NO06G02440, NO06G02440 (gene) Nannochloropsis oceanica

Overview
NameNO06G02440
Unique NameNO06G02440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1212
Alignment locationchr6:692611..693822 +

Link to JBrowse

Properties
Property NameValue
DescriptionSporangia induced dynein regulatory complex protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:692611..693822 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0048870cell motility
Vocabulary: Cellular Component
TermDefinition
GO:0031514motile cilium
Vocabulary: Molecular Function
TermDefinition
GO:0017137Rab GTPase binding
GO:0008017microtubule binding
Homology
BLAST of NO06G02440 vs. NCBI_GenBank
Match: XP_009032527.1 (hypothetical protein AURANDRAFT_19143 [Aureococcus anophagefferens] >EGB12903.1 hypothetical protein AURANDRAFT_19143 [Aureococcus anophagefferens])

HSP 1 Score: 92.0 bits (227), Expect = 4.400e-15
Identity = 76/319 (23.82%), Postives = 160/319 (50.16%), Query Frame = 0
Query:   64 QYENMSMAGLQDAVGQLEQSTADARMSHSDAQAEQDAFHQEHTITIQSELRVATKALTEIQKQVEDLSTDHHLELRAYRDKLIALHYYHTLNLTSVASEREQLLGKEVEAHTSSVHMIQ-----IKQQLGQSSSSSFGSGHRTRTGDEGDRLQDCLTNECIHLQQSLESNLLDIEGVCTTRFAQLQKNLELRHMKEMHGMEERADQHRQELVQQHEAVIKKLQN-------YYQNVVEEQSQRLQAREHTRITAEAKANSDRIRSKKLEEAIDQLRQPLAVAILREAELKKAVKVRARDKASLRHTRSRLRFLDAKIQE 371
            +Y++M +  LQ+ V  L+Q  A   +  +  Q E+D     + IT + E++   + +    +++E +  +H +E+R Y  K+  L Y H  NL ++A E E  + +E E H +  + ++     +K +L +   S+          +E  ++        + +++  E  L ++   C  R  QL  +LELR    +H +EER + H  +L++ HE  + +  N       YY ++  +  + +++ +      + KA +++     + +   +L++PL VA+   AEL+  +K R +D+ SLR++R+RL+ L+ ++++
Sbjct:   26 EYDSMDLEMLQEVVPMLKQQLAKCTLDRNYVQLERDTIQMFYDIT-KGEVQDIERQIAAKDREMELMEDNHRVEVRVYLQKVKHLEYEHNNNLRNIAVEGEHFMTEEHENHDNRAYELKKTKKSLKLELAEREWSN---------AEEIKQVXQQHAKNLLKMREGFEGQLGELSDRCGKRLEQLAADLELRRKVHVHEIEERKNLHINDLMRNHEKALGRAGNIQNDFNSYYNDITNDNLKLIKSLKDEVAEMKKKAVANQKLMHDISQENMRLKEPLTVAVAEVAELRAQLKDRQKDRLSLRNSRARLQVLEQQLRD 334          
BLAST of NO06G02440 vs. NCBI_GenBank
Match: CBN74708.1 (PF2 [Ectocarpus siliculosus])

HSP 1 Score: 88.2 bits (217), Expect = 6.400e-14
Identity = 72/299 (24.08%), Postives = 148/299 (49.50%), Query Frame = 0
Query:   73 LQDAVGQLEQSTADARMSHSDAQAEQDAFHQEHTITIQSELRVATKALTEIQKQVEDLSTDHHLELRAYRDKLIALHYYHTLNLTSVASEREQLLGKEVEAH-TSSVHMIQIKQQLGQSSSSSFGSGHRTRTGDEGDRLQDCLTNECIHLQQSLESNLLDIEGVCTTRFAQLQKNLELRHMKEMHGMEERADQHRQELVQQHEAVIKKLQNYYQNVVEEQSQRLQAREHTRITAEAKANSDRIRSKKLEEAIDQLRQPLAVAILREAELKKAVKVRARDKASLRHTRSRLRFLDAKIQE 371
            LQ+ V  L+Q    + +  +  Q E+D     + IT Q E++      +   +++E +  +H +E+R Y  K+  L Y H  NL S+  + EQLLG E + H   S  + + K+ +       +         +E  +++         +++  E +L ++   C  R A L+ +LELR   ++H +EER + H  +L++ HE    +++ YY ++  +  + +++ +   +  + KA +++     +     +L +PL VA+   AEL   ++ + +D+ SL + ++RLR +D ++ E
Sbjct:   36 LQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITHQ-EVKTMELKTSAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKSITMDGEQLLGGEGDLHGNRSSELHRAKKDIKSEVEERY-----LLNAEEIAQVKKAHGKTLTKMREGFEVSLSELRARCDARLASLEDDLELRRKVDIHEIEERKNLHINDLMKNHEKAFGQMKAYYNDITNDNLKLIRSLKDELVEMKKKAVANQKLMLDISHENKRLSEPLTVALTDVAELHAHLRGQEKDRMSLTNAKARLRVIDEQLSE 328          
BLAST of NO06G02440 vs. NCBI_GenBank
Match: OMJ66940.1 (hypothetical protein SteCoe_36040 [Stentor coeruleus])

HSP 1 Score: 69.3 bits (168), Expect = 3.100e-8
Identity = 67/297 (22.56%), Postives = 139/297 (46.80%), Query Frame = 0
Query:   68 MSMAGLQDAVGQLEQSTADARMSHSDAQAEQDAFHQEHTITIQSELRVATKALTEIQKQVEDLSTDHHLELRAYRDKLIALHYYHTLNLTSVASEREQLLGKEVEAHTSSVHMIQIKQQLGQSSSSSFGSGHRTRTGDEGDRLQDCLTNECIHLQQSLESNLLDIEGVCTTRFAQLQKNLELRHMKEMHGMEERADQHRQELVQQHEAVIKKLQNYYQNVVEEQSQRLQAREHTRITAEAKANSDRIRSKKLEEAIDQLRQPLAVAILREAELKKAVKVRARDKASLRHTRSRLRFL 365
            M +A LQ  +    Q   D ++  +  Q E+D   Q + +T +  +      +     ++E L  DH +E++ Y  K+  L Y H  +L  +  + ++ + +EV  H ++ +  +I ++  +   +     +  R   E +  Q  L      +++S +  ++ IE +   +   L++NLELR   E+H +EER ++HR EL+ +HE   + +++YY ++     ++++  +  +   E      +I    L++  D L+ PL  A     +L+  +     DK SL + +  L+ L
Sbjct:   29 MDIATLQREIEVWRQKHFDTKVLRNKNQNEKDLIKQFYDVT-KRNVEETGSLIRNKDTEMEKLEDDHRVEVKVYMQKIKHLEYDHQTSLKKLEIDSKEAVKEEVNYHYTTENKAKIYKKDLKKQINEMELSNVYRVQKEMEAYQMGLE----AIKKSNDDKIIGIEAIYKQKLQTLKENLELRLKVEIHEVEERKNKHRNELMVKHEKAFRNIKDYYNDITRGNLEKIRELKEEKKKLEQNQTDHKIAIDDLKKENDTLKNPLEDAKAELNKLEDRLTNYNLDKVSLFNAKKHLKTL 320          
BLAST of NO06G02440 vs. NCBI_GenBank
Match: OMJ94824.1 (hypothetical protein SteCoe_1843 [Stentor coeruleus])

HSP 1 Score: 69.3 bits (168), Expect = 3.100e-8
Identity = 67/305 (21.97%), Postives = 144/305 (47.21%), Query Frame = 0
Query:   68 MSMAGLQDAVGQLEQSTADARMSHSDAQAEQDAFHQEHTITIQSELRVATKALTEIQKQVEDLSTDHHLELRAYRDKLIALHYYHTLNLTSVASEREQLLGKEVEAHTSSVHMIQIKQQLGQSSSSSFGSGHRTRTGDEGDRLQDCLTNECIHLQQSLESNLLDIEGVCTTRFAQLQKNLELRHMKEMHGMEERADQHRQELVQQHEAVIKKLQNYYQNVVEEQSQRLQAREHTRITAEAKANSDRIRSKKLEEAIDQLRQPLAVAILREAELKKAVKVRARDKASLRHTRSRLRFLDAKIQEAE 373
            M +A LQ  +    Q   D ++  +  Q E+D   Q + +T +  +      +     ++E L  DH +E++ Y  K+  L Y H  +L  +  + ++ + +EV  H ++ +  +I ++  +   +     +  R   E +  Q  L      +++S +  ++ IE +   +   L++NLELR   E+H +EER ++HR EL+ +HE   + +++YY ++     ++++  +  +   E      +I    L++  D L+ PL  A     +L+  +     DK SL + +  L+ L  ++++ +
Sbjct:   29 MDIATLQREIEVWRQKHFDTKVLRNKNQNEKDLIKQFYDVT-KRNVEETGSLIRNKDTEMEKLEDDHRVEVKVYMQKIKHLEYDHQTSLKKLEIDSKEAVKEEVNYHYTTENKAKIYKKDLKKQINEMELSNVYRVQKEMEAYQMGLE----AIKKSNDDKIIGIEAIYKQKLQTLKENLELRLKVEIHEVEERKNKHRNELMVKHEKAFRNIKDYYNDITRGNLEKIRELKEEKKKLEQNQTDHKIAIDDLKKENDTLKNPLEDAKAELNKLEDRLTNYNLDKVSLFNAKKHLKTLLYQLEKCK 328          
BLAST of NO06G02440 vs. NCBI_GenBank
Match: XP_002766804.1 (Growth-arrest-specific protein, putative [Perkinsus marinus ATCC 50983] >EEQ99521.1 Growth-arrest-specific protein, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 66.2 bits (160), Expect = 2.600e-7
Identity = 66/312 (21.15%), Postives = 144/312 (46.15%), Query Frame = 0
Query:   58 DFSVNQQYENMSMAGLQDAVGQLEQSTADARMSHSDAQAEQDAFHQEHTITIQSELRVATKALTEIQKQVEDLSTDHHLELRAYRDKLIALHYYHTLNLTSVASEREQLLGKEVEAHTSSVHMIQIKQQLGQSSSSSFGSGHRTRTGDEGDRLQDCLTNECIHLQQSLESNLLDIEGVCTTRFAQLQKNLELRHMKEMHGMEERADQHRQELVQQHEAVIKKLQNYYQNVVEEQSQRLQAREHTRITAEAKANSDRIRSKKLEEAIDQLRQPLAVAILREAELKKAVKVRARDKASLRHTRSRLRFLDAKIQ 370
            D  + Q   +++   LQ+ +   E     A    +  + E+D  ++ +TIT + E+     A+   ++Q E +  +H ++++ +  K+ +L Y+ T     +  E E L+ +E + H   + ++    +  ++   S  S    R  +E   ++         L+++ E N   +E  C      L ++LE+R   E+H M ER + H  EL + H    ++++ YYQ++ ++  + +Q+ +        +  +++ R  +L      L +PLA      A+L + +K  + DK +L + R R   L+ +++
Sbjct:   20 DDIIPQDLLDLTEPQLQEKIESWEYRRNKAATERNYMEMERDLVNRFYTIT-KREIEQLEAAILCKERQTEVVEKEHRVKMKVHEHKVHSLVYHQTRENEDITKEAEALIMEEDDRH---IKLLTQWHEENEALKESLQSKKLARE-EEVKLMERGFAKSLEKLKETYECNQAQLEEECRDEVENLGRDLEVRRRVEIHEMRERKNLHMNELTENHNEAFEQIKGYYQDITQDNVKLIQSMKDEIALMRDREKANKERMTQLIAENKTLSEPLAEKEEERAKLMELLKNYSTDKIALENLRGRRAMLEKRLK 326          
The following BLAST results are available for this feature:
BLAST of NO06G02440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_009032527.14.400e-1523.82hypothetical protein AURANDRAFT_19143 [Aureococcus... [more]
CBN74708.16.400e-1424.08PF2 [Ectocarpus siliculosus][more]
OMJ66940.13.100e-822.56hypothetical protein SteCoe_36040 [Stentor coerule... [more]
OMJ94824.13.100e-821.97hypothetical protein SteCoe_1843 [Stentor coeruleu... [more]
XP_002766804.12.600e-721.15Growth-arrest-specific protein, putative [Perkinsu... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000216NSK000216Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02440.1NO06G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651520gene_6562Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02440.1NO06G02440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02440 ID=NO06G02440|Name=NO06G02440|organism=Nannochloropsis oceanica|type=gene|length=1212bp
ATGCCGTCCCCCGGCGGCCCCGGCAAAGCCAATGCAAGTGCCAATACCCG
TGCAGACAAGACGACTGCAGGAAAAGCTAAGACAAGCACTAAGAGAGGAG
CTACTGCTGCTGGTAAAAAAGGCTCGAAGAAGGAAGACAGCGAGACCAGC
ATCTCTTACGCTTCTCTTGAGGATTTTTCAGTCAACCAGCAATATGAAAA
TATGTCCATGGCAGGGCTGCAAGATGCCGTGGGACAACTAGAGCAGAGTA
CGGCTGATGCCCGAATGTCTCACTCAGATGCGCAGGCCGAACAAGACGCT
TTCCACCAGGAGCATACCATCACCATTCAATCCGAGCTGCGCGTGGCCAC
AAAAGCCTTGACAGAAATTCAAAAGCAAGTTGAAGATCTAAGCACAGACC
ACCACTTGGAGCTGCGGGCTTACCGAGACAAACTGATTGCCCTCCATTAC
TACCACACCCTGAACTTGACGTCCGTGGCTTCAGAACGTGAGCAGCTCCT
TGGCAAGGAAGTCGAAGCACATACTTCAAGTGTTCATATGATCCAGATAA
AGCAACAACTCGGTCAGTCTTCCTCCTCGTCTTTTGGCAGCGGTCACCGC
ACCAGAACAGGAGACGAAGGCGATAGGCTGCAGGACTGCCTTACCAACGA
ATGCATCCACTTACAACAGTCATTGGAAAGCAATCTCTTAGACATTGAAG
GCGTCTGTACAACCCGCTTTGCACAGCTACAGAAGAATCTGGAGCTTCGG
CACATGAAGGAGATGCATGGAATGGAAGAGCGCGCGGACCAGCACCGGCA
AGAATTGGTGCAGCAACACGAAGCAGTCATAAAAAAACTGCAGAACTACT
ATCAGAACGTGGTAGAAGAGCAGAGTCAACGACTCCAGGCCCGTGAGCAC
ACGAGGATAACAGCCGAGGCCAAGGCCAACAGCGACCGGATTCGAAGCAA
GAAATTGGAGGAGGCGATTGATCAGCTGCGACAGCCCTTGGCCGTCGCCA
TCTTGCGAGAGGCAGAGCTCAAGAAGGCAGTAAAGGTCCGTGCAAGGGAC
AAAGCCTCGTTGCGGCACACCCGCAGCCGGCTACGTTTTCTTGATGCCAA
GATTCAGGAGGCGGAGCGGATACAGCTCGTGCAACGCGCGGCGGTTGAGG
CGTTGGTAGAGGAAAAGGAGGAGGAGGAGGAGCGCGAGATCGAAGCAGTA
GTGCAGAAATAA
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protein sequence of NO06G02440.1

>NO06G02440.1-protein ID=NO06G02440.1-protein|Name=NO06G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MPSPGGPGKANASANTRADKTTAGKAKTSTKRGATAAGKKGSKKEDSETS
ISYASLEDFSVNQQYENMSMAGLQDAVGQLEQSTADARMSHSDAQAEQDA
FHQEHTITIQSELRVATKALTEIQKQVEDLSTDHHLELRAYRDKLIALHY
YHTLNLTSVASEREQLLGKEVEAHTSSVHMIQIKQQLGQSSSSSFGSGHR
TRTGDEGDRLQDCLTNECIHLQQSLESNLLDIEGVCTTRFAQLQKNLELR
HMKEMHGMEERADQHRQELVQQHEAVIKKLQNYYQNVVEEQSQRLQAREH
TRITAEAKANSDRIRSKKLEEAIDQLRQPLAVAILREAELKKAVKVRARD
KASLRHTRSRLRFLDAKIQEAERIQLVQRAAVEALVEEKEEEEEREIEAV
VQK*
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Synonyms
Publications