NO06G02370, NO06G02370 (gene) Nannochloropsis oceanica

Overview
NameNO06G02370
Unique NameNO06G02370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length972
Alignment locationchr6:679461..680432 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:679461..680432 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0017009protein-phycocyanobilin linkage
GO:0017009protein-phycocyanobilin linkage
Vocabulary: Molecular Function
TermDefinition
GO:0016829lyase activity
GO:0016829lyase activity
Vocabulary: INTERPRO
TermDefinition
IPR010404CpcT/CpeT
Homology
BLAST of NO06G02370 vs. NCBI_GenBank
Match: EWM26242.1 (hypothetical protein Naga_100025g64 [Nannochloropsis gaditana])

HSP 1 Score: 273.1 bits (697), Expect = 1.000e-69
Identity = 151/285 (52.98%), Postives = 183/285 (64.21%), Query Frame = 0
Query:    1 MPRFNLLPP--ASLLMLLLLLGPSPISQAFPISGYFSPRQRAFLWRAQAGAECFDDDNGSLPLFRLYFQGEFDNAAQVVSERAQGIEAGPAGGHEQIHCILTPLDLPAGSFGGDAQFFLGATYYFDGRPEAVFRCRVYSFHXXXXXXXXXXXXXXXXXXXXXXXXFLEMRLHRFTPEFEGMMRQNKYDLNLLPQTQVELAEVVEELEGCSVIWSVSNFKTSDEED-------------DGVSFRGVMRDGFCLVQSQRDAGIQLKIEDDLLLTREMLCVNDRGTD 271
            +PR NLLPP  A L +LLLL  P   ++AF +       ++A  WR Q GA   +D +G L  FR +FQGEFDNA QV SERAQGIEAG  GGHEQIHC+L PL+L  G  G D+ F +GATYYFDGRP+AVFRCRVYSFH    X                   F EMRLHRFTP+FE +MR+N YD+ LL +   +LA+VVEEL GCS++WSV   +    +D              G  F+G MR+GFCLV SQR+A ++LKIEDDLLLT +ML VNDRGTD
Sbjct:   32 LPRHNLLPPLAAVLCLLLLLSRPDATTEAFVLH-----LRQAKQWRIQGGATTTEDGDGLLSHFRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHCVLEPLELAHGVLGNDSLFCVGATYYFDGRPDAVFRCRVYSFH-PPPXSQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRKNNYDMRLLQEPCNQLAQVVEELTGCSILWSVCTERIVIGQDIVGNGEGERPEVVHGARFQGEMREGFCLVDSQREANVRLKIEDDLLLTADMLSVNDRGTD 310          
BLAST of NO06G02370 vs. NCBI_GenBank
Match: EJK75900.1 (hypothetical protein THAOC_02359 [Thalassiosira oceanica])

HSP 1 Score: 90.9 bits (224), Expect = 7.300e-15
Identity = 82/300 (27.33%), Postives = 122/300 (40.67%), Query Frame = 0
Query:   25 SQAFPISGYFSPRQRAFLWRAQAGAECFDDDNGSLPLFRLY---FQGEFDNAAQVVSERAQGIEAGPAGGHEQIHCILTPLDLPAGSFGGDAQ------FFLGATYYFDGRPEAVFRCRVYSFHXXXXXXXXXXXXXXXXXXXXXXXXFLEMRLHRFTPEFEGMMR---------------------QNKYDLNLLPQTQVELAEVVEELEGCSVIWS-----------VSNFKTSDEEDDGVSF-------------RGVMRDGFCLVQSQRDAGIQLKIEDDLLLTREMLCVNDRGTD 271
            S+A P S   + RQR+ + R  A     D D  S   FR     FQG+FDN  QVV +R  G+  G  GGHE IHC L    +P   FG DA+       ++ A +YF+G P+ +FR R Y                            + M+L+  +P  E  +R                     + K+  +++P +Q  +  +V  L+GC V+W            + N   SDE +D  SF              G + D   ++  QR     + I+D+L L  +   +NDRG D
Sbjct:   42 SRASPHSNSKTARQRSTIVRTIARE--VDCDKSSGEYFRRLTSTFQGDFDNYNQVVLDRQHGLTPGAGGGHEHIHCTL----VPCPDFGDDAEGDTRRSRWILAAFYFNGNPQQIFRFRAYQL------------WAPDHDGMDDGSAVVRMKLNTLSPILEQALRKRSEEPCSWWRTAWKVWSGEDKKKFHEDIIPWSQF-IPSLVSPLQGCDVLWEEDWDAAKHSYLLDNAYNSDESNDITSFCDTSFHATMEAGSSGAIVDSISMIPGQR-----ILIKDELSLWEDKFWINDRGYD 317          
BLAST of NO06G02370 vs. NCBI_GenBank
Match: OSX78305.1 (hypothetical protein BU14_0112s0004, partial [Porphyra umbilicalis])

HSP 1 Score: 85.1 bits (209), Expect = 4.000e-13
Identity = 56/150 (37.33%), Postives = 68/150 (45.33%), Query Frame = 0
Query:   62 FRLYFQGEFDNAAQVVSERAQGIEAGPAGGHEQIHCILTPLDLPAGSFGGDAQFFLGATYYFDGRPEAVFRCRVYSFHXXXXXXXXXXXXXXXXXXXXXXXXFLEMRLHRFTPEFEGMMRQNKYDLNLLPQTQVELAEVVEELEGCSVIW 212
            F  +F G+FDN  QVV ERA G+     GGHE IHC LT L        GD   F  A YYF+G P  VFR R+Y                            LEMR++R   E E  +R   YD+  L  T    A+V + L+GC V W
Sbjct:   14 FLAWFAGDFDNHEQVVEERAAGLSPREGGGHEHIHCTLTSL--------GDGWLF--AKYYFNGDPSVVFRSRLY----------------RVLPVVESPVGLLEMRIYRLFAEAEASLRATGYDVRGLSFTD---ADVYDWLQGCEVYW 134          
BLAST of NO06G02370 vs. NCBI_GenBank
Match: OEU19745.1 (hypothetical protein FRACYDRAFT_235801 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 82.0 bits (201), Expect = 3.400e-12
Identity = 63/238 (26.47%), Postives = 93/238 (39.08%), Query Frame = 0
Query:   65 YFQGEFDNAAQVVSERAQGIEAGPAGGHEQIHCILTPLDLPAGSFGGDAQFFLGATYYFDGRPEAVFRCRVYSFHXXXXXXXXXXXXXXXXXXXXXXXXFLEMRLHRFTPEFEGMMRQNKYDLNLLPQ----------------------TQVELAEVVEELEGCSVIWS----------VSNFKTSDEEDDGVSFRGVMRDGFCLVQSQRDAGIQLKIEDDLLLTREMLCVNDRGTD 271
            +FQG+FDN AQVV +R  G+     GGHE  HC L P+           +    A ++FDG P  +FR R Y                            +EMRL+   PE E +++ +  D    P                             + V  L  C ++WS          +S+    D+E + +S   VM  G  +V S    G+Q++I D L L + +  +NDRG D
Sbjct:   99 WFQGDFDNYAQVVEDRKNGLLPREGGGHEHFHCTLVPV----------TESTRLAAFFFDGNPNRIFRFRYYEL--------LTPTIINDVDHQHSNNVTVEMRLNTLHPELEQLLKSHSTDPLSWPDIFKNFQHEGVSSXXXXXXXXXXXXXXXNQKVIPLSKCEIVWSFDKDPIQHSYISSDDGKDDEAENMSLHAVMVHGEQVVNSTIVPGMQIRILDQLSLYQHVFYINDRGFD 318          
BLAST of NO06G02370 vs. NCBI_GenBank
Match: XP_002183185.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45403.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.4 bits (189), Expect = 8.300e-11
Identity = 67/212 (31.60%), Postives = 91/212 (42.92%), Query Frame = 0
Query:   66 FQGEFDNAAQVVSERAQGIEAGPAGGHEQIHCILTPLDLPAGSFGGDAQFFLGATYYFDGRPEAVFRCRVYSFHXXXXXXXXXXXXXXXXXXXXXXXXFLEMRLHRFTPEFEGMMRQNKYDLNLLPQTQVELAEV--VEELEGCSVIWS-----VSNFKTSDEEDDGVSFRGVMRDGFCLVQSQRDAGIQLKIEDDLLLTREMLCVNDRGTD 271
            FQG+FDN  QV+ +R +G+     GGHE IHC L P+   A            A +YFDG P A+FR R Y                            ++  LH   PE E  +R+   D +  P    E      V+ L  C V WS     V +    DE  +G+    VM  G  LV+SQ   G ++ I+D L L  + L ++DRG D
Sbjct:   70 FQGDFDNYNQVIHDRKKGLLPREGGGHEHIHCSLVPVSETARL----------AAFYFDGVPGAIFRFRFYDL-------------------IPVDESTIDTVLHTLHPELERRLRRCP-DPSSWPLFFEEFGVKGRVQLLPKCDVRWSWVLDPVQHDYALDEGPNGL--HAVMVHGEALVESQMMPGQKILIKDQLSLWPDELWIHDRGFD 249          
BLAST of NO06G02370 vs. NCBI_GenBank
Match: KOO29974.1 (hypothetical protein Ctob_013023 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 72.0 bits (175), Expect = 3.500e-9
Identity = 64/224 (28.57%), Postives = 94/224 (41.96%), Query Frame = 0
Query:   59 LPLFRLYFQGEFDNAAQVVSERAQGIEAGPAGGHEQIHCILTPL---DLPAGSFGGDAQFFLGATYYFDGRPEAVFRCRVYSFHXXXXXXXXXXXXXXXXXXXXXXXXFLEMRLHRFTPEFEGMMRQNKYDLNLLPQTQVELAEVVEELEGCSVIWSVS---NFKTSDEEDD------GVSFRGVMRDGFCLVQSQRDAGIQLKIEDDLLLTREMLCVNDRGTD 271
            L  F    +G FDN  QV +E+  G+     GGHE IHC L P+   D P G        ++ A+YYF+G P+AVFR R+Y+                               L R  P+F   +R   Y + L    ++     + +     V WS +   +      E D      G  F G MR     + S+R +G  +++ DD+ L ++ L VNDR TD
Sbjct:   29 LSRFXXXXRGHFDNHEQVETEKLAGLTPREGGGHEHIHCSLQPVTLHDRPQGQ-------YVLASYYFNGDPDAVFRERLYAID----------------------------ELPR-DPQFGTCVRMRIYKMRLSTAERLRAGMTLND-----VAWSAAEDLHASLHVPEADVFWRWCGERFEGSMRTQSIEIISER-SGRAIRVRDDVALWQDALWVNDRATD 210          
The following BLAST results are available for this feature:
BLAST of NO06G02370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM26242.11.000e-6952.98hypothetical protein Naga_100025g64 [Nannochlorops... [more]
EJK75900.17.300e-1527.33hypothetical protein THAOC_02359 [Thalassiosira oc... [more]
OSX78305.14.000e-1337.33hypothetical protein BU14_0112s0004, partial [Porp... [more]
OEU19745.13.400e-1226.47hypothetical protein FRACYDRAFT_235801 [Fragilario... [more]
XP_002183185.18.300e-1131.60predicted protein [Phaeodactylum tricornutum CCAP ... [more]
KOO29974.13.500e-928.57hypothetical protein Ctob_013023 [Chrysochromulina... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000224NSK000224Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02370.1NO06G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597331gene_6555Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g64gene4274Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02370.1NO06G02370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02370 ID=NO06G02370|Name=NO06G02370|organism=Nannochloropsis oceanica|type=gene|length=972bp
ATGCCTCGCTTCAACCTCCTGCCTCCCGCAAGTCTCCTGATGCTCCTCCT
CCTGTTGGGACCATCACCCATATCCCAAGCCTTCCCGATCAGCGGGTACT
TTTCACCAAGACAACGCGCGTTTCTATGGCGTGCTCAAGCCGGGGCGGAA
TGCTTTGACGATGATAATGGCTCTCTTCCTTTATTCCGCTTGTACTTCCA
AGGCGAGTTCGACAACGCGGCGCAGGTGGTGTCGGAGCGAGCACAAGGCA
TAGAGGCGGGACCTGCCGGTGGACATGAACAGATTCATTGCATCTTGACG
CCTCTAGATCTACCCGCAGGAAGTTTTGGTGGTGATGCGCAATTTTTCTT
GGGCGCCACCTACTATTTTGATGGCCGACCCGAGGCTGTCTTCCGCTGCC
GTGTCTACAGCTTCCACCCTCCCCCTCCGGCCGCCGACGACGATGAAGAT
GAGGAGTGCGGGGCATCATTTTTTTTACCTCCTCCGCCTTTTCTGGAAAT
GCGGCTACATCGATTCACCCCGGAATTCGAGGGTATGATGAGGCAGAATA
AATATGACTTGAATTTGTTGCCTCAGACACAGGTAGAGCTGGCAGAGGTG
GTGGAGGAATTGGAAGGTTGTAGCGTTATTTGGAGCGTCTCCAACTTTAA
GACAAGTGACGAAGAAGATGATGGGGTGAGTTTTCGAGGGGTGATGCGCG
ACGGTTTTTGTTTGGTTCAGTCGCAGAGAGATGCGGGTATTCAGTTGAAG
ATTGAGGATGATTTGCTGTTGACGAGGGAAATGTTGTGTGTGAACGACCG
CGGAACAGATTGTGTGACAGgtaagatcatatatggtaattatagaagct
tgccttacagaatggagcgacgacaacgaccgtaggatggtacagATGAA
GAACAACGCGAAGAAGAAGACGAGGAGGATAAGGAGACGGAGGATGAGGG
GGGGGAGGAGTTAGAAGGATAA
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protein sequence of NO06G02370.1

>NO06G02370.1-protein ID=NO06G02370.1-protein|Name=NO06G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MPRFNLLPPASLLMLLLLLGPSPISQAFPISGYFSPRQRAFLWRAQAGAE
CFDDDNGSLPLFRLYFQGEFDNAAQVVSERAQGIEAGPAGGHEQIHCILT
PLDLPAGSFGGDAQFFLGATYYFDGRPEAVFRCRVYSFHPPPPAADDDED
EECGASFFLPPPPFLEMRLHRFTPEFEGMMRQNKYDLNLLPQTQVELAEV
VEELEGCSVIWSVSNFKTSDEEDDGVSFRGVMRDGFCLVQSQRDAGIQLK
IEDDLLLTREMLCVNDRGTDCVTDEEQREEEDEEDKETEDEGGEELEG*
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Synonyms
Publications