NO06G02560, NO06G02560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G02560 vs. NCBI_GenBank
Match: EWM26272.1 (proliferating cell nuclear antigen [Nannochloropsis gaditana]) HSP 1 Score: 486.5 bits (1251), Expect = 5.200e-134 Identity = 241/259 (93.05%), Postives = 251/259 (96.91%), Query Frame = 0 Query: 1 MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSLNMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLTLMFEAPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRDLAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISYFLAPKIDED 260 MFEARLTEG+LLKKIIEAIKDLVQEANVDCS+ GLTMQAMDASHVSLCSLNMR GGFDH+RCDRSISLGLNL+NLGKILKCAGN+DVVTLKAEDEPDTLTLMFE+PNQERISDFELKLMDIETEHLGIPNEEYKCTISMPS EFQRI+RDLAVIGETCII+CTKEGV+FSVSGDLG GNVTVRQSSA DGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLG TVKLHMSPDVPIVVEYP+ IGSISYFLAPKIDED Sbjct: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKIDED 259
BLAST of NO06G02560 vs. NCBI_GenBank
Match: XP_002288154.1 (pcna-like protein [Thalassiosira pseudonana CCMP1335] >EED93590.1 pcna-like protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 384.4 bits (986), Expect = 2.800e-103 Identity = 184/259 (71.04%), Postives = 224/259 (86.49%), Query Frame = 0 Query: 1 MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSLNMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLTLMFEAPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRDLAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISYFLAPKIDED 260 MFEARLT+G + K++IEA+KDLVQEAN+DC+D +++QAMD SHVSL ++++RSGGFDHFRCDR ISLG N +N+GKILKCAGN+DV+TL+AEDE D+L L+FE+P Q+RI+DFELKLMDI+ E LGIP+ EYKCTI MPS EFQRIIRDL V+G+TC ISCTKEGV+FSVSGDLG GNV VRQ+SA + DE ++V I+M+EPV L FALRYL FFTKAT LGPTV L MSP+VP+VVEYP+ + G I Y+LAPKIDED Sbjct: 1 MFEARLTQGKVFKQLIEALKDLVQEANIDCTDDEISIQAMDNSHVSLVAVSLRSGGFDHFRCDRPISLGFNAANMGKILKCAGNDDVITLRAEDEGDSLALVFESPGQDRIADFELKLMDIDNEQLGIPDTEYKCTIQMPSAEFQRIIRDLQVLGDTCTISCTKEGVKFSVSGDLGSGNVLVRQNSAAEKDE-EKVMIEMDEPVELTFALRYLNFFTKATSLGPTVILSMSPEVPVVVEYPIGETGHIKYYLAPKIDED 258
BLAST of NO06G02560 vs. NCBI_GenBank
Match: CBJ25497.1 (pcna-like protein [Ectocarpus siliculosus]) HSP 1 Score: 363.6 bits (932), Expect = 5.100e-97 Identity = 171/258 (66.28%), Postives = 215/258 (83.33%), Query Frame = 0 Query: 1 MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSLNMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLTLMFEAPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRDLAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISYFLAPKIDE 259 M+EARL + +LLKKIIEA+++LV +AN+DCS++G++MQAMD+SHVSLC+L +RS GF H+RCDRS+SLGL+ ++ KILKCAGN+D VTLKAED D LT+MFE+P Q+RISDFELKLMDI++EHLGIP EY C I MPS EF RI+RDL VIG+TC I+C K+GV FSVSGD+GKGN+ VR +++VD E+D+V + MEEPVTL FALRYL F KATPLGPTV + M+PD P+VVEYP+ G + Y+LAPKIDE Sbjct: 1 MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVD-KEEDKVTVTMEEPVTLKFALRYLSLFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDE 257
BLAST of NO06G02560 vs. NCBI_GenBank
Match: EJK74768.1 (hypothetical protein THAOC_03537 [Thalassiosira oceanica]) HSP 1 Score: 352.1 bits (902), Expect = 1.500e-93 Identity = 180/305 (59.02%), Postives = 221/305 (72.46%), Query Frame = 0 Query: 1 MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSLNMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLTLMFEAPNQERISDF----------------------------------------------ELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRDLAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISYFLAPKIDED 260 MFEARLT G +LK++IEA+KDLVQEAN+DCSD +++QAMD SHVSL ++++RSGGFDHFRCDR +SLG N +N+GKILKCAGNED +TLKAED+ D+L+++FE PNQ+RI+DF ELKLMDI++E LGIP+ +YK TI MPS EFQRIIRD+ V+G+T ISCTKEGV+F V GDLG GNV +RQ++ + DE D+V I+MEEPV L FALRYL FFTKAT LGPTV L+MSPDVPIVVEYP+ + G I Y+LAPKIDED Sbjct: 92 MFEARLTSGKILKQLIEALKDLVQEANIDCSDDEISIQAMDNSHVSLVAVSLRSGGFDHFRCDRPLSLGFNATNMGKILKCAGNEDAITLKAEDDGDSLSMVFEGPNQDRIADFGEFARGARGSDSPPGSRREKCWKIDFNFATMRGVGVLVVIFDRKIYELKLMDIDSEQLGIPDTDYKVTIQMPSGEFQRIIRDMQVLGDTLSISCTKEGVKFGVQGDLGTGNVLIRQNAHAEKDE-DRVMIEMEEPVELTFALRYLNFFTKATNLGPTVILNMSPDVPIVVEYPIGETGHIKYYLAPKIDED 395
BLAST of NO06G02560 vs. NCBI_GenBank
Match: XP_005825576.1 (proliferating cell nuclear antigen [Guillardia theta CCMP2712] >EKX38596.1 proliferating cell nuclear antigen [Guillardia theta CCMP2712]) HSP 1 Score: 350.1 bits (897), Expect = 5.800e-93 Identity = 168/258 (65.12%), Postives = 217/258 (84.11%), Query Frame = 0 Query: 1 MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSLNMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLTLMFEAPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRDLAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISYFLAPKIDE 259 MFEARL +G+LLKK+IEAI++LV +AN D S +G+++QAMD SHVSL SL +R GF+HFRCDRS+SLGLNL+++ K+LKCA N+D +TLKAED+ DTLTLMFE+PNQ+RISDFE+KLMDI++EHLGIP+ EYK T+ M + EFQRI+RDL+ IG+T ISCTKE V+FSV GD+G+GNV +R ++AVD +++ + I++EEPV+L FALRYL FTKATPL TV L MSPDVP+V EY + D+G+I +FLAPKIDE Sbjct: 1 MFEARLAQGSLLKKLIEAIRELVTDANFDVSTSGVSLQAMDTSHVSLVSLLLREDGFEHFRCDRSLSLGLNLASITKMLKCANNDDAITLKAEDQGDTLTLMFESPNQDRISDFEIKLMDIDSEHLGIPDTEYKATVKMSAAEFQRIMRDLSTIGDTVSISCTKEAVKFSVEGDIGQGNVIMRHNAAVDKEDEATI-IELEEPVSLTFALRYLNLFTKATPLSSTVTLSMSPDVPLVTEYKVGDMGNIRFFLAPKIDE 257
BLAST of NO06G02560 vs. NCBI_GenBank
Match: XP_013397320.1 (proliferating cell nuclear antigen [Lingula anatina] >XP_013410417.1 proliferating cell nuclear antigen-like [Lingula anatina]) HSP 1 Score: 341.7 bits (875), Expect = 2.100e-90 Identity = 158/258 (61.24%), Postives = 213/258 (82.56%), Query Frame = 0 Query: 1 MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSLNMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLTLMFEAPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRDLAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISYFLAPKIDE 259 MFEARL +G+LLKK++EA+KDL+ + + +CSD G+++QAMD+SHVSL SL +RS GFD FRCDR++SLG+NL+++ KILKCAGN+DVVT+KA D PDT+T MFE+PNQ+++SD+E+KL+D++ +HLGIP +Y C I +PS EFQRI RDL+ I E+ +I CTKEGVRFS SGD+G GN+ + Q+S VD E++ V I+M+EPVTL FALRYL FFTKATPL V L MSP++P+VVEY + D+G + Y+LAPKI++ Sbjct: 1 MFEARLVQGSLLKKVLEAVKDLLTDGSFECSDNGISLQAMDSSHVSLVSLLLRSEGFDTFRCDRNMSLGINLASMAKILKCAGNDDVVTIKAVDNPDTVTYMFESPNQDKVSDYEMKLVDLDGDHLGIPETDYSCVIKLPSAEFQRICRDLSQISESVVICCTKEGVRFSASGDMGTGNIKLVQNSNVD-KEEEAVTIEMQEPVTLTFALRYLNFFTKATPLSNQVTLSMSPEIPLVVEYKIADMGHVRYYLAPKIED 257
BLAST of NO06G02560 vs. NCBI_GenBank
Match: XP_023233455.1 (proliferating cell nuclear antigen-like [Centruroides sculpturatus]) HSP 1 Score: 339.7 bits (870), Expect = 7.800e-90 Identity = 160/258 (62.02%), Postives = 215/258 (83.33%), Query Frame = 0 Query: 1 MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSLNMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLTLMFEAPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRDLAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISYFLAPKIDE 259 MFEARL +G LLKK++EAIKDL+ EA DC+ TG+++QAMD SHVSL SLN+RS GFD FRCDR++S+G+NL+++ KILKCA N+D++T+KA+D+ DT+T +FEAPNQE+ISD+E+KLM+++TEHLGIP+ EY + MPS EFQRI RDL+ IG++ I+CTK+GV+FSVSGDLG GNV + Q++ VD E++ V I M+EPV+L FALRYL FTKATPL P V++ +S DVP+VVEY ++D+G I Y+LAPKI++ Sbjct: 1 MFEARLVQGALLKKVLEAIKDLINEATWDCAATGISLQAMDNSHVSLVSLNLRSDGFDKFRCDRNLSMGINLTSMSKILKCAANDDIITIKAQDDADTVTFVFEAPNQEKISDYEMKLMNLDTEHLGIPDTEYSVVVKMPSSEFQRICRDLSQIGDSVSITCTKDGVKFSVSGDLGTGNVKLSQTANVD-KEEEAVIIDMQEPVSLTFALRYLNSFTKATPLSPQVQISISADVPLVVEYKIEDMGYIRYYLAPKIED 257
BLAST of NO06G02560 vs. NCBI_GenBank
Match: XP_002500879.1 (predicted protein [Micromonas commoda] >ACO62137.1 predicted protein [Micromonas commoda]) HSP 1 Score: 339.0 bits (868), Expect = 1.300e-89 Identity = 156/259 (60.23%), Postives = 216/259 (83.40%), Query Frame = 0 Query: 1 MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSLNMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLTLMFEAPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRDLAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISYFLAPKIDED 260 MFEARL +G+LLKK++E+IKDLV +AN DCS+ G +QAMD+SHVSL +L +RS GF+H+RCDR++++G+NLSN+ K+LKCAGNED++T+KA+D D +T MFE+P+Q++ISDFELKLMDI++EHLGIP+ EY T+ MPS EF RI RDL+ IG+T IS +K+GV+FS +GD+G+ N+T RQ+++VD +E Q I+++EPVTL FALRYL FTKATPL PTV+L MS ++P+VV+Y + D+G + Y+LAPKI++D Sbjct: 1 MFEARLVQGSLLKKVLESIKDLVTDANFDCSNNGFALQAMDSSHVSLVALLLRSDGFEHYRCDRNMTMGMNLSNMSKMLKCAGNEDIITMKADDTGDVVTFMFESPDQDKISDFELKLMDIDSEHLGIPDTEYAATVKMPSSEFMRICRDLSSIGDTVTISVSKDGVKFSTTGDIGQANITCRQNTSVDKEE--QTIIELQEPVTLTFALRYLNSFTKATPLAPTVQLQMSKELPVVVQYLIADMGYVRYYLAPKIEDD 257
BLAST of NO06G02560 vs. NCBI_GenBank
Match: AFV81453.1 (proliferating cell nuclear antigen, partial [Scrobicularia plana]) HSP 1 Score: 338.6 bits (867), Expect = 1.700e-89 Identity = 156/259 (60.23%), Postives = 211/259 (81.47%), Query Frame = 0 Query: 1 MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSLNMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLTLMFEAPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRDLAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISYFLAPKIDED 260 MFEARL +G+L KKII+AIKDL+ EA DC+ +G+T+QAMD SHVSL SL++R GFD FRCDR++++G+NL ++ KI++CAGN+DV+T+K D DT+T +FE+PNQE++SD+E++L+D++TEHLGIP +Y C + MPS EFQRI RDL+ IGE+ I+ CTKEGV+FS SGDLG GN+ + Q+S+ D E+D V I+M E VTL FALRYL FFTKATPL P VKL MSP+VP+VVEY + ++G + Y+LAPK+++D Sbjct: 1 MFEARLVQGSLWKKIIDAIKDLLTEAIFDCNSSGITLQAMDGSHVSLVSLSLRCEGFDTFRCDRNLAMGINLPSMAKIIRCAGNDDVITVKTGDNADTVTFVFESPNQEKVSDYEVRLVDLDTEHLGIPETDYSCVVRMPSAEFQRICRDLSQIGESVIVCCTKEGVKFSASGDLGTGNIKLAQTSSCD-KEEDNVVIEMNEAVTLTFALRYLNFFTKATPLSPQVKLSMSPEVPLVVEYKVAEMGHLRYYLAPKLEDD 258
BLAST of NO06G02560 vs. NCBI_GenBank
Match: XP_009022843.1 (hypothetical protein HELRODRAFT_185039 [Helobdella robusta] >ESN98905.1 hypothetical protein HELRODRAFT_185039 [Helobdella robusta]) HSP 1 Score: 338.2 bits (866), Expect = 2.300e-89 Identity = 160/259 (61.78%), Postives = 209/259 (80.69%), Query Frame = 0 Query: 1 MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSLNMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLTLMFEAPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRDLAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISYFLAPKIDED 260 MFEARL +G+LLKK++EA+KDL+ EA DC+ TG+++QAMD+SHVSL SL +RS GFD +RCDR+IS+G+NL ++ KIL+CAGNED +T+KA D DT+T MFE+PN E++SD+E+KLMD++TEHLGIP +Y C I +PS EFQRI RDL+ IGE+ +I CTKEGV+FS +GDLG GN+ + QS+ VD E + V I+M+E VTL FALRYL FFTKATPL V L MS DVP+VVEY + D+G I Y+LAPKI+++ Sbjct: 1 MFEARLVQGSLLKKVLEAVKDLLNEATWDCNGTGMSLQAMDSSHVSLVSLCLRSDGFDTYRCDRNISMGINLGSMSKILRCAGNEDAITVKANDTTDTITFMFESPNGEKVSDYEMKLMDLDTEHLGIPETDYSCVIKLPSSEFQRICRDLSQIGESVVICCTKEGVKFSANGDLGTGNIKLAQSANVD-KEDEAVVIEMQEAVTLTFALRYLNFFTKATPLSARVSLSMSADVPLVVEYKIGDMGYIRYYLAPKIEDN 258 The following BLAST results are available for this feature:
BLAST of NO06G02560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G02560 ID=NO06G02560|Name=NO06G02560|organism=Nannochloropsis oceanica|type=gene|length=1508bpback to top protein sequence of NO06G02560.1 >NO06G02560.1-protein ID=NO06G02560.1-protein|Name=NO06G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bpback to top Synonyms
Publications
|