NO06G02430, NO06G02430 (gene) Nannochloropsis oceanica

Overview
NameNO06G02430
Unique NameNO06G02430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1155
Alignment locationchr6:690146..691300 +

Link to JBrowse

Properties
Property NameValue
DescriptionDna-directed rna polymerases i and iii subunit rpac2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:690146..691300 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0016740transferase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR009025RBP11-like_dimer
Homology
[Close]
BLAST of NO06G02430 vs. NCBI_GenBank
Match: EWM26262.1 (dna-directed rna polymerases i and iii subunit rpac2 [Nannochloropsis gaditana])

HSP 1 Score: 207.6 bits (527), Expect = 2.200e-50
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 0 
Query:    1 MSVNEHRPPPADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREKDAGAE 118
            MSVNEHRP PA+KKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKET FCGYSVPHPSEPKMN+RLQTS +K A++VLKDGLHE+VEICDLFDFTLD AI+ YE ++ D+  E
Sbjct:   37 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADSTDE 153
[Close]
BLAST of NO06G02430 vs. NCBI_GenBank
Match: CBJ49085.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.3 bits (329), Expect = 2.000e-27
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 0 
Query:    1 MSVNEHRPPPADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEARE 112
            M+VNEHRP  AD KF+  E +   S TF+FGDEDHTLGN+LRHVLM  KE  FCGYSVPHPSEPKMN+RLQT T + A+E+LK+GL +L ++C++ +  ++  I   E  E
Sbjct:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQT-TGRPALELLKEGLRDLRDLCNILEERVEREIPDAEDEE 110
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BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_024574539.1 (dna-directed rna polymerases i and iii subunit rpac2-like [Plasmopara halstedii] >CEG38170.1 dna-directed rna polymerases i and iii subunit rpac2-like [Plasmopara halstedii])

HSP 1 Score: 99.4 bits (246), Expect = 8.600e-18
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0 
Query:   11 ADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEI 93
            A KK +    T E+S+T+VF DEDHTLGN+LR+VLM   +  FCGY++PHPSEPKM++RLQT     A EVL+ GL +L +I
Sbjct:    4 AAKKLDVFSTTSEYSKTYVFHDEDHTLGNALRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGAPADEVLRSGLTDLRKI 85
[Close]
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_009041822.1 (hypothetical protein AURANDRAFT_17769, partial [Aureococcus anophagefferens] >EGB03493.1 hypothetical protein AURANDRAFT_17769, partial [Aureococcus anophagefferens])

HSP 1 Score: 98.2 bits (243), Expect = 1.900e-17
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 0 
Query:   27 TFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICD 95
            TFVF DEDHTLGN+LRHVLM +++T F GYSVPHPSEP MNVRLQT T + A+ V+ DGL +L  ICD
Sbjct:    1 TFVFRDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQT-TGRPALAVMDDGLAQLSSICD 67
[Close]
BLAST of NO06G02430 vs. NCBI_GenBank
Match: EFJ08343.1 (hypothetical protein SELMODRAFT_49918, partial [Selaginella moellendorffii])

HSP 1 Score: 97.8 bits (242), Expect = 2.500e-17
Identity = 49/89 (55.06%), Postives = 60/89 (67.42%), Query Frame = 0 
Query:   24 HSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREK 113
            HS TF F  EDHTLGNSLR +L       FCGYSVPHPSE K+NVR+QT T   A EV KD L ++V IC+    T+DSA+  ++A E+
Sbjct:    2 HSSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQT-TGAPAKEVFKDALLDMVAICEHVSTTMDSAVERFKANEQ 89
[Close]
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_001008255.1 (DNA-directed RNA polymerase I and III 14 kDa protein [Tetrahymena thermophila SB210] >EAR88010.1 DNA-directed RNA polymerase I and III 14 kDa protein (macronuclear) [Tetrahymena thermophila SB210])

HSP 1 Score: 97.8 bits (242), Expect = 2.500e-17
Identity = 45/91 (49.45%), Postives = 65/91 (71.43%), Query Frame = 0 
Query:   22 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREK 113
            D    T+ F DEDHTLGN++R++L+ RK+  FCGY++PHPSE KMN+RLQT   K + EVLK+GL  L  +CD+ +   D+A+  +E ++K
Sbjct:   57 DRTCATYTFYDEDHTLGNTVRYMLVKRKDVEFCGYTIPHPSENKMNLRLQT-IKKNSNEVLKEGLDSLAGLCDVLNDKFDAAMKKFEKQQK 146
[Close]
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_002990466.2 (DNA-directed RNA polymerases I and III subunit RPAC2 isoform X2 [Selaginella moellendorffii])

HSP 1 Score: 97.8 bits (242), Expect = 2.500e-17
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 0 
Query:   22 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREK 113
            + HS TF F  EDHTLGNSLR +L       FCGYSVPHPSE K+NVR+QT T   A EV KD L ++V IC+    T+DSA+  ++A E+
Sbjct:    7 ESHSSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQT-TGAPAKEVFKDALLDMVAICEHVSTTMDSAVERFKANEQ 96
[Close]
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_001456466.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAK89069.1 unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 96.7 bits (239), Expect = 5.600e-17
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 0 
Query:   11 ADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAI 105
            A K  E  E++D  + TFVF DEDHTLGNSLR++L  +    FCGYS+PHPSE KMN+RLQT  ++T  +++ DGL  L +ICD+ +     A+
Sbjct:   27 ATKGMEIQEHSDPFNGTFVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENKMNMRLQT-VNETKEKIMNDGLKCLSQICDIIEDKFKKAL 119
[Close]
BLAST of NO06G02430 vs. NCBI_GenBank
Match: EFJ15283.1 (hypothetical protein SELMODRAFT_49652, partial [Selaginella moellendorffii])

HSP 1 Score: 96.7 bits (239), Expect = 5.600e-17
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 0 
Query:   24 HSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREK 113
            HS TF F  EDHTLGNSLR +L       FCGYSVPHPSE K+NVR+QT T     EV KD L ++V IC+    T+DSA+  ++A E+
Sbjct:    2 HSSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQT-TGAPGKEVFKDALLDMVAICEHVSTTMDSAVGRFKANEQ 89
[Close]
BLAST of NO06G02430 vs. NCBI_GenBank
Match: CCI42655.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 96.7 bits (239), Expect = 5.600e-17
Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = 0 
Query:   11 ADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEI 93
            A KK +    T E S+T+VF DEDHTLGN+LR++LM   +  FCGY++PHPSEPKM++RLQT    ++ E+L++GL +L ++
Sbjct:    4 APKKLDVYSTTSEASKTYVFHDEDHTLGNALRYILMRNPQVEFCGYTIPHPSEPKMHLRLQTQKDVSSDEMLREGLQDLYKL 85
The following BLAST results are available for this feature:
BLAST of NO06G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26262.12.200e-5082.91dna-directed rna polymerases i and iii subunit rpa... [more]
CBJ49085.12.000e-2757.66conserved unknown protein [Ectocarpus siliculosus][more]
XP_024574539.18.600e-1856.10dna-directed rna polymerases i and iii subunit rpa... [more]
XP_009041822.11.900e-1769.12hypothetical protein AURANDRAFT_17769, partial [Au... [more]
EFJ08343.12.500e-1755.06hypothetical protein SELMODRAFT_49918, partial [Se... [more]
XP_001008255.12.500e-1749.45DNA-directed RNA polymerase I and III 14 kDa prote... [more]
XP_002990466.22.500e-1753.85DNA-directed RNA polymerases I and III subunit RPA... [more]
XP_001456466.15.600e-1750.00hypothetical protein [Paramecium tetraurelia strai... [more]
EFJ15283.15.600e-1753.93hypothetical protein SELMODRAFT_49652, partial [Se... [more]
CCI42655.15.600e-1751.22unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000218NSK000218Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02430.1NO06G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100145g2gene4267Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02430.1NO06G02430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02430 ID=NO06G02430|Name=NO06G02430|organism=Nannochloropsis oceanica|type=gene|length=1155bp
TGGGCCCATATAATAAGACATGTTACCTTCATAAGCACATAAATAGGAAC
ATCTTATGCTACTCTGTTCCTTTATCTCCTCCACTCACACCTGTCGTTTG
CTCACCGACTTTGGTCCTTGTGCAATTGGCAGGAGATGAGGAGGCCATCC
TCATTACCCCCCCATCGCATCGTGCCCGAGTAGTAGGGGAACCCGCGCCC
CATCCGATGACATAGATAATGTGTTGGCGCATGGATCAATGCGGACGCAT
CATGAAACGCGGCCGAATCTAACTCACTCTCTTCCTTTCCTATCCTGCCA
ACTCACACAGGCGGGCGGCTGCACAAGGACGACGAACAAAGCAAGAGGGG
AAGTTAGCATACGAAGATATCTCGTCCATCAATCACAGCCGCCTCTGAAG
CATGTCTGTCAACGAGCATCGCCCACCACCCGCCGACAAGAAGTTCGAAT
CGgtgcgtattcgagaggctgtagctgtcttatttatattgtcgcacgga
aaaatctcgtgtaatgtttgaggcagcacctatagggcaagcgcgctcac
cctcatttttttttcctttcccgcaccatctacctttcaccaccgcagCT
CGAGTACACGGATGAGCACTCTCGGACCTTTGTTTTTGGTGATGAGGATC
ACACACTGGGCAATTCCTTACGGCATGTGCTGATGGGACGGAAGGAGACG
ACTTTTTGCGGCTACAGTGTGCCCCACCCCTCCGAGCCTAAAATGAACGT
TCGGCTTCAGACGTCCACGAGCAAAACCGCGGTGGAAGTGCTGAAAGACG
GGCTGCACGAATTGGTGGAGATTTGCGATTTGTTTGATTTCACATTGGAT
AGTGCCATTGCAGGGTACGAGGCACGCGAGAAGGATGCGGGGGCGGAGAG
TAAAGGACAGTCCAAATCGGTCTGAGCGACAGAAGAGAAGATAGAGGCAG
GAGGAAAGCCAGGGGAGATGTATAGTAGACCAAAAGAGAGATCTATTGAA
AGTATGAGTACAGGAAGAAAAGAGAGCAGTCAATTTAATTTGAGAGCGGT
CTATTTATAAGTGTTTCTTGCGTTTTGGGGATTTGATCACCTCACTACAC
TTAGGATTTCATTCTCCCTCTCACTATTTCCGATGTCAATCGAGCACGAG
TGAAC
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protein sequence of NO06G02430.1

>NO06G02430.1-protein ID=NO06G02430.1-protein|Name=NO06G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MSVNEHRPPPADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKE
TTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTL
DSAIAGYEAREKDAGAESKGQSKSV*
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Synonyms
Publications