NO06G02400, NO06G02400 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G02400 vs. NCBI_GenBank
Match: EWM26249.1 (holliday junction resolvase [Nannochloropsis gaditana]) HSP 1 Score: 202.2 bits (513), Expect = 1.700e-48 Identity = 115/234 (49.15%), Postives = 141/234 (60.26%), Query Frame = 0 Query: 3 LPHPSSAATRRLIKLLRPEALAKYLHHVRSSNPLPSPQLPHAVTGSNSTVCLLGLDVGGRKIGVSIADWTLSIARPLTRIDRP-----XXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLERHVRPSIA 232 +P+ SS + RL+K LRPEALA YL HVRS T + ++ LLGLDVG K+GVSIAD TL++A+PL RIDRP +FPA G+ L+ LI+ H AAGLVVGYPLTLWEG+ +RC+EV+ FM VY+ES +E+ VPF VWDERMTTQ+AREALRG +ED VAATI+LQ YLERH+RP IA Sbjct: 19 MPYLSSPHSTRLVKFLRPEALAAYLRHVRS-------------TSAGASAVLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRG----EEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPDIA 235
BLAST of NO06G02400 vs. NCBI_GenBank
Match: WP_009828459.1 (Holliday junction resolvase RuvX [Rhodobacteraceae bacterium HTCC2083] >EDZ41591.1 conserved hypothetical protein TIGR00250 [Rhodobacteraceae bacterium HTCC2083]) HSP 1 Score: 71.2 bits (173), Expect = 4.600e-9 Identity = 56/180 (31.11%), Postives = 76/180 (42.22%), Query Frame = 0 Query: 54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLER--HVRPSIA 232 L+GLD+G + IGVS++D LS+A PL I R L ++IE G+V+G P + +G EG RCQ F + R+S +P T WDER++T A AL EV D VAA +LQ L+R H+R A Sbjct: 19 LVGLDLGTKTIGVSVSDGLLSVASPLETIKRTKYTAD------------------AARLEQIIEARYIGGIVLGLPFNM-DGSEGPRCQSTRAFARNLARQSE----LPITYWDERLSTVAAERAL----------------LAADASRRRRAEVIDNVAAAYILQGALDRLSHIRREAA 159
BLAST of NO06G02400 vs. NCBI_GenBank
Match: CBN78349.1 (Holliday junction resolvase-like protein [Ectocarpus siliculosus]) HSP 1 Score: 70.9 bits (172), Expect = 6.000e-9 Identity = 68/234 (29.06%), Postives = 101/234 (43.16%), Query Frame = 0 Query: 4 PHPSSAATRRLIKLLRPEALAK---YLHHVRSSNPLP-SPQLPHAVTGS----------NSTVCLLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLE 224 PH SAA R + A A Y H NP+P LP +T + N L+GLDV GV+++D T ++A PLTR+ R PA +L +++E +A GLVVG+PL+ GR +C V+ F+ ++ +V +P T++DERMT+ AR L+ E ED AA ++LQ +L+ Sbjct: 36 PHRPSAAPARRLTTTGGAAGAPPRGYSRHRHPRNPVPGKDDLPTILTAAGMVKLCGLPGNRGSPLVGLDVAPSNFGVAVSDETKTLAFPLTRVPRRQSTKKLD------------PALVIGKLREIVEDCSACGLVVGWPLSK-SGRAEGQCLMVLQFLRQLHLRG--KVDIPVTLFDERMTSVEARGILK-----------------DDGLGRKIAEREDETAAMVILQGFLD 237
BLAST of NO06G02400 vs. NCBI_GenBank
Match: OLC02289.1 (hypothetical protein AUH45_09215 [Gemmatimonadetes bacterium 13_1_40CM_69_22] >OLC75324.1 hypothetical protein AUH78_09265 [Gemmatimonadetes bacterium 13_1_40CM_4_69_8]) HSP 1 Score: 68.9 bits (167), Expect = 2.300e-8 Identity = 50/170 (29.41%), Postives = 79/170 (46.47%), Query Frame = 0 Query: 54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLE 224 LL +D G R+IG+S++D + +A+PLT + R FP ++L L+E+H AG++VG PL +G EG + + + R++ + P +WDERMTT A +A+R DA+AAT++LQ YL+ Sbjct: 7 LLAVDWGERRIGLSLSDESQRLAQPLTTLTR--------------RAGKRFPM---RQLRTLLEQHAVAGVIVGLPLD-EQGEEGAPARAARELAAAIGRQTGR----PVELWDERMTTARALQAVREMGGSARGRKGDV----------------DALAATLLLQHYLD 138
BLAST of NO06G02400 vs. NCBI_GenBank
Match: WP_006562377.1 (Holliday junction resolvase RuvX [Oscillochloris trichoides] >EFO80357.1 Holliday junction resolvase YqgF [Oscillochloris trichoides DG-6]) HSP 1 Score: 68.6 bits (166), Expect = 3.000e-8 Identity = 54/174 (31.03%), Postives = 80/174 (45.98%), Query Frame = 0 Query: 54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLERHVR 228 LLGLDVG R+IGV+++D +A PLT I+ + +L+ H G+VVG PLTL G G + ++ +F +E ++V +P ++DER TT VA + LR + D VAA+I+LQDYL+ H+R Sbjct: 6 LLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITM------------------IARLVREHEVQGIVVGLPLTL-RGEIGPQAEQTRSFA----QELERQVGLPVMLFDERYTTTVAEQLLR----------------EMGVKPEKRKQQIDQVAASIILQDYLD-HIR 139
BLAST of NO06G02400 vs. NCBI_GenBank
Match: WP_092059682.1 (Holliday junction resolvase RuvX [Poseidonocella pacifica] >SFA69930.1 putative holliday junction resolvase [Poseidonocella pacifica]) HSP 1 Score: 68.6 bits (166), Expect = 3.000e-8 Identity = 57/179 (31.84%), Postives = 78/179 (43.58%), Query Frame = 0 Query: 54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIE---RHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLE--RHVR 228 L GLD G + IGV+++D LS+A PL I R FG + +L+E + + AGLV+G P + +G EG RCQ F R S+ +P T WDER++T A AL EV D VAA+ +LQ L+ RH+R Sbjct: 19 LAGLDFGEKTIGVAVSDRLLSVATPLETIRRKK---------------------FGMDAQRLLELCAKRDIAGLVLGLPRNM-DGSEGARCQSTRAFA----RNLSRVTELPITFWDERLSTVAAERAL----------------LEADTSRKRRAEVIDHVAASYILQGALDRLRHLR 155
BLAST of NO06G02400 vs. NCBI_GenBank
Match: PKQ04813.1 (Holliday junction resolvase RuvX [Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11]) HSP 1 Score: 68.2 bits (165), Expect = 3.900e-8 Identity = 44/126 (34.92%), Postives = 60/126 (47.62%), Query Frame = 0 Query: 54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREAL 180 L+G+D+G + IG++++D +LSIA PL I R A L L H+A GLVVG PL + +G EG RCQ F+ R + +P WDERM+TQ L Sbjct: 47 LIGVDLGSKTIGLALSDVSLSIASPLETIKRTKF------------------AADADRLLALAAEHDAGGLVVGLPLNM-DGTEGPRCQSTRAFI----RNLEKLTALPIAFWDERMSTQAVTRTL 149
BLAST of NO06G02400 vs. NCBI_GenBank
Match: OUT74401.1 (Holliday junction resolvase RuvX [Rhizobiales bacterium TMED25]) HSP 1 Score: 67.8 bits (164), Expect = 5.100e-8 Identity = 49/171 (28.65%), Postives = 76/171 (44.44%), Query Frame = 0 Query: 54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLER 225 LLGLD+G + IG+S++D + IA P I+R +++ K+ N +GL++GYPL + EG R Q ++F +E ++ LVP +WDER++T A + L EV D +AAT +LQ L+R Sbjct: 18 LLGLDLGTKTIGISLSDSSRLIASPFDTINRKKTTLDI------------------EKITKICTEFNISGLILGYPLNM-NATEGPRAQSTISFA----QELEKKNLVPIILWDERLSTSAAEKIL----------------ITADLTRKKRKEVIDKMAATYILQGALDR 149
BLAST of NO06G02400 vs. NCBI_GenBank
Match: WP_008474451.1 (Holliday junction resolvase RuvX [Nitrolancea hollandica] >CCF82333.1 putative Holliday junction resolvase [Nitrolancea hollandica Lb]) HSP 1 Score: 67.0 bits (162), Expect = 8.700e-8 Identity = 50/173 (28.90%), Postives = 73/173 (42.20%), Query Frame = 0 Query: 55 LGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREALRGXXXXXXXXXXXXXXXXXXXXXXXXXEVEDAVAATIMLQDYLERHVR 228 +GLD+G R++GV+++D IA P+ +D L IERH+ ++VG P T GREG + + V F ++ + V P T WDER+TT +A +AL E DAVAA ++LQ YL+ R Sbjct: 1 MGLDIGERRVGVAVSDELHVIASPVESVDLKRGGV--------------------DALLAAIERHSPERIIVGLP-TSMSGREGPQAKAVREFA----KQLGEAVQTPITFWDERLTTSIAEQAL----------------ITSGRRRRERKERVDAVAAALILQSYLDSRRR 132
BLAST of NO06G02400 vs. NCBI_GenBank
Match: PCJ42019.1 (Holliday junction resolvase RuvX [Alphaproteobacteria bacterium]) HSP 1 Score: 66.6 bits (161), Expect = 1.100e-7 Identity = 41/126 (32.54%), Postives = 61/126 (48.41%), Query Frame = 0 Query: 54 LLGLDVGGRKIGVSIADWTLSIARPLTRIDRPXXXXXXXXXXXXXXXXXSFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSCVYRESSQEVLVPFTVWDERMTTQVAREAL 180 LLGLD+G + IGV+++D +IA P+ I R X L +IE N GL++G+PL + +G EG RCQ F R S+++ +P +WDER++T L Sbjct: 18 LLGLDLGSKTIGVALSDVMRNIATPMETIKRTKFTXD------------------AARLFTIIEEQNVGGLILGFPLNM-DGSEGPRCQSTRQFA----RNISEKIDLPIALWDERLSTVAVTRTL 120 The following BLAST results are available for this feature:
BLAST of NO06G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G02400 ID=NO06G02400|Name=NO06G02400|organism=Nannochloropsis oceanica|type=gene|length=793bpback to top protein sequence of NO06G02400.1 >NO06G02400.1-protein ID=NO06G02400.1-protein|Name=NO06G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bpback to top Synonyms
Publications
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