NO06G02520, NO06G02520 (gene) Nannochloropsis oceanica

Overview
NameNO06G02520
Unique NameNO06G02520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3655
Alignment locationchr6:708214..711868 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:708214..711868 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0070461SAGA-type complex
GO:0070461SAGA-type complex
Vocabulary: INTERPRO
TermDefinition
IPR024738Hfi1/Tada1
Homology
BLAST of NO06G02520 vs. NCBI_GenBank
Match: EWM26265.1 (hypothetical protein Naga_100145g12 [Nannochloropsis gaditana])

HSP 1 Score: 181.8 bits (460), Expect = 1.000e-41
Identity = 121/280 (43.21%), Postives = 148/280 (52.86%), Query Frame = 0
Query:    2 EGGGGCLEGLLERQQPEGHHRERRRP---PAEAHAHGNPHAPPMARQDLINLKMAVFERLSHGHMQRSNSAGSSGSARLPHPPLCRLWALYRKSLRLFLIGELTKPELDAVVIYTLGDENVQVHNALVRGLVHNVMASSLPSHPEGIAATTMSRVRGLGFEGDAND----GVLLKGRMEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQTLHAIFQREFGEGSAVWDVWAPMQQANHRRAAAEAAAQLAELEFRQVKSLMD 275
            +G  GC      RQ PEG+  ERR P   P   H+       P  R+DL  LK+AVFE++S  H +R++    SGSA+   PP+ RLWALYRKSLRLFLIGELTKPELDAVVIY+LGDENV VHN L+RG+V NV       HP   +    SR  G+  +    +    G  + GR EG                                              +Q L   F+RE G  SA+WDVW PM+QA+HRRA AEA A  AE+EFR+VKS MD
Sbjct:    6 DGASGC-HAPTSRQPPEGYDWERRGPRSSPTRDHS-------PGLRRDLTGLKIAVFEKISRRHQRRTSGNEGSGSAQQTGPPVARLWALYRKSLRLFLIGELTKPELDAVVIYSLGDENVHVHNDLIRGVVQNVSIQESERHPGQASGVPTSRFCGISKKVVRREIGGYGNSVHGR-EG---------------NEHRKRAGDVAGDDRVEPSEGEDGEDSDTEQSQALLRAFERELGAKSALWDVWGPMRQASHRRAVAEARACRAEIEFRRVKSRMD 261          
The following BLAST results are available for this feature:
BLAST of NO06G02520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26265.11.000e-4143.21hypothetical protein Naga_100145g12 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000208NSK000208Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02520.1NO06G02520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597372gene_6570Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100145g12gene4258Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02520.1NO06G02520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02520 ID=NO06G02520|Name=NO06G02520|organism=Nannochloropsis oceanica|type=gene|length=3655bp
ACAGCGGCATTGCTACGTGACACGGGCCAGTGGGAAGCCCGACGCTATTG
CTAGCTTCTGCGCAAGTAACACACTCGCATCATCGTGCCGTCAATCACGC
ACCGAGGTTGACCTCTCTATAACTGGGACGGGCACAAAGAGACGTGGCAC
CAGCTGGTTGCGTTGAGGAAGGATGGAAGGTGGTGGGGGCTGCCTGGAGG
GGCTGTTGGAAAGGCAGCAACCAGAAGGACATCACCGGGAACGGAGGAGG
CCTCCAGCCGAGGCCCACGCACATGGAAACCCACACGCCCCACCGATGGC
ACGACAAGATTTAATCAACCTTAAAATGGCAGTGTTTGAAAGACTTTCGC
ATGGCCACATGCAACGGAGCAACAGTGCCGGTAGCAGTGGGAGTGCGAGG
CTGCCACACCCGCCGTTATGTCGGCTGTGGGCCTTGTATCGCAAGTCCCT
CCGCCTGTTCTTGATTGGGGAGCTGACCAAGCCGGAGTTGGATGCAGTGG
TAATATATACGCTAGGCGACGAAAATGgtacgtgcggaatgggttgacgg
atgggagagtggagctttgagtaagactttgggacaaaaaaaaatggtct
caccgagcatgtggcagcctgcatcaccattttctatcagcatacgagca
tatgaatattttgcactgcaattcgaaggcacctcatcaatttcggaatt
aaatctgatttatatctgcgttctatcctccacatttactttcacattca
tgcagTACAAGTGCACAACGCTCTAGTCCGAGGTCTAGTCCATAACGTCA
TGGCCTCAAGCCTGCCCTCCCATCCTGAAGGAATAGCAGCAACGACAATG
AGCAGAGTTCGAGGCCTGGGGTTTGAGGGCGATGCCAATGATGGGGTCTT
ATTGAAAGGTCGGATGGAAGGAGAGGGGAGCGCTGGTTCTCCGAATAACA
GCAGCAGCAGCGGCAGCGGCAGCGGTCAAAAACGAATACGACTAAAAGAA
CAGACAAAAGAAGAAGAGGATGGGGATAAGGATGAGGACGAGGATGAGGA
GACAGAGCGCGCTCAGACGCTACATGCAATTTTTCAGAGAGAATTTGGGG
AAGGCAGTGCGGTGTGGGATGTATGGGCGCCAATGCAGCAAGCTAATCAT
CGACGCGCGGCAGCAGAAGCAGCTGCCCAACTAGCAGAGCTGGAGTTTCG
GCAGGTCAAGTCCCTCATGGACTTTCGTATGGTGAATGGGCTGCCGTCGT
TTTCATCCATTCCTCCCCCTCCTTCTCCGCCCACTTCCTGTCCTAGTTCG
GCTTCTGCTTCCCAACGGCCGACCACGGCCTATTCAGGCTCGGTAGGTTC
TTCGTCGTCGTCGTCGTCTCCCGCTTCCTCATTCACATCCCCTTCCAGAT
GCGCGCAACCTGTGATAATGTCCGCGCCAGCAGTAGCAGTAGCAGCAGCA
GCAGCAGCAGCAGCAATAACGACACGATCGGCAAGTGAAGAGACTGAGGA
AGGATTAGGAAAGGAGGGAGGAAAAGAAGAATCTGGAGCGAGGGCCGGGT
CCTCCCCTCCACCATCAGGTGCAGCAGCAGTAGAGCTAGCTAGAAAGAAA
AAGGGGATGGAAAACAGAAAAGGAGGAGGGAGGGGGGGAAAGGACGTTGT
CGATAGCGCTGGCATACTGTCAAGAGCCAGTGCTGCATCAGAACTAGAAC
CACGGGCGGCTGTGGCAGCAACAGCAGGAGCAGGTATGACTGCGGCAACA
ATCGGAGATAGGAAAGATGAAGGCAAGGATGGGTCTGACGCGAGCCCTGC
AATTGTATCACGAGCAGGAACACATATCTCGGCGCCTATCCTGGCCGTTG
GGGCAGCTCCAACAACACCAGCAGCAATAACAGCACCATCAACACTAACC
TCACCAACAGCACCAGAAGCGCAACCAGCCAGCAAGGGGACATATGGGAT
AGGGCCAGAAGGAGGGCAATCAGAGCCGCAGGAGGACGATGGAAATGTGG
TTCCCGCTCTGCCAGCGCTACCACCATTACCGCCATTGGCAGCAAGCGCA
TTCTCGTTGGGTGCCGCTGCAGCTGGTGGCATCAACCCACCGGATGAAAA
CCAGAAGGAATCAGAGAAGGAGGAGGAAGAGTCGGAGAAGGCATTAGTGA
GTGCTTCAGCAACAGGAGCAGTGGTAGCTCCATCTGCACCAGCACCAACA
GCACCAGCAGAGCCAGCAGCACCAGCAACATCGGCATCATCATCGTCCCA
ACCACGCGCCCCTCCAGTGGCGGTGGTGGCAGCTGCTGCTGATGAGGCAC
CAAAAAAAGAGGGATATGGGACACATGCGATTGACGTTGTCATACTTACC
CCTTCCTCTTCACCTCCTATTATTTCTGCTGCAGCTACTTCTCCTTCCTC
AGAGCGACCTGCCTCTCCTTCTTCTACATTCAAGAGCGCAGCACCCACAG
GCAGACTCTCGCCTCCCCCACCTCCACCACCGCCTTCCTCCGCTCCTTCC
TTGCAGCAGCAGCAGCAGCAACAAGAGCAGCAGCATCAGTGGCAACCCAT
GCCCACACTCAAGCACGAAGATAAATGTGAGGAGCCACCTGTGGTGACCG
AAGCCTCCTACCTTCCCGAGGCATGCATGCCCCACCCCCTAATCATCCAC
TTCCTCCTACGCACTGCCGGTGCCACCGACTCCGAGCTTGGGTCACGTCT
TGCTCATTCAGCAGTAGCAGCAGCAGCGGGAAGAGGTGGTGGAGGGGAAA
GGGCAAGCCCCTCCCCGACGAAGCGTGCAAGGAAGAATCATGCATATACA
AGGCATTTGGCCGTGTCAGTGGAAGCGATGGAAGGCCTAGATGAAGGTGC
GGAGCTGTTTGTGAAACGCTTGCTGGCCCGGTGTGTTCATGTGTCCAAGA
GGCAACAAGAGGGAGGCAGTACCGTTGTCATTCCTCCTTTTCCCATGCCT
CGGCTTGGGACTGAGGGAGGTATTGGTGCAAAAGTAGGAGCAGTAGGAGC
AGCAGAAGCAGCAGCAGTGCCTGTGAGAGGAGAGGCATTAGGGCAAATTG
AGTCGTCTCAGTCTGGTGCCGCCATTTTGGAGATACAGATGGTGAGAACC
GATGAAGAAGACGTGCCGAATACAACGACTGCAGTGGCGGCGGGGCAGGA
TGGCTGCAGCAACAGAAAGGAAGATGGCGATGCGGGTGCTGGATCACGTG
CAGAGGAGACGGCGAAGAAAAAGAATGGTGGCGCGGTAATGATTGATGCA
GCAATGCTGTTCAAAGCTTTGCGTGTGCCCAGCACGGATGACCGGGACCC
GCTGGGACGTTTGTTCCCACCGGACGGACTACTGGAAGAGCTAGTGGCCT
CGTCTGGTATCTAGGGAGGAAAATAAGCGTGGGAAAAGGAAGGATGCGAT
GGGAAGAAAGGGGATAATAAGGAGAGAAAAGAGGTTGTCTTACCGACCAG
GATGAAGCGAAAGCGTGTGAATTACCAAAGAATCGACTTTGGATGTAAAC
AGTGCACAAACCCGCGTTTGTACAATAAGATCAGAAAAGGAAAGGGGTCG
AGGAAAAGGTGTTTGTCGGTCTGTGTGCGTAAGAACCAAGACCAGCACAC
GCACTGACAAGGAGCGGTGCGATCCCAAAATGAATAACAAAAGACTTTGT
CACGA
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protein sequence of NO06G02520.1

>NO06G02520.1-protein ID=NO06G02520.1-protein|Name=NO06G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=988bp
MEGGGGCLEGLLERQQPEGHHRERRRPPAEAHAHGNPHAPPMARQDLINL
KMAVFERLSHGHMQRSNSAGSSGSARLPHPPLCRLWALYRKSLRLFLIGE
LTKPELDAVVIYTLGDENVQVHNALVRGLVHNVMASSLPSHPEGIAATTM
SRVRGLGFEGDANDGVLLKGRMEGEGSAGSPNNSSSSGSGSGQKRIRLKE
QTKEEEDGDKDEDEDEETERAQTLHAIFQREFGEGSAVWDVWAPMQQANH
RRAAAEAAAQLAELEFRQVKSLMDFRMVNGLPSFSSIPPPPSPPTSCPSS
ASASQRPTTAYSGSVGSSSSSSSPASSFTSPSRCAQPVIMSAPAVAVAAA
AAAAAITTRSASEETEEGLGKEGGKEESGARAGSSPPPSGAAAVELARKK
KGMENRKGGGRGGKDVVDSAGILSRASAASELEPRAAVAATAGAGMTAAT
IGDRKDEGKDGSDASPAIVSRAGTHISAPILAVGAAPTTPAAITAPSTLT
SPTAPEAQPASKGTYGIGPEGGQSEPQEDDGNVVPALPALPPLPPLAASA
FSLGAAAAGGINPPDENQKESEKEEEESEKALVSASATGAVVAPSAPAPT
APAEPAAPATSASSSSQPRAPPVAVVAAAADEAPKKEGYGTHAIDVVILT
PSSSPPIISAAATSPSSERPASPSSTFKSAAPTGRLSPPPPPPPPSSAPS
LQQQQQQQEQQHQWQPMPTLKHEDKCEEPPVVTEASYLPEACMPHPLIIH
FLLRTAGATDSELGSRLAHSAVAAAAGRGGGGERASPSPTKRARKNHAYT
RHLAVSVEAMEGLDEGAELFVKRLLARCVHVSKRQQEGGSTVVIPPFPMP
RLGTEGGIGAKVGAVGAAEAAAVPVRGEALGQIESSQSGAAILEIQMVRT
DEEDVPNTTTAVAAGQDGCSNRKEDGDAGAGSRAEETAKKKNGGAVMIDA
AMLFKALRVPSTDDRDPLGRLFPPDGLLEELVASSGI*
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Synonyms
Publications