NO06G02550, NO06G02550 (gene) Nannochloropsis oceanica

Overview
NameNO06G02550
Unique NameNO06G02550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1776
Alignment locationchr6:716932..718707 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:716932..718707 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0003341cilium movement
GO:0060271cilium assembly
GO:0060271cilium assembly
GO:0003341cilium movement
Vocabulary: INTERPRO
TermDefinition
IPR033365CFAP53
Homology
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BLAST of NO06G02550 vs. NCBI_GenBank
Match: CBN77478.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 136.3 bits (342), Expect = 2.700e-28
Identity = 134/387 (34.63%), Postives = 198/387 (51.16%), Query Frame = 0 
Query:  155 TLKARKAALQEQAYALQARNEAARRALVQSCLDRQWRDGCDSARLLDSQALQRVMTEAQQQQLIEKQVRQDQVAKHDTAFHANIRRHVEELDEAESHKQALQAQRKRETVVTLETQIALGQAEQQKXXXXXXXXXXXXXXXXAADLKRNEEQATARRDAAWARGQDVREFNDRRLEQVRARAEEERQRDLALLEHAMALEAKEVAREKAKDTRAHLEARIYRQYLEEVMKKESEDERAVDAVRQAKEDEVWEQREXXXXXXXXXXXXXXXXXXXGRQEQLRYKALAGERVAEEAAREVEKWKLEQ---AAGMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKHMQKEEAALMQRQKSQAGIARTYFPLRLEKW 539
            T++ RK  + ++A  L+   EAARR  VQ C DRQWRD CD AR LDS+A    +T  + +Q+ EK  R+++ A+ +    A IR  +  L+  E   +  + +R +     L TQ+A     +++                 A ++  +E+A A++  A ARG +VR+FN+ R E     AE+ R++DL LL++A+  +    A EKAK        R Y +YL+E M KE+ DE   D +RQ  E  +W+QR+                   GRQEQ+R KAL   R  E+ A ++E+ +L++    A   XXXXXXXXXXXXX              XXXXXXXX       K M+  E    +R + QAG+  T+ PL+  +W
Sbjct:  103 TMEERKTRILDKATKLKNAREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEKAAREEENARQEEFHMAKIRERIAYLEAQEKAAEEKRERRNQLMRSDLNTQVAYNADRRRQLWEQTARDDLKELNELRAIVRAEQEKAEAKKKEAHARGAEVRDFNEARREMRVVAAEQAREQDLVLLDYAIEKDKAGEAEEKAKKEEEQRVLRQYNEYLKEQMAKEAADEAQYDEIRQEAETRIWDQRDAQLKAQNDAREALMKQVHRGRQEQIRLKAL---RDDEQLATDLEQARLDRESFLAXXXXXXXXXXXXXXXXLDNTAKLRGQMAGAXXXXXXXXQEEYLRVKQMEAYERRHRERLEKQAGVVITHHPLKHTQW 486
The following BLAST results are available for this feature:
BLAST of NO06G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBN77478.12.700e-2834.63conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000205NSK000205Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02550.1NO06G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|544781gene_6574Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02550.1NO06G02550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02550 ID=NO06G02550|Name=NO06G02550|organism=Nannochloropsis oceanica|type=gene|length=1776bp
CATATTTGCATTGTTCTACGAAATGCCACGCCCGGCATTATTATCTCGAT
GCCACCTTTTTTGATTGACAATGGGTCTACCCACATTAAGTCTCGACACG
GCTGCCCCATTACTTCGCCTACGCATCTGTCCCATGTTCACCCCACCGCC
ATTTCTGTGCCCGACAGACGTTACACTTTCCTCCCCCCTGCTTCTGTCCA
TGTCCTTGCGTGCAGCAGCCACGCCTAAGCAAAGCTTTGACCGACAACGT
GATCGCCTCTTGATTCGTGAAAATTTTGCAAAGGCCGTGGCTCAGGACAC
CCAAGCATTTCGCAAGACTGAATGGGAAGTCCGGACCGATGCCCTGGCCG
TCAGTCGGCACGAGCAACGACAACGCCAGCAAGCAGCCGCTCAAGCGCTA
GCGGCAGAAGCCAAAGTCGCCCAGCTTCTTAAGGATCAACAGTGTCGTGA
GACTGCTAAGAAGAATGCACTCTCTCAGCAAGGAGAAGTGGGACGCACGA
CCAGCCGTCTCCGGCCCAGGACCGACCCAGCGACGTTGAAAGCGCGTAAG
GCAGCCCTCCAAGAGCAGGCGTATGCACTCCAAGCTCGCAATGAGGCAGC
ACGTCGGGCATTGGTGCAATCGTGTCTCGATCGACAGTGGCGTGATGGAT
GCGATAGTGCGCGTTTGCTCGACAGTCAGGCCCTGCAGCGAGTCATGACC
GAGGCTCAGCAGCAACAGCTCATAGAGAAGCAAGTCCGCCAGGATCAAGT
GGCTAAACATGACACTGCTTTTCACGCCAATATCAGACGACATGTCGAAG
AATTGGATGAGGCGGAGAGCCACAAGCAAGCGTTGCAGGCGCAGCGAAAG
CGGGAGACGGTGGTGACGCTTGAAACGCAAATCGCCCTTGGACAGGCCGA
GCAACAGAAAGCCAAGGCCGCCCAGGCTGCGGAGGATGCCGAAGAGCTCG
CACAGATTGCGGCGGATTTAAAGCGAAACGAAGAACAAGCTACTGCGCGT
CGAGACGCGGCTTGGGCGAGAGGGCAAGACGTCAGGGAGTTCAACGATCG
GCGGTTGGAGCAGGTACGTGCACGGGCGGAGGAGGAGCGGCAGCGGGATT
TGGCGTTGCTGGAGCATGCAATGGCACTAGAAGCTAAGGAGGTGGCGCGG
GAGAAGGCAAAAGATACCAGGGCCCATTTGGAAGCCAGGATTTACCGACA
GTATTTGGAGGAAGTAATGAAGAAGGAATCGGAGGACGAGCGGGCGGTGG
ATGCGGTGAGGCAAGCAAAGGAGGATGAGGTGTGGGAGCAGCGCGAAGCC
ATGTTCCAGGCGCGGAAAAAGAAACACGAGAGATTATGGCAGCAGGTAGA
TGCGGGACGACAGGAGCAGTTGCGATACAAAGCCTTGGCAGGAGAGAGGG
TGGCGGAGGAAGCAGCGAGGGAGGTAGAAAAGTGGAAGCTGGAGCAGGCG
GCTGGGATGGAAGAGGAGCGACGAGCACAGGAAGCTCATCGAGCGGCCGT
AAAAGAGAATCAGGAGATGTTACAGCAGCAGGTGGAGTCGCGACAGCGAC
GGGAGCGGTGGGAGCAGCAGCAGGAGTATTTAAGGACAAAGCATATGCAG
AAGGAGGAAGCAGCCCTAATGCAACGTCAGAAGAGCCAGGCTGGGATTGC
ACGGACGTATTTTCCTCTGCGCTTGGAAAAGTGGATAGATTAGAAATTGA
AAAGACACATGACGAGTTCTCTTCGATTTCTGACCCTTGAAGGAGGAAAA
ATCATGCCAAAGAAATGTAAATCGAG
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protein sequence of NO06G02550.1

>NO06G02550.1-protein ID=NO06G02550.1-protein|Name=NO06G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MGLPTLSLDTAAPLLRLRICPMFTPPPFLCPTDVTLSSPLLLSMSLRAAA
TPKQSFDRQRDRLLIRENFAKAVAQDTQAFRKTEWEVRTDALAVSRHEQR
QRQQAAAQALAAEAKVAQLLKDQQCRETAKKNALSQQGEVGRTTSRLRPR
TDPATLKARKAALQEQAYALQARNEAARRALVQSCLDRQWRDGCDSARLL
DSQALQRVMTEAQQQQLIEKQVRQDQVAKHDTAFHANIRRHVEELDEAES
HKQALQAQRKRETVVTLETQIALGQAEQQKAKAAQAAEDAEELAQIAADL
KRNEEQATARRDAAWARGQDVREFNDRRLEQVRARAEEERQRDLALLEHA
MALEAKEVAREKAKDTRAHLEARIYRQYLEEVMKKESEDERAVDAVRQAK
EDEVWEQREAMFQARKKKHERLWQQVDAGRQEQLRYKALAGERVAEEAAR
EVEKWKLEQAAGMEEERRAQEAHRAAVKENQEMLQQQVESRQRRERWEQQ
QEYLRTKHMQKEEAALMQRQKSQAGIARTYFPLRLEKWID*
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Synonyms
Publications