NO06G02340, NO06G02340 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G02340 vs. NCBI_GenBank
Match: EWM26203.1 (rna polymerase sigma factor [Nannochloropsis gaditana]) HSP 1 Score: 407.9 bits (1047), Expect = 4.500e-110 Identity = 214/329 (65.05%), Postives = 261/329 (79.33%), Query Frame = 0 Query: 178 SEPGTTQADALMHGRVRAVQRAAVAIQKHRALAKELGRAPSPSEWGEALGGVTEESLRVVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQLGVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQASHIWKVVEAHEKESGGNVMSKEEIAAKVGLPVARVEELGRKGQRYGLI-GASGREG------VMAVDTAQEQ---GGGQGGVLESMYLAEVEEAIRGALAALPREERTVLSLRLGLEDGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRRNVDVVKLIHRRPASFDEVLFAGG 497 S T+ D LM GR+ AVQRAAVAIQK R+L+K LGRAP+ +EW +ALGGVTEE L +L QGTVA+A LVKGW+GLV FVGK+A LSDSELQDLVVEGQ+GVVEAA+RF+GGQGA FKTY +YWVRKRVMDAA MYDRSTF G HE RQAS I K V++HE+E+GG ++S EIA KVG+P A+VE+L R+G+RYGL+ +SG++G + DT Q+ GG Q VL+SMY++EVEEA+R A+A LP+EERTVL+ RLGLEDG PK WEE+ + M+GCS+SY+RKVE+KAK LRRNVDVV+L+HRRPASFDE A G Sbjct: 118 SHASPTEHDILMQGRINAVQRAAVAIQKQRSLSKTLGRAPTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYAQSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMERSSGQDGLGRGTSLRFSDTLQDTEDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLRRNVDVVRLVHRRPASFDETFVAAG 446
BLAST of NO06G02340 vs. NCBI_GenBank
Match: XP_009395048.1 (PREDICTED: RNA polymerase sigma factor sigC [Musa acuminata subsp. malaccensis]) HSP 1 Score: 98.2 bits (243), Expect = 7.600e-17 Identity = 89/281 (31.67%), Postives = 127/281 (45.20%), Query Frame = 0 Query: 207 RALAKELGRAPSPSEWGEALGGVTEESLRVVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQLGVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQASHIWKVVEAHEKESGGNVMSKEEIAAKVGLPVARVEELGRKGQRYGLIGASGREG---VMAVDTAQEQGGGQGGVLESMYLAEVEEAIRGALAALPREERTVLSLRLGLEDGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRRNVDVVKLIHRR 485 + L +E+GR PS + W EA GV +L+ L+ G R L+K LV F+ K R DL+ G +GV+ A RF+ +G F TYV YW+RK ++ A + R + + I K H G EEIA GL +A+V + + G I R+G A G V+E +L ++A+ L L ER VL+LR GLEDG K EE+ R + ++RK+E +A +R KL H R Sbjct: 296 KELEEEIGRPPSYTRWAEA-AGVDMRTLQWRLQFGWYCRDTLIKSTRSLV-MFIAK-NYRGMGIAFDDLLQAGYVGVLNGAERFDMKKGNRFSTYVQYWIRKSILAMVARHSRMIQVPVRMESMIKRIQKARRTHYNREGRQPQD-EEIAKLTGLSLAKVRLASKCSRAVGSIEQEIRDGWRTKFREIIADASVGTPDEVIEKQHLR--QDAL-NLLQTLHPRERQVLALRYGLEDGSCKSLEEVGRLCH-VTKEWIRKIEKEAWSKIRNEEMPKKLSHYR 568
BLAST of NO06G02340 vs. NCBI_GenBank
Match: WP_072717271.1 (RNA polymerase sigma factor, RpoD/SigA family [Planktothrix tepida] >CUR36169.1 RNA polymerase sigma factor rpoD3 [Planktothrix tepida PCC 9214]) HSP 1 Score: 97.1 bits (240), Expect = 1.700e-16 Identity = 87/298 (29.19%), Postives = 145/298 (48.66%), Query Frame = 0 Query: 180 PGTTQADALMHGRVRAVQRAAVAIQKHRALAKELGRAPSPSEWGEALGGVTEESLRVVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQLGVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQASHIWKVVEAHEKESGGNVMSKEEIAAKVGLPVARVEELGRKGQRYGL---IGASGREGVMAVDTAQEQGGG-QGGVLESMYLAEVEEAIRGALAALPREERTVLSLRLGLEDGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRR 474 P T +++G + VQR +V + LA LGRAPSP+EW EA+ G++E L VLEQG A+ +V+ LV K+ R + +L DL+ EG +G+ +F+ +G F TY Y+W+R+ + A A R+ +H + + I K + + G + E+AA++ + ++ E + R L + + D ++ G + L+S ++E +A L ++R VLSLR GLEDGQ +I + S +R++E +A LR+ Sbjct: 23 PLLTHEQEILYG--KQVQRLSVVQDEWEYLATRLGRAPSPAEWAEAV-GLSEAELERVLEQGQSAKRKMVEANLRLVVSVAKKYIKR--NVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI-KKAQRQLAQKLGRAATMGELAAELEITPRQIREY-LEHARLPLSLDLRVGDNQDTELGDLLEDTGASPEDFALQSSLRTDLEV----MMADLTEQQRQVLSLRFGLEDGQSLTLAKIGDRL-NISRERVRQIEREALTKLRK 308
BLAST of NO06G02340 vs. NCBI_GenBank
Match: WP_083625653.1 (RNA polymerase sigma factor, RpoD/SigA family [Planktothrix serta] >CUR22796.1 RNA polymerase sigma factor rpoD3 [Planktothrix serta PCC 8927]) HSP 1 Score: 95.9 bits (237), Expect = 3.800e-16 Identity = 87/297 (29.29%), Postives = 143/297 (48.15%), Query Frame = 0 Query: 180 PGTTQADALMHGRVRAVQRAAVAIQKHRALAKELGRAPSPSEWGEALGGVTEESLRVVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQLGVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQASHIWKVVEAHEKESGGNVMSKEEIAAKVGLPVARVEE-LGRKGQRYGL-IGASGREGVMAVDTAQEQG-GGQGGVLESMYLAEVEEAIRGALAALPREERTVLSLRLGLEDGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRR 474 P T +++G + VQR + + LA LGRAPSP+EW EAL G++E L VL+QG A+ +V+ LV K+ R + +L DL+ EG +G+ +F+ +G F TY Y+W+R+ + A A R+ +H + + I K + + G + E+A ++ L ++ E L R L + + D ++ G + L+S ++E +A L ++R VLSLR GLEDGQ +I + S +R++E +A LR+ Sbjct: 23 PLLTHEQEILYG--KQVQRLSAVQDEWEDLATRLGRAPSPAEWAEAL-GLSEAELERVLDQGQAAKRKMVEANLRLVVSVAKKYIKR--NVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI-KKAQRQLAQQLGRSATMGELAVELELTPRQIREYLERARLPLSLDLRVGDNQDTELGDLLEDTGTSPEDFALQSSLRTDLEV----MMADLTEQQRQVLSLRFGLEDGQSLTLAKIGERL-NISRERVRQIEREALTKLRK 308
BLAST of NO06G02340 vs. NCBI_GenBank
Match: WP_008278735.1 (RNA polymerase sigma factor, RpoD/SigA family [Cyanothece sp. CCY0110] >EAZ88174.1 RNA polymerase sigma factor [Cyanothece sp. CCY0110]) HSP 1 Score: 93.6 bits (231), Expect = 1.900e-15 Identity = 81/304 (26.64%), Postives = 147/304 (48.36%), Query Frame = 0 Query: 180 PGTTQADALMHGRVRAVQRAAVAIQKHRALAKELGRAPSPSEWGEALGGVTEESLRVVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQLGVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQASHIWKVVEAHEKESGGNVMSKEEIAAKVGLPVARVEE-LGRKGQRYGL-IGASGREGVMAVDTAQEQGGGQGGVLESMYLAE--VEEAIRGALAALPREERTVLSLRLGLEDGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRRNVDVVK 480 P T +++G + VQ ++K LA+ +G+ PS EW + + + E++L+ LEQG A+ +++ LV K+ R + E DL+ EG LG+ +F+ +G F TY Y+W+R+ + A A R+ +H + + I K + +S G + EIA ++ + +++ E L Q L + + + ++Q GV +Y+ + + + + +A L ++RTVL+LR GLEDG+ +I + + S +R++E +A LRR VK Sbjct: 31 PLLTHEQEIIYG--KQVQTMMNLLEKKEELAQRVGKEPSIQEWAKEV-NIEEKALQKALEQGERAKRKMIEANLRLVVAIAKKYQKR--NMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI-KKTQRELSQSLGRSATPAEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTELSELLEDQ-----GVSPDIYITQELLRQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRL-NISRERVRQLEHQALAQLRRRRGNVK 322
BLAST of NO06G02340 vs. NCBI_GenBank
Match: XP_021302759.1 (uncharacterized protein LOC8066548 isoform X1 [Sorghum bicolor] >EES18778.2 hypothetical protein SORBI_3009G253000 [Sorghum bicolor]) HSP 1 Score: 92.8 bits (229), Expect = 3.200e-15 Identity = 92/313 (29.39%), Postives = 141/313 (45.05%), Query Frame = 0 Query: 177 QSEPGTTQADALMHGRVRAVQRAAVAIQKHRALAKELGRAPSPSEWGEALGGVTEESLRVVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQLGVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQASHIWKVVEAHE--KESGGNVMSKEEIAAKVGLPVARVEELGRKGQR-----YGLIGASGREGVMAVDTAQEQGGGQGGVLESMYLAEVEEAIRGALAALPREERTVLSLRLGLEDGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRRNVDVVKLIH 483 +S PG + + A + +++K R + G+ S W EA G+ E L L+ G R L+ + LV + + L DL+ G++GV++ A +F+ +G F TYV YW+RK ++ A+ ++ L R S + KV EA + S G S E+AA VG+ VA V L RK R Y IG V + + +++ ++ E + L LP E VL LR GLEDG+ + EEI M S ++RK+E A LR + DV + +H Sbjct: 282 KSHPGRRRIIVREQSALLATIKECASLEKIREKMVKEGQEVSYHRWAEA-AGMDEAELMSRLQTGYCCRERLLVTTEWLVRCIARSYTG--MGTALDDLLQAGKMGVLDGAEKFDTRKGCRFSTYVKYWIRKGML---ALLAENSGVTLLPARMESIMRKVKEARRGIRYSEGRNPSDSEVAAAVGVSVANV-RLARKCSRRPVSLYSEIGIGQHAKFAEVIPDEAAAAAEAPDEAALFRGQLRERLLLVLGRLPAREGHVLRLRHGLEDGRCRSLEEI-GGMYRVSKEWIRKIEKSAMARLRDDDDVRRDLH 586
BLAST of NO06G02340 vs. NCBI_GenBank
Match: XP_002440362.2 (uncharacterized protein LOC8066548 isoform X2 [Sorghum bicolor]) HSP 1 Score: 92.8 bits (229), Expect = 3.200e-15 Identity = 92/313 (29.39%), Postives = 141/313 (45.05%), Query Frame = 0 Query: 177 QSEPGTTQADALMHGRVRAVQRAAVAIQKHRALAKELGRAPSPSEWGEALGGVTEESLRVVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQLGVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQASHIWKVVEAHE--KESGGNVMSKEEIAAKVGLPVARVEELGRKGQR-----YGLIGASGREGVMAVDTAQEQGGGQGGVLESMYLAEVEEAIRGALAALPREERTVLSLRLGLEDGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRRNVDVVKLIH 483 +S PG + + A + +++K R + G+ S W EA G+ E L L+ G R L+ + LV + + L DL+ G++GV++ A +F+ +G F TYV YW+RK ++ A+ ++ L R S + KV EA + S G S E+AA VG+ VA V L RK R Y IG V + + +++ ++ E + L LP E VL LR GLEDG+ + EEI M S ++RK+E A LR + DV + +H Sbjct: 269 KSHPGRRRIIVREQSALLATIKECASLEKIREKMVKEGQEVSYHRWAEA-AGMDEAELMSRLQTGYCCRERLLVTTEWLVRCIARSYTG--MGTALDDLLQAGKMGVLDGAEKFDTRKGCRFSTYVKYWIRKGML---ALLAENSGVTLLPARMESIMRKVKEARRGIRYSEGRNPSDSEVAAAVGVSVANV-RLARKCSRRPVSLYSEIGIGQHAKFAEVIPDEAAAAAEAPDEAALFRGQLRERLLLVLGRLPAREGHVLRLRHGLEDGRCRSLEEI-GGMYRVSKEWIRKIEKSAMARLRDDDDVRRDLH 573
BLAST of NO06G02340 vs. NCBI_GenBank
Match: XP_021827462.1 (RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Prunus avium]) HSP 1 Score: 92.8 bits (229), Expect = 3.200e-15 Identity = 82/273 (30.04%), Postives = 143/273 (52.38%), Query Frame = 0 Query: 209 LAKELGRAPSPSEWGEALGGVTEESLRVVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQLGVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQASHIWKVVEAHEK--ESGGNVMSKEEIAAKVGLPVARVEELGRKGQRYGLIGASGREGVMAVD--TAQEQGGGQGGVLESMYLAE--VEEAIRGALAALPREERTVLSLRLGLEDGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRRNV 476 L + GR P+ EW EA+ G++ + L+ L GT +R L+ +V ++ R LQDL+ EG +G++++ +F+ G F TY Y+W+R+ V A + R T + S + KV+EA + + G + SKEE+A +VG+ V ++E+L + + S ++ V A T QE G + + +A+ + + +R L+ L ER ++ LR G+EDG+ + EI M G S +R++ES+A + LR+++ Sbjct: 299 LQTQFGREPTLIEWAEAV-GISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGR--GLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSR---TIRLPENVYSLLGKVLEAKKSCIQEGNHNPSKEELARRVGITVEKLEKLLYATR----MPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEI-GGMFGLSKERVRQLESRAFLKLRQSL 560
BLAST of NO06G02340 vs. NCBI_GenBank
Match: XP_021827463.1 (RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Prunus avium]) HSP 1 Score: 92.8 bits (229), Expect = 3.200e-15 Identity = 82/273 (30.04%), Postives = 143/273 (52.38%), Query Frame = 0 Query: 209 LAKELGRAPSPSEWGEALGGVTEESLRVVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQLGVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQASHIWKVVEAHEK--ESGGNVMSKEEIAAKVGLPVARVEELGRKGQRYGLIGASGREGVMAVD--TAQEQGGGQGGVLESMYLAE--VEEAIRGALAALPREERTVLSLRLGLEDGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRRNV 476 L + GR P+ EW EA+ G++ + L+ L GT +R L+ +V ++ R LQDL+ EG +G++++ +F+ G F TY Y+W+R+ V A + R T + S + KV+EA + + G + SKEE+A +VG+ V ++E+L + + S ++ V A T QE G + + +A+ + + +R L+ L ER ++ LR G+EDG+ + EI M G S +R++ES+A + LR+++ Sbjct: 265 LQTQFGREPTLIEWAEAV-GISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGR--GLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSR---TIRLPENVYSLLGKVLEAKKSCIQEGNHNPSKEELARRVGITVEKLEKLLYATR----MPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEI-GGMFGLSKERVRQLESRAFLKLRQSL 526
BLAST of NO06G02340 vs. NCBI_GenBank
Match: AGT16566.1 (RNA polymerase sigma factor [Saccharum hybrid cultivar R570]) HSP 1 Score: 92.4 bits (228), Expect = 4.200e-15 Identity = 93/313 (29.71%), Postives = 141/313 (45.05%), Query Frame = 0 Query: 177 QSEPGTTQADALMHGRVRAVQRAAVAIQKHRALAKELGRAPSPSEWGEALGGVTEESLRVVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQLGVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQASHIWKVVEAHE--KESGGNVMSKEEIAAKVGLPVARVEELGRKGQR-----YGLIGASGREGVMAVDTAQEQGGGQGGVLESMYLAEVEEAIRGALAALPREERTVLSLRLGLEDGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRRNVDVVKLIH 483 +S PG + + A + +++K R + G+ S W EA G+ E L L+ G R L+ + LV + + L DL+ G++GV++ A +F+ +G F TYV YW+RK ++ A+ ++ L R S + KV EA + S G S EIAA VG+ VA V L RK R Y IG V + + +++ ++ E + L LP E VL LR GLEDG+ + EEI M S ++RK+E A LR + DV + +H Sbjct: 222 KSHPGRRRIIVREQSALLATIKECASLEKIREKMAKEGQEVSYHRWAEA-AGMDEAELMSRLQAGYCCRERLLVTTEWLVRCIARSYTG--MGTALDDLLQAGKMGVLDGAEKFDTRKGCRFSTYVKYWIRKGML---ALLAENSGVTLLPARMESIMRKVKEARRGIRYSQGRNPSDSEIAAAVGVSVANV-RLARKCSRRPVSLYSEIGIGQHAKFAEVIPDEAAASVEAPDEAALFRGQLRERLLLVLGRLPAREGHVLRLRHGLEDGRCRSLEEI-GGMYRVSKEWIRKIEKSAMARLRDDDDVRRDLH 526 The following BLAST results are available for this feature:
BLAST of NO06G02340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G02340 ID=NO06G02340|Name=NO06G02340|organism=Nannochloropsis oceanica|type=gene|length=1695bpback to top protein sequence of NO06G02340.1 >NO06G02340.1-protein ID=NO06G02340.1-protein|Name=NO06G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bpback to top Synonyms
Publications
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