP1516] >EOD22517.1 hypothetical protein EMIHUDRAFT_240187 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 149.1 bits (375), Expect = 7.300e-33
Identity = 73/101 (72.28%), Postives = 85/101 (84.16%), Query Frame = 0 
Query:    1 MAATLETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQ-----VPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH 97
            M+A LE L D+++ VITNDGRNIVG+LKGFDQTTN+IL ECHERVFSTTAGVEQ     V LGLYIVRGDNIA+VGE+DEE DA +DL+ LK +PLK V+H
Sbjct:    1 MSAMLEPLVDKVVQVITNDGRNIVGLLKGFDQTTNVILDECHERVFSTTAGVEQAAAGPVMLGLYIVRGDNIALVGEVDEEIDAEIDLAMLKAEPLKAVVH 101
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BLAST of NO06G02570 vs. NCBI_GenBank
Match: XP_006300574.1 (sm-like protein LSM8 [Capsella rubella] >EOA33472.1 hypothetical protein CARUB_v10021206mg [Capsella rubella])

HSP 1 Score: 147.9 bits (372), Expect = 1.600e-32
Identity = 71/95 (74.74%), Postives = 80/95 (84.21%), Query Frame = 0 
Query:    2 AATLETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH 97
            A  LE+L D+II VITNDGRNIVGVLKGFDQ TNIIL E HERVFST  GV+QV LGLYI+RGDNI V+GE+DEE DA+LDLS L+  PLKPV+H
Sbjct:    4 ATGLESLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQVVLGLYIIRGDNIGVIGELDEELDASLDLSKLRAQPLKPVVH 98
[Close]
BLAST of NO06G02570 vs. NCBI_GenBank
Match: KMZ59617.1 (N-alpha-acetyltransferase 38, NatC auxiliary subunit [Zostera marina])

HSP 1 Score: 146.7 bits (369), Expect = 3.600e-32
Identity = 69/95 (72.63%), Postives = 83/95 (87.37%), Query Frame = 0 
Query:    2 AATLETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH 97
            A+TLE+L D++I VITNDGRNIVG+LKGFDQ TNIIL E HERV+ST  GV+Q+ LGLYI+RGDNI+VVGE+DE+ D+ LDLST+K  PLKPVIH
Sbjct:    4 ASTLESLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVYSTREGVQQLVLGLYIIRGDNISVVGELDEDLDSNLDLSTVKAHPLKPVIH 98
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BLAST of NO06G02570 vs. NCBI_GenBank
Match: XP_018468348.1 (PREDICTED: sm-like protein LSM8 [Raphanus sativus] >XP_018468349.1 PREDICTED: sm-like protein LSM8 [Raphanus sativus] >XP_018468352.1 PREDICTED: sm-like protein LSM8 [Raphanus sativus])

HSP 1 Score: 146.7 bits (369), Expect = 3.600e-32
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 0 
Query:    1 MAAT--LETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH 97
            MAAT  LE+L D+II VITNDGRNIVGVL+GFDQ TNIIL E HERVFST  GV+Q+ LGLYI+RGDNI V+GE+DEE DA+LDLS L+  PLKPV+H
Sbjct:    1 MAATTGLESLVDQIISVITNDGRNIVGVLRGFDQATNIILDESHERVFSTKVGVQQLVLGLYIIRGDNIGVIGELDEELDASLDLSKLRAHPLKPVVH 98
[Close]
BLAST of NO06G02570 vs. NCBI_GenBank
Match: NP_176747.1 (Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] >NP_001031238.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] >Q8VYI0.1 RecName: Full=Sm-like protein LSM8; Short=AtLSM8; AltName: Full=U6 snRNA-associated Sm-like protein LSM8 >AAL50104.1 At1g65700/F1E22_3 [Arabidopsis thaliana] >AAM16215.1 At1g65700/F1E22_3 [Arabidopsis thaliana] >AAM64576.1 small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] >AEE34413.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] >AEE34414.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] >OAP14700.1 LSM8 [Arabidopsis thaliana])

HSP 1 Score: 146.0 bits (367), Expect = 6.200e-32
Identity = 73/98 (74.49%), Postives = 81/98 (82.65%), Query Frame = 0 
Query:    1 MAAT--LETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH 97
            MAAT  LETL D+II VITNDGRNIVGVLKGFDQ TNIIL E HERVFST  GV+Q  LGLYI+RGDNI V+GE+DEE DA+LD S L+  PLKPV+H
Sbjct:    1 MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98
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BLAST of NO06G02570 vs. NCBI_GenBank
Match: EYU25647.1 (hypothetical protein MIMGU_mgv1a016315mg [Erythranthe guttata])

HSP 1 Score: 146.0 bits (367), Expect = 6.200e-32
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 0 
Query:    3 ATLETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH 97
            A LE L D+II VITNDGRNIVGVLKGFDQ TNIIL E HERV+ST  GV+Q+ LGLYI+RGDNI++VGE+DEE DA+LDLS L+  PLKPVIH
Sbjct:   33 AGLENLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDASLDLSALRAHPLKPVIH 126
[Close]
BLAST of NO06G02570 vs. NCBI_GenBank
Match: XP_012851425.1 (PREDICTED: sm-like protein LSM8 [Erythranthe guttata])

HSP 1 Score: 146.0 bits (367), Expect = 6.200e-32
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 0 
Query:    3 ATLETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH 97
            A LE L D+II VITNDGRNIVGVLKGFDQ TNIIL E HERV+ST  GV+Q+ LGLYI+RGDNI++VGE+DEE DA+LDLS L+  PLKPVIH
Sbjct:    5 AGLENLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDASLDLSALRAHPLKPVIH 98
[Close]
BLAST of NO06G02570 vs. NCBI_GenBank
Match: XP_006391538.1 (sm-like protein LSM8 [Eutrema salsugineum] >XP_024009560.1 sm-like protein LSM8 [Eutrema salsugineum] >ESQ28823.1 hypothetical protein EUTSA_v10019364mg [Eutrema salsugineum] >ESQ28824.1 hypothetical protein EUTSA_v10019364mg [Eutrema salsugineum])

HSP 1 Score: 144.8 bits (364), Expect = 1.400e-31
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 0 
Query:    1 MAAT--LETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH 97
            MAAT  LE+L D++I VITNDGRNIVGVLKGFDQ TNIIL E HERVFST  GV+Q+ LGLYI+RGDNI V+GE+DEE DA+LD S L+  PLKPV+H
Sbjct:    1 MAATTGLESLVDQMISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQLVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98
The following BLAST results are available for this feature:
BLAST of NO06G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26273.11.900e-4495.83n-alpha-acetyltransferase auxiliary subunit [Nanno... [more]
KOO30048.16.600e-3471.88u6 snRNA-associated sm-like protein lsm8 [Chrysoch... [more]
XP_005763112.17.300e-3372.28hypothetical protein EMIHUDRAFT_215471 [Emiliania ... [more]
XP_006300574.11.600e-3274.74sm-like protein LSM8 [Capsella rubella] >EOA33472.... [more]
KMZ59617.13.600e-3272.63N-alpha-acetyltransferase 38, NatC auxiliary subun... [more]
XP_018468348.13.600e-3273.47PREDICTED: sm-like protein LSM8 [Raphanus sativus]... [more]
NP_176747.16.200e-3274.49Small nuclear ribonucleoprotein family protein [Ar... [more]
EYU25647.16.200e-3274.47hypothetical protein MIMGU_mgv1a016315mg [Erythran... [more]
XP_012851425.16.200e-3274.47PREDICTED: sm-like protein LSM8 [Erythranthe gutta... [more]
XP_006391538.11.400e-3172.45sm-like protein LSM8 [Eutrema salsugineum] >XP_024... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000203NSK000203Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02570.1NO06G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597383gene_6576Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100145g18gene4253Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02570.1NO06G02570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02570 ID=NO06G02570|Name=NO06G02570|organism=Nannochloropsis oceanica|type=gene|length=759bp
CAACAGCAGCCACCTATTGAGCCAGTCAGATCGCGCGCCTGTGGAGGGGA
GTGATTAAAGCAAAGACAACTCGACACAACAAGCCCAGCCGTACAGCTGC
ATCATGGCGGCCACACTCGAGACCCTGAAAGACCgtaagtccaagaattg
caaaattctcaataaagccactatccgaccattcacctcgctcttcactt
ccacctcgccttaccagGCATCATCTGCGTGATTACAAACGATGGACGCA
ACATTGTCGGCGTGCTCAAGGGCTTCGACCAAACCACCAACATCATCCTG
CAAGAATGCCATGAGCGCGTCTTTTCCACCACCGCGGGCGTAGAGCAAGT
GCCCTTGGGCTTGTACATTGTGAGAGGGGACAACATTGCCGTCGTCGGCG
AGATGGACGAGGAGGCGGATGCGGCGTTGGACTTATCGACCCTCAAGGGC
GACCCACTTAAGCCCGTCATACATTAGCAACTTAGTGATTGAGAAAATCG
TGTGTATGTGTGTGTGTGTGTGTATGTGTCCATAGGTGATAGTCGGCAAA
AGCCACCTCAAATGTGTGCAGAAACTTTATGGATTGAAGCTCTTAACCAA
AAGAACCAACAATCGCAACGTAATGCGAGACTAAAAATATGTGTGCGAGG
GTGTGTTGCGTGCTATCCGTTCCTTCTTTTTCTGCCGTTCAGGACCGGCC
TCGGCCCAAACACAACACAACGAAAAAGAAAATGGACAGAAATTGGTGAT
TCTACAGTA
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protein sequence of NO06G02570.1

>NO06G02570.1-protein ID=NO06G02570.1-protein|Name=NO06G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MAATLETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTA
GVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH*
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Synonyms
Publications