NO06G02460, NO06G02460 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G02460 vs. NCBI_GenBank
Match: EWM26260.1 (Vesicle transport protein, Got1/SFT2 [Nannochloropsis gaditana]) HSP 1 Score: 229.9 bits (585), Expect = 1.100e-56 Identity = 160/240 (66.67%), Postives = 177/240 (73.75%), Query Frame = 0 Query: 50 TLLDSPRRSHLLSLLRYRSSVSLSRGLN-----CLLHLPRGGAFSYNNDQGYGRGGYPPY-DDDYGDDPYDTDAYYQPXXXXXXXXXXXXXXXAPGRASPXXXXXXXXXXXXXXFGSLINEPMPPSLKRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLLK 284 T +P S L L + RSS + + N L RGGA+ +DQGYGRGGYPPY XXXXXXXXXXXXXXX XXXXXXXXX F SL+NEP+PPSLKRLGFTLLGASLVLTAMG+SLFFERNLLRLGNLC+I+GLPLYFGPGR+MRLL A+EKLRAS+CFCLGV LVLRGNSF GMLLE+FGFFNLFANFFPVVLA+LR LP+VGDLLK Sbjct: 66 TRRQTPSLSRLPRLFQARSSYTAFQHANHPQYLYTLRNVRGGAYPSRDDQGYGRGGYPPYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASASSFRSLVNEPVPPSLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLK 305
BLAST of NO06G02460 vs. NCBI_GenBank
Match: XP_002176159.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >XP_002185021.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC42866.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC43468.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 111.7 bits (278), Expect = 4.400e-21 Identity = 53/112 (47.32%), Postives = 79/112 (70.54%), Query Frame = 0 Query: 171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLL 283 +++G TLL + +++T +GISLFF + L+RLGNL I G+P+ GP R M +K RA++C LG+ LV G+ FGM+LE FG NLF N FP+++AV++ +PIVG+L+ Sbjct: 1 RKVGLTLLASGIMVTMLGISLFFNKTLMRLGNLLFIAGVPVTLGPSRTMGYFLQPQKTRATVCLVLGILLVFFGHPVFGMVLEAFGLLNLFGNMFPLLMAVVKQMPIVGNLM 112
BLAST of NO06G02460 vs. NCBI_GenBank
Match: GAX24953.1 (hypothetical protein FisN_2Lh229 [Fistulifera solaris]) HSP 1 Score: 109.8 bits (273), Expect = 1.700e-20 Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 0 Query: 171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLL 283 +R+GF LLG+ ++T +GISLFF + L+RLGNL I G+P+ GP R + EK RA+ C LG+FLV G FG++LE FG NLF N FP V AV +N+P +G LL Sbjct: 123 RRIGFGLLGSGSIITMLGISLFFNKTLMRLGNLLFIAGVPMTLGPSRTLGYFVKPEKFRATGCLALGIFLVFIGMPVFGIILEAFGILNLFGNLFPFVWAVAKNMPGIGPLL 234
BLAST of NO06G02460 vs. NCBI_GenBank
Match: GAX12398.1 (hypothetical protein FisN_2Hh229 [Fistulifera solaris]) HSP 1 Score: 109.4 bits (272), Expect = 2.200e-20 Identity = 65/153 (42.48%), Postives = 85/153 (55.56%), Query Frame = 0 Query: 171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLL----KXXXXXXXXXXXXXXXXWGRGD--YYGGRESGPRSSR 318 +R+GF LLG+ ++T +GISLFF + L+RLGNL I G+P+ GP R + EK RA+ C LG+FLV G FG++LE FG NLF N FP V AV +N+P +G LL +GR + YYG R R SR Sbjct: 121 RRIGFGLLGSGSIITMLGISLFFNKTLMRLGNLLFIAGVPMTLGPSRTLGYFVKPEKFRATGCLALGIFLVFIGMPVFGIILEAFGILNLFGNLFPFVWAVAKNMPGIGPLLSGGNNRKRREPKRDEYSYEDDYGRDEDPYYGDRRPPSRDSR 273
BLAST of NO06G02460 vs. NCBI_GenBank
Match: EJK77507.1 (hypothetical protein THAOC_00660 [Thalassiosira oceanica]) HSP 1 Score: 109.0 bits (271), Expect = 2.800e-20 Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 0 Query: 169 SLKRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDL 282 S K++G LL A TA+GI+LFF + L+RLGNL + G+PL GPGR M +K RA+ C G+ LVL G+ G+LLE+FG NLF N FP+V+ + +NLP+VG L Sbjct: 191 SNKKVGIILLSAGAAFTALGITLFFNKTLMRLGNLLFVAGVPLMIGPGRTMGYFLQPKKARATGCLACGILLVLVGHPVIGILLEVFGLLNLFGNMFPLVMMMAKNLPVVGSL 303
BLAST of NO06G02460 vs. NCBI_GenBank
Match: OEU22775.1 (Got1-like protein, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 108.6 bits (270), Expect = 3.700e-20 Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 0 Query: 171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLL 283 +++G LLG LT +G+SLFF + L+RLGNL + G+P+ GPGR F +K RA+ C LG+ LV G G+LLE+FGF NLF N FP+ A+++ +P +G LL Sbjct: 1 RKIGLPLLGIGAALTLLGVSLFFNKMLMRLGNLFFVAGVPMTIGPGRTAGYFFQPKKARATACLSLGIILVFAGRPILGILLEVFGFINLFGNMFPLAFAIMKQMPFIGPLL 112
BLAST of NO06G02460 vs. NCBI_GenBank
Match: XP_002291182.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED91289.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 105.9 bits (263), Expect = 2.400e-19 Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = 0 Query: 169 SLKRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDL 282 S ++LG L + TA+GI+LFF + L+RLGNL + G+PL GPGR + +K RA+ C G+FLVL G+ G+LLE+FG NLF N FP+V+ + +NLP+VG L Sbjct: 4 SNRKLGIIFLSSGAAFTALGITLFFNKTLMRLGNLLFVCGIPLMLGPGRTVGYFLQPKKARATGCLGCGIFLVLVGHPVIGILLEVFGLLNLFGNMFPLVMMMAKNLPVVGGL 116
BLAST of NO06G02460 vs. NCBI_GenBank
Match: XP_009040386.1 (hypothetical protein AURANDRAFT_8288, partial [Aureococcus anophagefferens] >EGB04828.1 hypothetical protein AURANDRAFT_8288, partial [Aureococcus anophagefferens]) HSP 1 Score: 100.5 bits (249), Expect = 1.000e-17 Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 0 Query: 171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIV 279 ++ G + A T +G+SLFFE+NL+RLGN+ ++ G P+ GP R R + KLR S+CF G L+L G+ G+++EIFGF NLF N FP+ A+ +NLP V Sbjct: 1 RKTGLIMCAAGAASTMLGVSLFFEKNLIRLGNVLLVAGAPIVVGPQRASRYVLNPAKLRGSLCFACGFMLILSGHPLLGIVVEIFGFLNLFGNLFPLFTAMFKNLPFV 108
BLAST of NO06G02460 vs. NCBI_GenBank
Match: XP_004351717.1 (golgi transport protein 1 [Cavenderia fasciculata] >EGG14997.1 golgi transport protein 1 [Cavenderia fasciculata]) HSP 1 Score: 100.5 bits (249), Expect = 1.000e-17 Identity = 46/112 (41.07%), Postives = 73/112 (65.18%), Query Frame = 0 Query: 171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLL 283 +++G L G L T G+ +FF+R LL +GNL + G+ L G R F +K + ++CF G+FLV+ G +F G+++E FGF NLF + FP+V+A+LR LP++G++L Sbjct: 7 QKIGVMLSGMGLFFTFFGVMMFFDRGLLAIGNLLFLSGIALGLGLTRTFNFFFQMKKAKGTVCFFFGIFLVILGRTFIGLIIEAFGFINLFGDAFPIVIAILRKLPVIGNIL 118
BLAST of NO06G02460 vs. NCBI_GenBank
Match: CBJ26149.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 100.1 bits (248), Expect = 1.300e-17 Identity = 47/112 (41.96%), Postives = 71/112 (63.39%), Query Frame = 0 Query: 171 KRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGPGRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFFPVVLAVLRNLPIVGDLL 283 K+ G L S++LT MG+SL FE+NL+RLGNL + G+ L+ GP ++R KLR S+ F +G F V G+ G+ +E+FGF NLF N P+V A+ N+P + +++ Sbjct: 219 KKYGIYALAGSVLLTMMGVSLMFEKNLIRLGNLGFVAGMSLFIGPSNVVRYFTQASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFIKEIM 330 The following BLAST results are available for this feature:
BLAST of NO06G02460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G02460 ID=NO06G02460|Name=NO06G02460|organism=Nannochloropsis oceanica|type=gene|length=1087bpback to top protein sequence of NO06G02460.1 >NO06G02460.1-protein ID=NO06G02460.1-protein|Name=NO06G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bpback to top Synonyms
Publications
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