NO06G02350, NO06G02350 (gene) Nannochloropsis oceanica

Overview
NameNO06G02350
Unique NameNO06G02350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1269
Alignment locationchr6:677059..678327 +

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Properties
Property NameValue
DescriptionVesicle transport protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:677059..678327 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR011691Vesicle_transpt_SFT2
IPR007305Vesicle_transpt_Got1/SFT2
Homology
[Close]
BLAST of NO06G02350 vs. NCBI_GenBank
Match: EWM26226.1 (vesicle transport protein sft2a [Nannochloropsis gaditana])

HSP 1 Score: 315.1 bits (806), Expect = 1.400e-82
Identity = 160/171 (93.57%), Postives = 165/171 (96.49%), Query Frame = 0 
Query:    1 MKAIQSMLPGAQEETVSEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRYSAILYIIMLITVFAVALAGQNVFLVLFLLIIQVLCAVWYTLSYVPFGRQAVVGCMQNTLFKPCPGTIAGMV 172
            MKAIQ+MLPGAQEE+V+EEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMT DGIRNFAALYVVGNIIALCSTGFL+GPK+QCKKMFDKTRRYS ILYIIMLI VFAVALA QNVFLVLFLLIIQVL AVWYTLSYVPFGRQAVVGCMQNTLFKPCPG IAGMV
Sbjct:   16 MKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQNTLFKPCPGAIAGMV 186
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BLAST of NO06G02350 vs. NCBI_GenBank
Match: XP_009034925.1 (hypothetical protein AURANDRAFT_59950 [Aureococcus anophagefferens] >EGB10094.1 hypothetical protein AURANDRAFT_59950 [Aureococcus anophagefferens])

HSP 1 Score: 169.5 bits (428), Expect = 9.200e-39
Identity = 83/158 (52.53%), Postives = 113/158 (71.52%), Query Frame = 0 
Query:    9 PGAQEETVSEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTTDG--IRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRYSAILYIIMLITVFAVALAGQNVFLVLFLLIIQVLCAVWYTLSYVPFGRQAVVGCMQNTLFKPCP 165
            P  QE++  +E C  CP LTYQQR+IGF  C   GYLLSF+GT+ L     D   IRNFA LY+VGN IA+ +T FL+GP++QCKKMFDKTRR+S I +++ LI  FAVA+AG NV +V+ L+ +Q+  ++WY+ SY+P+GR+ +V   Q+T   PCP
Sbjct:    6 PFTQEQSFEDEACDGCPKLTYQQRIIGFCACCGFGYLLSFMGTMMLAVGGPDAETIRNFATLYIVGNFIAIAATLFLLGPRSQCKKMFDKTRRFSTIFWLLTLIVTFAVAVAGVNVGVVVMLIFVQIGASIWYSASYIPYGRRMIVKIFQSTCCSPCP 163
[Close]
BLAST of NO06G02350 vs. NCBI_GenBank
Match: CBJ28496.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 138.7 bits (348), Expect = 1.700e-29
Identity = 68/144 (47.22%), Postives = 100/144 (69.44%), Query Frame = 0 
Query:   12 QEETVSEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRYSAILYIIMLITVFAVALAGQNVFLVLFLLIIQVLCAVWYTLSYVPFGRQAVVGCM 156
            QE T++ E+C MCPSLT+QQR+ GFV C  LGYLLSF+ T+ L S     + +FA +Y +G++IA+ +T FLIGP+ QC KMF K RR + ++Y+++L  V  +A  G    ++L +LI+Q+  AVWYT SY+P+GR  + G +
Sbjct:   44 QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWS---GDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFLGTPAGIILLVLIVQMCAAVWYTASYIPYGRAMIKGTL 184
[Close]
BLAST of NO06G02350 vs. NCBI_GenBank
Match: ETM00638.1 (hypothetical protein L917_02659 [Phytophthora parasitica])

HSP 1 Score: 129.0 bits (323), Expect = 1.400e-26
Identity = 70/147 (47.62%), Postives = 98/147 (66.67%), Query Frame = 0 
Query:   11 AQEETVSEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRYSAILYIIMLITVFAVALAGQNVFLVLFLLI-IQVLCAVWYTLSYVPFGRQAVVGCMQ 157
            A ++ ++  V   CPSLT +QR+IGF  CF LGYL+SF  T +LI+ + +G + F   Y +GNII+LC +GFL+GPK Q K MF   RR + I+Y++M+  VF VALA   + LV+ LL+ IQ   AVWY+ SYVP+GR+ +    Q
Sbjct:   43 ASDDALTPGVTPTCPSLTKKQRLIGFASCFVLGYLVSFGSTFALIAGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQLKLMFKPVRRIATIIYLVMIAVVFTVALAAPRLGLVVLLLVLIQCAAAVWYSASYVPYGRKILTSIAQ 188
[Close]
BLAST of NO06G02350 vs. NCBI_GenBank
Match: XP_008900061.1 (hypothetical protein PPTG_07536 [Phytophthora parasitica INRA-310] >ETI54297.1 hypothetical protein F443_02862 [Phytophthora parasitica P1569] >ETK94155.1 hypothetical protein L915_02746 [Phytophthora parasitica] >ETL47548.1 hypothetical protein L916_02719 [Phytophthora parasitica] >ETM53819.1 hypothetical protein L914_02742 [Phytophthora parasitica] >ETN14492.1 hypothetical protein PPTG_07536 [Phytophthora parasitica INRA-310] >ETO83044.1 hypothetical protein F444_02875 [Phytophthora parasitica P1976] >ETP24119.1 hypothetical protein F441_02841 [Phytophthora parasitica CJ01A1] >ETP52104.1 hypothetical protein F442_02837 [Phytophthora parasitica P10297])

HSP 1 Score: 128.3 bits (321), Expect = 2.400e-26
Identity = 69/147 (46.94%), Postives = 98/147 (66.67%), Query Frame = 0 
Query:   11 AQEETVSEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRYSAILYIIMLITVFAVALAGQNVFLVLFLLI-IQVLCAVWYTLSYVPFGRQAVVGCMQ 157
            A ++ ++  V   CPSLT +QR+IGF  CF LGY++SF  T +LI+ + +G + F   Y +GNII+LC +GFL+GPK Q K MF   RR + I+Y++M+  VF VALA   + LV+ LL+ IQ   AVWY+ SYVP+GR+ +    Q
Sbjct:   43 ASDDALTPGVTPTCPSLTKKQRLIGFASCFVLGYIVSFGSTFALIAGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQLKLMFKPVRRIATIIYLVMIAVVFTVALAAPRLGLVVLLLVLIQCAAAVWYSASYVPYGRKILTSIAQ 188
[Close]
BLAST of NO06G02350 vs. NCBI_GenBank
Match: XP_024572198.1 (vesicle transport protein sft2a [Plasmopara halstedii] >CEG35829.1 vesicle transport protein sft2a [Plasmopara halstedii])

HSP 1 Score: 122.5 bits (306), Expect = 1.300e-24
Identity = 66/134 (49.25%), Postives = 92/134 (68.66%), Query Frame = 0 
Query:   24 CPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRYSAILYIIMLITVFAVAL-AGQNVFLVLFLLIIQVLCAVWYTLSYVPFGRQAVVGCMQ 157
            CP+LT +QRMIGF+ CF LG+L+SF  T +LI  + +G + F   Y +GNII+LC +GFL+GPK Q K MF   RR + I+Y+ M++ V  VAL A Q   +VL L+I+Q + AVWY+ SY+PFGR+ +    Q
Sbjct:   54 CPNLTKKQRMIGFISCFVLGFLVSFGSTFALIVGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQVKLMFKPLRRIATIIYLAMIVVVLVVALTAPQLGLVVLLLVIVQCVAAVWYSASYIPFGRKVLKSIAQ 186
[Close]
BLAST of NO06G02350 vs. NCBI_GenBank
Match: GAX99480.1 (Hypothetical protein PINS_007307 [Pythium insidiosum])

HSP 1 Score: 122.5 bits (306), Expect = 1.300e-24
Identity = 71/159 (44.65%), Postives = 103/159 (64.78%), Query Frame = 0 
Query:    1 MKAIQSMLPGAQEETVS--EEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRYSAILYIIMLITVFAVALAGQNV-FLVLFLLIIQVLCAVWYTLSYVPFGRQAVVGCMQ 157
            M  I+ ++   + ETVS  E +   CPSLT  QRM GF  CF LGY++SF  T +L++    G R F  +Y +GNIIALC +GFL+GPK Q K M    RR +A++Y+ M++ V  VA+A  ++  +VL L+ IQ L AVWY+ S+VP+GR+ + G ++
Sbjct:    1 MDQIKVIIGRDKSETVSTTESLTPTCPSLTRTQRMXGFATCFVLGYIISFGSTFALLAGDDSGPR-FGIVYSLGNIIALCGSGFLVGPKQQVKLMMKPVRRVAALIYVGMIVVVLVVAIACPDLGGIVLLLVFIQFLAAVWYSASFVPYGRKIIKGILK 158
[Close]
BLAST of NO06G02350 vs. NCBI_GenBank
Match: CCI46320.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 119.0 bits (297), Expect = 1.400e-23
Identity = 62/142 (43.66%), Postives = 91/142 (64.08%), Query Frame = 0 
Query:   17 SEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRYSAILYIIMLITVFAVALAGQNV-FLVLFLLIIQVLCAVWYTLSYVPFGRQAVVGCMQN 158
            ++   +MCP+L+  QR++GF  CF  GY++SF  T +L+   T G   F   Y VGN++ALC +GFL GPK Q K M    RR +A +Y+ M++ V  VA A  N+  LVLFL++IQ L A+WYT +Y+PFG++ +   + N
Sbjct:   20 TDSSASMCPTLSKTQRLVGFAVCFVAGYIISFGSTFALLVGNTSG-ATFGITYSVGNVLALCGSGFLAGPKQQLKLMMKPVRRVAAAMYVGMIVVVLVVACAAPNLGGLVLFLVLIQFLTAIWYTATYIPFGQRVIKRVLGN 160
[Close]
BLAST of NO06G02350 vs. NCBI_GenBank
Match: CCI46321.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 119.0 bits (297), Expect = 1.400e-23
Identity = 62/142 (43.66%), Postives = 91/142 (64.08%), Query Frame = 0 
Query:   17 SEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRYSAILYIIMLITVFAVALAGQNV-FLVLFLLIIQVLCAVWYTLSYVPFGRQAVVGCMQN 158
            ++   +MCP+L+  QR++GF  CF  GY++SF  T +L+   T G   F   Y VGN++ALC +GFL GPK Q K M    RR +A +Y+ M++ V  VA A  N+  LVLFL++IQ L A+WYT +Y+PFG++ +   + N
Sbjct:   13 TDSSASMCPTLSKTQRLVGFAVCFVAGYIISFGSTFALLVGNTSG-ATFGITYSVGNVLALCGSGFLAGPKQQLKLMMKPVRRVAAAMYVGMIVVVLVVACAAPNLGGLVLFLVLIQFLTAIWYTATYIPFGQRVIKRVLGN 153
[Close]
BLAST of NO06G02350 vs. NCBI_GenBank
Match: XP_002997870.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY67845.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 115.9 bits (289), Expect = 1.200e-22
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 0 
Query:   23 MCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRYSAILYIIMLITVFAVALA---GQNVFLVLFLLIIQVLCAVWYTLSYVPFGRQAVVGCMQNTL 160
            +CPSL+YQ+R+IG V CF LG+LLS   T  L  +       FA  Y +GNI+++C T F +GP  Q + MF   RRYSA++Y++ +     +  +      +F VL  +IIQ +  VWYTLSYVP+GR     C + TL
Sbjct:   33 LCPSLSYQERVIGCVTCFLLGFLLSLGSTFRLAKLAHGNPAPFAIAYTIGNILSICCTTFFVGPWKQIQTMFHSKRRYSAVVYVVFIFVTLLLCFSHHVHHRLFFVLISVIIQFMALVWYTLSYVPYGRSIAKSCCKRTL 172
The following BLAST results are available for this feature:
BLAST of NO06G02350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26226.11.400e-8293.57vesicle transport protein sft2a [Nannochloropsis g... [more]
XP_009034925.19.200e-3952.53hypothetical protein AURANDRAFT_59950 [Aureococcus... [more]
CBJ28496.11.700e-2947.22conserved unknown protein [Ectocarpus siliculosus][more]
ETM00638.11.400e-2647.62hypothetical protein L917_02659 [Phytophthora para... [more]
XP_008900061.12.400e-2646.94hypothetical protein PPTG_07536 [Phytophthora para... [more]
XP_024572198.11.300e-2449.25vesicle transport protein sft2a [Plasmopara halste... [more]
GAX99480.11.300e-2444.65Hypothetical protein PINS_007307 [Pythium insidios... [more]
CCI46320.11.400e-2343.66unnamed protein product [Albugo candida][more]
CCI46321.11.400e-2343.66unnamed protein product [Albugo candida][more]
XP_002997870.11.200e-2242.14conserved hypothetical protein [Phytophthora infes... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000225NSK000225Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02350.1NO06G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597324gene_6553Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g61gene4276Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02350.1NO06G02350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02350 ID=NO06G02350|Name=NO06G02350|organism=Nannochloropsis oceanica|type=gene|length=1269bp
AGTTCAATCAACATGAAGGCCATTCAAAGTATGTTGCCGGGCGCCCAGGA
AGAGACGGTATCAGAGGAAGTGTGTGCCATGTGCCCATCCCTGACGTACC
AACAGCGCATGATTGGTTTCGTCGGCTGCTTTTGCCTGGGCTACCTGCTC
TCCTTCATCgtaagtagtggatagtcccacgcacctttcactgtggtgct
tgattgcgtgttcttttttgtggttgtgtcctgtatatcttgcgcgcgaa
tgttttcccactgcccctctgaattgatctctgggtcgtgccatcccgct
cgtcccccccaccctttgcttcctaccctaacatgccggtttctgcctac
tttcctcgaagctgatagcgcagctagtctgtcgatctttcccttctgtt
tgacttgctgccattcctttgtctcatcatcctccctcccccgctcccct
cctccttccctatctaccagGGCACCCTCTCCCTCATCTCCATGACCACG
GACGGCATTCGGAACTTTGCCGCGCTCTACGTCGTGGGGAACATCATTGC
CTTATGCTCCACCGGTTTCTTGATTGGACCCAAGAATCAGTGCAAGAAGA
TGTTTGATAAAACCCGGCGGTATTCCGCCATCCTTTATATCATCATGTTA
ATCACCGTTTTCGCGGTAGCCCTGGCAGGTCAGAACGTTTTCCTGGTCCT
GTTTCTGTTGATCATTCAGGTGTTATGTGCGGTGTGGTACACGCTGTCGT
ACGTACCATTTGGGAGGCAGGCGGTGGTTGGGTGCATGCAGAACACGTTG
TTCAAGCCGTGCCCAGGGACGATTGCGGGGATGGTCTAAATGGAGGGCTA
GGAGGGAGGGTTTGAAGGGAGGGACGGAAAGAGGGAAGACAAAAGAATTC
AAAAACTGCAGTGTTTTTATATTGTAATTTTATCTTCACTCTCTCCTGTC
ATGAGGGAGTCCAGCCGTCCTCGAGATGGCAGTGAGGAATGATGGCACCA
GACCAATTCTCAATACACCACTGAGAGAGATTGAAGAAAGAAAAGAAAAA
GAGAAGAGAAGTGTTTTATTCATTCATCAAAGACATCGAAGATGATGGAG
ACGACGAGGAAAGAAAAAGAGGAAGTGGTAGCGTGGGTGTGTGAATCAAA
AGGGCAGAAAACATATGGAGAGGCTGGGCAAAGCGCGCGACAAAGCAAGA
GCGAGAAACATCGAAAGCCGTCAACTTGAGCTTTCAAAAGCTAGTTATAG
CAGCACCGCATCATCGTGG
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protein sequence of NO06G02350.1

>NO06G02350.1-protein ID=NO06G02350.1-protein|Name=NO06G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MKAIQSMLPGAQEETVSEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIG
TLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRY
SAILYIIMLITVFAVALAGQNVFLVLFLLIIQVLCAVWYTLSYVPFGRQA
VVGCMQNTLFKPCPGTIAGMV*
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Synonyms
Publications