NO06G02130, NO06G02130 (gene) Nannochloropsis oceanica

Overview
NameNO06G02130
Unique NameNO06G02130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1958
Alignment locationchr6:621467..623424 -

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Properties
Property NameValue
DescriptionUbiquitin-40S ribosomal protein S27a
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:621467..623424 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005515protein binding
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR006846Ribosomal_S30
IPR000626Ubiquitin-like
IPR019956Ubiquitin
Homology
[Close]
BLAST of NO06G02130 vs. NCBI_GenBank
Match: EWM26229.1 (ubiquitin ribosomal protein s27ae fusion protein [Nannochloropsis gaditana])

HSP 1 Score: 257.7 bits (657), Expect = 2.800e-65
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0 
Query:   44 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKNPRGRAKKRVLYSRRFLNVATGVGGKRLGPN 178
            MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRK PRGRAKKRVLYSRRFLNVATGVGGKRLGPN
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPN 134
[Close]
BLAST of NO06G02130 vs. NCBI_GenBank
Match: GBG32602.1 (Ubiquitin [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 242.3 bits (617), Expect = 1.200e-60
Identity = 124/143 (86.71%), Postives = 136/143 (95.10%), Query Frame = 0 
Query:   44 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQ-EKRKNPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADKMQK 186
            MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQ +K+K+PRGRAKKR+ Y+RRF+NV    GGK LGPN+NA+++++
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQGDKKKDPRGRAKKRLQYNRRFVNVVRAPGGKTLGPNNNAERIRR 143
[Close]
BLAST of NO06G02130 vs. NCBI_GenBank
Match: XP_009836644.1 (polyubiquitin [Aphanomyces astaci] >ETV73708.1 polyubiquitin [Aphanomyces astaci])

HSP 1 Score: 229.6 bits (584), Expect = 8.100e-57
Identity = 118/140 (84.29%), Postives = 129/140 (92.14%), Query Frame = 0 
Query:   44 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKV-EKQEKRKNPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADK 183
            MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL+RAGKVK QTPKV +K++ +K  RGRAKKR+ Y+RRF+NV  G G K+LGPNSNA K
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLSRAGKVKNQTPKVAKKEDTKKQKRGRAKKRIQYNRRFVNVVGGAGAKKLGPNSNAPK 140
[Close]
BLAST of NO06G02130 vs. NCBI_GenBank
Match: OQR82681.1 (ubiquitin [Achlya hypogyna])

HSP 1 Score: 229.6 bits (584), Expect = 8.100e-57
Identity = 118/140 (84.29%), Postives = 127/140 (90.71%), Query Frame = 0 
Query:   44 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKNPR-GRAKKRVLYSRRFLNVATGVGGKRLGPNSNADK 183
            MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL+RAGKVK QTPKV K E +  P+ GRAKKR+ Y+RRF+NV    GGK+LGPNSNA K
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLSRAGKVKNQTPKVAKAEDKSKPKTGRAKKRIQYNRRFVNVVANAGGKKLGPNSNAPK 140
[Close]
BLAST of NO06G02130 vs. NCBI_GenBank
Match: OQR93793.1 (ubiquitin [Thraustotheca clavata])

HSP 1 Score: 229.6 bits (584), Expect = 8.100e-57
Identity = 118/140 (84.29%), Postives = 128/140 (91.43%), Query Frame = 0 
Query:   44 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEK-QEKRKNPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADK 183
            MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL+RAGKVK QTPKV K ++K+K   GRAKKR+ Y+RRF+NV    GGK+LGPNSNA K
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLSRAGKVKNQTPKVAKAEDKKKQKTGRAKKRIQYNRRFVNVVANAGGKKLGPNSNAPK 140
[Close]
BLAST of NO06G02130 vs. NCBI_GenBank
Match: XP_008610333.1 (50S ribosomal protein L40e [Saprolegnia diclina VS20] >EQC36227.1 50S ribosomal protein L40e [Saprolegnia diclina VS20])

HSP 1 Score: 228.4 bits (581), Expect = 1.800e-56
Identity = 118/140 (84.29%), Postives = 127/140 (90.71%), Query Frame = 0 
Query:   44 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKNPR-GRAKKRVLYSRRFLNVATGVGGKRLGPNSNADK 183
            MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL+RAGKVK QTPKV K E +K  R GRAKKR+ Y+RRF+NV    GGK++GPNSNA K
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLSRAGKVKNQTPKVAKAEDKKKQRAGRAKKRIQYNRRFVNVVANAGGKKVGPNSNAPK 140
[Close]
BLAST of NO06G02130 vs. NCBI_GenBank
Match: XP_008869712.1 (polyubiquitin [Aphanomyces invadans] >ETW01864.1 polyubiquitin [Aphanomyces invadans])

HSP 1 Score: 222.2 bits (565), Expect = 1.300e-54
Identity = 116/140 (82.86%), Postives = 128/140 (91.43%), Query Frame = 0 
Query:   44 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKV-EKQEKRKNPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADK 183
            MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL+RAGKVK QTPKV +K++ +K  RGRAKKR+ Y+RRF+NV    G K++GPNSNA K
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLSRAGKVKNQTPKVAKKEDTKKQKRGRAKKRIQYNRRFVNVV--AGAKKMGPNSNAPK 138
[Close]
BLAST of NO06G02130 vs. NCBI_GenBank
Match: CCI39223.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 221.9 bits (564), Expect = 1.700e-54
Identity = 119/140 (85.00%), Postives = 128/140 (91.43%), Query Frame = 0 
Query:   44 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQE-KRKNPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADK 183
            MQIFVKTLTGKTITL+VE +DTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKV KQE K+K   GRAKKR  Y+RRF+NV T  GGKR+GPNSNA+K
Sbjct:    1 MQIFVKTLTGKTITLEVESADTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLNDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVNKQEGKKKALTGRAKKRWQYNRRFVNVVT--GGKRVGPNSNANK 138
[Close]
BLAST of NO06G02130 vs. NCBI_GenBank
Match: XP_012894980.1 (uncharacterized protein [Blastocystis hominis] >XP_012895008.1 uncharacterized protein [Blastocystis hominis] >CBK20932.2 unnamed protein product [Blastocystis hominis] >CBK20960.2 unnamed protein product [Blastocystis hominis])

HSP 1 Score: 220.3 bits (560), Expect = 4.900e-54
Identity = 115/142 (80.99%), Postives = 124/142 (87.32%), Query Frame = 0 
Query:   44 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKNPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADKMQK 186
            MQIFVKTLTGKTITLDVE SDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL RAGKVK QTPKV+KQEK K+  GRAKKR  Y+RR++NV    G KR+GPN+ A +  +
Sbjct:    1 MQIFVKTLTGKTITLDVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLTRAGKVKNQTPKVDKQEKAKSHVGRAKKREQYNRRYVNVVLAPGAKRVGPNNFAARQAR 142
[Close]
BLAST of NO06G02130 vs. NCBI_GenBank
Match: OAO14234.1 (Ubiquitin [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 219.5 bits (558), Expect = 8.400e-54
Identity = 116/137 (84.67%), Postives = 121/137 (88.32%), Query Frame = 0 
Query:   44 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKNPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNA 181
            MQIFVKTLTGKTITLDVE SDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL RAGKVK QTPKVEKQEK K+  GRAKKR +Y+RR++NV    G KR  PNS A
Sbjct:    1 MQIFVKTLTGKTITLDVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLTRAGKVKNQTPKVEKQEKGKSHVGRAKKREIYNRRYVNVVLAPGAKRQSPNSFA 137
The following BLAST results are available for this feature:
BLAST of NO06G02130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26229.12.800e-6599.25ubiquitin ribosomal protein s27ae fusion protein [... [more]
GBG32602.11.200e-6086.71Ubiquitin [Aurantiochytrium sp. FCC1311][more]
XP_009836644.18.100e-5784.29polyubiquitin [Aphanomyces astaci] >ETV73708.1 pol... [more]
OQR82681.18.100e-5784.29ubiquitin [Achlya hypogyna][more]
OQR93793.18.100e-5784.29ubiquitin [Thraustotheca clavata][more]
XP_008610333.11.800e-5684.2950S ribosomal protein L40e [Saprolegnia diclina VS... [more]
XP_008869712.11.300e-5482.86polyubiquitin [Aphanomyces invadans] >ETW01864.1 p... [more]
CCI39223.11.700e-5485.00unnamed protein product [Albugo candida][more]
XP_012894980.14.900e-5480.99uncharacterized protein [Blastocystis hominis] >XP... [more]
OAO14234.18.400e-5484.67Ubiquitin [Blastocystis sp. ATCC 50177/Nand II][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL090nonsL090Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR146ngnoR146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000239NSK000239Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02130.1NO06G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597252gene_6525Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g47gene4288Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02130.1NO06G02130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02130 ID=NO06G02130|Name=NO06G02130|organism=Nannochloropsis oceanica|type=gene|length=1958bp
TGCATTGGGCCTTGGCACGGCCGCGTTGGATGGCGCAGAGAGCCGGTCCT
TCGCCTGCTGGCCTTGCCTGCCGGGGTTCTATGATCATGGCTTAGGGTCA
GGGTGGTGGGCCTGGTGGCTGTTGCTTGTTCTGCATGACGCAGGCACAAA
CATGTCACCCCCCCCCATCCTCTTCCCGTACTGACTTTCTCCTCCATCCA
CCATCTTCCTCTCCAACACAAGGAAGAAGAAGACTTCGCGTGGCATGGAG
GAAAGGCCCAAAGCAATGGTTTTCCCGTCTGAGCACGTCCGCCTTATTCC
TTACCATATGAATGGCTCTAACAGACTGGCACATGGTGGTGGTGGCTGTA
CGGTGGCCTTTCCTCCCCACCCTCTCCTCCTAAACTGGCCCCTGAACGCA
AGCGAAAGAGGGAGGGCAGGCTCATGTCGTGGCTCCCCTCGCGTGTTTTG
CCACAAAAACGTTCAGGCAACATTCAGCGGCACAATATTCAGCTATCTCA
CTCTCTTCGGTTATCCCACACCCCTTATTCCGCTGCACTCACAGCAGCAA
GCATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATTACCCTCGAT
GTCGAGCCCAGCGACACAATCGAGAACGTGAAGCAAAAGATTCAGGACAA
GGAGGGTATCCCCCCTGACCAGCAGCGACTTATCTTTGCCGGCAAGCAGT
TGGAGGATGGCCGTACGCTCAGgtgagggttggactttacctaaagggag
ggaaggggaaggagggagttggaacgagggatgatgggagaggcaatgga
tggcgggttggaggatgattgtgacaacaaatttggtcaagtgagaagta
atacgcttctaccacatgattcgtttctcaagttttccgtacgagggtga
ctgaagaggcagtcacaggcgtcgtggcatcgttgggtggggaggacgca
caagtaggcgacgaggcaccagttggtgacgagatcgtgctggttgcgag
cttttgcatatctagtctttcaagggtgccggctgcgttaggttttactg
gcatacttttcgcatgctctctgtcggtccgatactcacgcatcgtccct
ccctccctccacccaaacagCGACTACAACATCCAGAAGGAATCCACTCT
ACATTTGGTCCTGCGACTGCGTGGCGGTGGGAAGGTGCACGGTTCCTTGG
CCCGTGCCGGTAAGGTGAAGGGGCAGACTCCCAAGGTTGAAAAGCAGGAG
AAGCGCAAGAACCCCCGTGGGCGTGCCAAGAAGCGTGTGCTTTACTCGCG
CCGTTTCCTGAACGTGGCCACCGGTGTGGGTGGGAAGCGATTGGGGCCCA
ACAGCAATGCGGACAAGATGCAGAAGTAAATGGGTGGTGTTAAGTGTCCA
TGTCTGGAGGCTTGAAGGAAGGAGAAGAGGGTGGTGAGGATCTTTCCTCC
CTCGAGGGTGAACAAATGAGACGTTAGAGAGTAGCAACACACACATATAC
GCACTTGCAGCAGCTGTGAGGAGAGGGTGGAGGGAGGGTGAGCTCGGATG
GGTGCAGGCTAAGAAAGAAGAGAATGACGGGACAACCATCAAGACGACTG
AAATGAAATTTCATTTTTTAATTTTTCGTTTTCCTCACCCTCTTCATGTC
ATTTATTCGCGTGGGCTTTGAAACATAGACACACGAAGTCGTGCTTCTAA
AAGTAGAGATTCGTGAGCAAAAACAACGTTTGCTCACTTTCCTGCCTCTT
CCTCTGCCTCTCCGTCTTCCATTTCCTCTACCTCTTTCTATATTCTCCCT
CTTCCTCTTCCTCCTCTTTCTCCTCCTCTTCTTCCTCTTATACGTTCTCT
TTTTCCCCGTGTTTCCTTCCTTCTGGACATATGTCGTTGCCCTTGGTTAG
TCAACGCCGTGGACTCTGACTGTCATCCCCGACCTCCTACCAGTCACATA
CAATTTTG
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protein sequence of NO06G02130.1

>NO06G02130.1-protein ID=NO06G02130.1-protein|Name=NO06G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MSWLPSRVLPQKRSGNIQRHNIQLSHSLRLSHTPYSAALTAASMQIFVKT
LTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLS
DYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKNPRG
RAKKRVLYSRRFLNVATGVGGKRLGPNSNADKMQK*
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Synonyms
Publications