NO06G02330, NO06G02330 (gene) Nannochloropsis oceanica

Overview
NameNO06G02330
Unique NameNO06G02330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length360
Alignment locationchr6:673616..673975 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:673616..673975 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005349UPF0136_TM
Homology
BLAST of NO06G02330 vs. NCBI_GenBank
Match: EWM26221.1 (Uncharacterized protein family UPF0136, Transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 186.0 bits (471), Expect = 6.700e-44
Identity = 93/119 (78.15%), Postives = 106/119 (89.08%), Query Frame = 0
Query:    1 MYSFCITLPYSGMVAVGGVIGYVNKNSMPSLLAGLGLGGALALLGCGELAEYKKTGTVTKKWTLLSLLLSGGMTAAMGMKCAKSKGSLATAIFAGTSGLVSLFLAYRVMVPVPPKKEKK 120
            MYSFCIT+PYSG+VA+GG+IGYV   S+PSLLAGLGLG  LA+LG GEL EYKKT  VT+KWTLLSLL+SGGMT AMG+KCAK+KGSLA AIFA TSGLVS+FL YRV+VPVPPKK+KK
Sbjct:    1 MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVFLMYRVVVPVPPKKDKK 119          
BLAST of NO06G02330 vs. NCBI_GenBank
Match: OQR96032.1 (H/ACA ribonucleoprotein complex subunit [Thraustotheca clavata])

HSP 1 Score: 94.4 bits (233), Expect = 2.600e-16
Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 0
Query:    1 MYSFCITLPYSGMVAVGGVIGYVNKNSMPSLLAGLGLGGALALLGCGELAEYKKTGTVTKKWTLLSLLLSGGMTAAMGMKCAKSKGSLATAIFAGTSGLVSLFLAYRVM 110
            MY FC+TLPY G +A+GG++GYVN  S+ SL AGLG G  L L G    +EY+++  V+K W+ LSL +S  +T  MG++  ++       + AGTS  +SLF  Y+++
Sbjct:  213 MYDFCLTLPYGGAIALGGLVGYVNSGSVISLTAGLGAGSLLLLFGTVSYSEYQQSPKVSKLWSGLSLGVSSVLTVVMGLRYKETNSLFPAGVVAGTSAAMSLFYVYKLL 321          
BLAST of NO06G02330 vs. NCBI_GenBank
Match: XP_008611148.1 (hypothetical protein SDRG_07108 [Saprolegnia diclina VS20] >EQC35398.1 hypothetical protein SDRG_07108 [Saprolegnia diclina VS20])

HSP 1 Score: 91.3 bits (225), Expect = 2.200e-15
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 0
Query:    1 MYSFCITLPYSGMVAVGGVIGYVNKNSMPSLLAGLGLGGALALLGCGELAEYKKTGTVTKKWTLLSLLLSGGMTAAMGMKCAKSKGSLATAIFAGTSGLVSLFLAYRV 109
            MY FC+TLPY G +A+GG++GYVN  S+ SL AGLG G  L L G     EY+++  ++K W+ LSL +S  +T  MG++  ++       + AGTS  +S F  Y++
Sbjct:    1 MYDFCLTLPYGGAIALGGLVGYVNSGSVISLTAGLGAGSLLLLFGTASYQEYQQSPKISKLWSGLSLGVSSVLTVVMGLRYKETNSLFPAGVVAGTSAAMSAFYLYKL 108          
BLAST of NO06G02330 vs. NCBI_GenBank
Match: XP_012204491.1 (hypothetical protein SPRG_09677 [Saprolegnia parasitica CBS 223.65] >KDO24844.1 hypothetical protein SPRG_09677 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 91.3 bits (225), Expect = 2.200e-15
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 0
Query:    1 MYSFCITLPYSGMVAVGGVIGYVNKNSMPSLLAGLGLGGALALLGCGELAEYKKTGTVTKKWTLLSLLLSGGMTAAMGMKCAKSKGSLATAIFAGTSGLVSLFLAYRV 109
            MY FC+TLPY G +A+GG++GYVN  S+ SL AGLG G  L L G     EY+++  ++K W+ LSL +S  +T  MG++  ++       + AGTS  +S F  Y++
Sbjct:    1 MYDFCLTLPYGGAIALGGLVGYVNSGSVISLTAGLGAGSLLLLFGTASYQEYQQSPKISKLWSGLSLGVSSVLTVVMGLRYKETNSLFPAGVVAGTSAAMSAFYLYKL 108          
BLAST of NO06G02330 vs. NCBI_GenBank
Match: OQR94249.1 (hypothetical protein ACHHYP_01524 [Achlya hypogyna])

HSP 1 Score: 88.6 bits (218), Expect = 1.400e-14
Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 0
Query:    1 MYSFCITLPYSGMVAVGGVIGYVNKNSMPSLLAGLGLGGALALLGCGELAEYKKTGTVTKKWTLLSLLLSGGMTAAMGMKCAKSKGSLATAIFAGTSGLVSLFLAYRVM 110
            MY FC+TLPY G +A+GG++GYVN  S+ SL AGLG G  L L G     EY+++  ++K W+ LSL +S  +T  MG++  ++       + AGTS  +S F   +++
Sbjct:    1 MYDFCLTLPYGGAIALGGLVGYVNSGSVISLTAGLGAGSLLLLFGTASYQEYQQSPKISKIWSGLSLGVSSILTVVMGLRYKETNSLFPAGVVAGTSAAMSAFYVIKLL 109          
BLAST of NO06G02330 vs. NCBI_GenBank
Match: XP_009833697.1 (hypothetical protein H257_09238 [Aphanomyces astaci] >ETV76785.1 hypothetical protein H257_09238 [Aphanomyces astaci])

HSP 1 Score: 83.2 bits (204), Expect = 6.100e-13
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 0
Query:    1 MYSFCITLPYSGMVAVGGVIGYVNKNSMPSLLAGLGLGGALALLGCGELAEYKKTGTVTKKWTLLSLLLSGGMTAAMGMKCAKSKGSLATAIFAGTSGLVSLF 104
            MY FC+TLPY   +AVGG++GYVN  S  SL AG+G G  L + G     E++ +  V+K W+ LSL +S  ++  MG++   ++  +   + AGTS  +SLF
Sbjct:    1 MYDFCLTLPYGAAIAVGGIVGYVNSGSSASLTAGVGAGTLLLIFGYASYQEFQSSPVVSKTWSALSLGVSSVLSVVMGLRYKDTQNFVPAGVIAGTSIGMSLF 103          
BLAST of NO06G02330 vs. NCBI_GenBank
Match: XP_008868656.1 (hypothetical protein H310_05665 [Aphanomyces invadans] >ETW02051.1 hypothetical protein H310_05665 [Aphanomyces invadans])

HSP 1 Score: 80.5 bits (197), Expect = 3.900e-12
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 0
Query:    1 MYSFCITLPYSGMVAVGGVIGYVNKNSMPSLLAGLGLGGALALLGCGELAEYKKTGTVTKKWTLLSLLLSGGMTAAMGMKCAKSKGSLATAIFAGTSGLVSLF 104
            MY FC+TLPY   +AVGG++GYVN  S  SL AG+G G  L + G     E++ +  V+K W+ LSL +S  ++  MG++  +++  +   + A TS  +SLF
Sbjct:    1 MYDFCLTLPYGAAIAVGGIVGYVNSGSSASLTAGVGAGTLLLVFGYASYQEFQSSPIVSKTWSALSLGVSAVLSVVMGLRYKETQNFVPAGLIASTSIGMSLF 103          
BLAST of NO06G02330 vs. NCBI_GenBank
Match: GAX93850.1 (Hypothetical protein PINS_001756, partial [Pythium insidiosum])

HSP 1 Score: 79.0 bits (193), Expect = 1.100e-11
Identity = 43/119 (36.13%), Postives = 65/119 (54.62%), Query Frame = 0
Query:    1 MYSFCITLPYSGMVAVGGVIGYVNKNSMPSLLAGLGLGGALALLGCGELAEYKKTGTVTKKWTLLSLLLSGGMTAAMGMKCAKSKGSLATAIFAGTSGLVSLFLAYRVMVPVPPKKEKK 120
            MY FC+T+PY  ++ +GG+IGYVN  S  S++AG   G  L L+G     EY ++   +K W  LSL +S  +T  MG++   +         A TS  +SLF   +++    PK +KK
Sbjct:   14 MYDFCLTIPYGVLLGIGGLIGYVNSGSATSIIAGGASGVFLTLVGYASYQEYTQSPVTSKLWPGLSLAVSAPLTVVMGLRFQNTGAFFPAGFVAATSAXMSLFYLAKLVSNPKPKYKKK 132          
BLAST of NO06G02330 vs. NCBI_GenBank
Match: CBJ26023.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.6 bits (179), Expect = 4.800e-10
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 0
Query:    1 MYSFCITLPYSGMVAVGGVIGYVNKNSMPSLLAGLGLGGALALLGCGELAEYKKTGTVTKKWTLLSLLLSGGMTAAMGMKCAKSKGSLATAIFAGTSGLVSLFLAYRV 109
            M+ FC+T+PY  +V  GG+IG++   S  SL+AG G G  L LLG G   EYK  GTV++ WT+ SL++S  +   M  +  K+   + +A     + L++ F AY++
Sbjct:    1 MHDFCLTIPYGMIVMFGGIIGFLAAGSKASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQM 108          
BLAST of NO06G02330 vs. NCBI_GenBank
Match: XP_024585636.1 (transmembrane protein 14c [Plasmopara halstedii] >CEG49267.1 transmembrane protein 14c [Plasmopara halstedii])

HSP 1 Score: 72.0 bits (175), Expect = 1.400e-9
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 0
Query:    1 MYSFCITLPYSGMVAVGGVIGYVNKNSMPSLLAGLGLGGA-LALLGCGELAEYKKTGTVTKKWTLLSLLLSGGMTAAMGMKCAKSKGSLATAIFAGTSGLVSLFLAYRVMVPVPPKKEKK 120
            MY FC+T+PY  ++ VGGVIG++N  S  S+ AG GL GA L+ LG     EYK++   +K W  LSL +S  +T  MG +  K+         A  S  +S+F  + +     P+ +KK
Sbjct:    1 MYDFCLTIPYGMLLGVGGVIGFINTGSTMSVAAG-GLSGAILSFLGYCSYNEYKQSPVTSKLWPGLSLAVSTALTITMGNRYNKTNAFFPAGFLAAYSAGMSIFYVWVLTKKSKPQYKKK 119          
The following BLAST results are available for this feature:
BLAST of NO06G02330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26221.16.700e-4478.15Uncharacterized protein family UPF0136, Transmembr... [more]
OQR96032.12.600e-1643.12H/ACA ribonucleoprotein complex subunit [Thraustot... [more]
XP_008611148.12.200e-1541.67hypothetical protein SDRG_07108 [Saprolegnia dicli... [more]
XP_012204491.12.200e-1541.67hypothetical protein SPRG_09677 [Saprolegnia paras... [more]
OQR94249.11.400e-1440.37hypothetical protein ACHHYP_01524 [Achlya hypogyna... [more]
XP_009833697.16.100e-1340.78hypothetical protein H257_09238 [Aphanomyces astac... [more]
XP_008868656.13.900e-1239.81hypothetical protein H310_05665 [Aphanomyces invad... [more]
GAX93850.11.100e-1136.13Hypothetical protein PINS_001756, partial [Pythium... [more]
CBJ26023.14.800e-1037.96conserved unknown protein [Ectocarpus siliculosus][more]
XP_024585636.11.400e-937.50transmembrane protein 14c [Plasmopara halstedii] >... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000227NSK000227Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02330.1NO06G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597321gene_6551Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g59gene4278Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02330.1NO06G02330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02330 ID=NO06G02330|Name=NO06G02330|organism=Nannochloropsis oceanica|type=gene|length=360bp
ATGTACTCCTTCTGCATCACCCTCCCTTACTCGGGCATGGTCGCCGTGGG
CGGTGTTATTGGCTACGTCAACAAGAACTCCATGCCCTCCCTGCTGGCCG
GCCTGGGCTTGGGCGGGGCCTTGGCCTTGTTGGGGTGCGGTGAGTTGGCC
GAGTACAAGAAGACGGGGACCGTGACGAAGAAATGGACATTGCTCTCCCT
TCTCTTGTCAGGGGGTATGACGGCAGCGATGGGAATGAAGTGCGCCAAGA
GCAAGGGTAGCTTGGCCACGGCCATCTTTGCTGGGACGTCCGGGTTGGTC
TCGTTGTTTTTGGCATACCGTGTTATGGTGCCCGTGCCGCCCAAGAAGGA
GAAGAAGTAA
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protein sequence of NO06G02330.1

>NO06G02330.1-protein ID=NO06G02330.1-protein|Name=NO06G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MYSFCITLPYSGMVAVGGVIGYVNKNSMPSLLAGLGLGGALALLGCGELA
EYKKTGTVTKKWTLLSLLLSGGMTAAMGMKCAKSKGSLATAIFAGTSGLV
SLFLAYRVMVPVPPKKEKK*
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Synonyms
Publications