NO06G02120, NO06G02120 (gene) Nannochloropsis oceanica

Overview
NameNO06G02120
Unique NameNO06G02120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1664
Alignment locationchr6:619738..621401 +

Link to JBrowse

Properties
Property NameValue
DescriptionWd repeat containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:619738..621401 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR037866Swd3-like
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Homology
BLAST of NO06G02120 vs. NCBI_GenBank
Match: EWM26217.1 (wd repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 181.4 bits (459), Expect = 6.300e-42
Identity = 236/331 (71.30%), Postives = 260/331 (78.55%), Query Frame = 0
Query:   95 CTPPSGPYRSAGVLGRRCKAVSSLKFSGNGQLLAAASADTTITIWDPIKRTQVRELKGGHTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGQEMGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVKWAPNGEYVLVSSLDSMIRLWGMRSPSRVVKTYQGHRNERLCMSAAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVLSLAVHPSRGVLASGGTSGDGVIRLW 426
            C P +GPY++AG LG++ +AVSSLKFSG+G+LLAAASADTTI+IWDP KR  VRELKGG   XXXXXXXXXXXXXXXXXXXXXXXXXXXX TGQE+G+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   V++APNG  VLVS+LDS +RLW + SPS V KTYQGH+N RLC  A +                                 V SGSEDGKVY+WDV++   VQ LGGH+ AVLSLA HP+ GVLASGGT+ D  IRLW
Sbjct:   81 CAPEAGPYQAAGSLGKQRRAVSSLKFSGSGELLAAASADTTISIWDPKKRLLVRELKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGQELGRFIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHVRYAPNGRSVLVSTLDSTVRLWKVASPSAVTKTYQGHQNLRLCTFACY--------------CAPDGAAASGQGHKNGPQYVSSGSEDGKVYVWDVQSQALVQTLGGHQDAVLSLAAHPTDGVLASGGTTADRSIRLW 397          
BLAST of NO06G02120 vs. NCBI_GenBank
Match: ADD95799.1 (GF13915 [uncultured organism MedDCM-OCT-S08-C3] >ADD96407.1 GF13915 [uncultured organism MedDCM-OCT-S09-C25])

HSP 1 Score: 108.2 bits (269), Expect = 6.800e-20
Identity = 55/138 (39.86%), Postives = 72/138 (52.17%), Query Frame = 0
Query:  288 VKWAPNGEYVLVSSLDSMIRLWGMRSPSRVVKTYQGHRNERLCMSAAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVLSLAVHPSRGVLASGGTSGDGVIRLW 426
            VK++PNG Y+LV +LD  +RLW + +PSR VKTYQGH N   C+ + F                                 VVSGSED  VYLW ++    VQ L GH   VLS++ HP+   +ASGG+  D  +RLW
Sbjct:   98 VKYSPNGRYILVGTLDDRLRLWNVSNPSRCVKTYQGHTNRSFCIFSTF------------------------STTHTRTPLVVSGSEDKSVYLWHLQNRSIVQKLEGHTDTVLSVSCHPTEHRIASGGSGQDKTVRLW 211          
BLAST of NO06G02120 vs. NCBI_GenBank
Match: PSN64379.1 (WD40 repeat-like protein [Corynespora cassiicola Philippines])

HSP 1 Score: 97.1 bits (240), Expect = 1.600e-16
Identity = 55/139 (39.57%), Postives = 74/139 (53.24%), Query Frame = 0
Query:  288 VKWAPNGEYVLVSSLDSMIRLWG-MRSPSRVVKTYQGHRNERLCMSAAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVLSLAVHPSRGVLASGGTSGDGVIRLW 426
            V ++PNG+YVL  +LDS IRLW  +    + VKTYQGH N+R  +S AF                                 V SGSEDG++ LWDV +   +Q L GH  AVLS+A HP++ ++ASGG   D  +R+W
Sbjct:  208 VIFSPNGKYVLAWTLDSCIRLWNYIEGKGKCVKTYQGHINKRYSLSGAF--------------------GTYGGQPPYQYAFVASGSEDGEIVLWDVSSKNVLQRLEGHSEAVLSVATHPTQELIASGGL--DRTVRIW 324          
BLAST of NO06G02120 vs. NCBI_GenBank
Match: XP_012397298.1 (WD repeat-containing protein 5-like [Sarcophilus harrisii])

HSP 1 Score: 96.3 bits (238), Expect = 2.700e-16
Identity = 49/142 (34.51%), Postives = 70/142 (49.30%), Query Frame = 0
Query:  288 VKWAPNGEYVLVSSLDSMIRLWGMRSPSRVVKTYQGHRNERLCMSAAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVLSLAVHPSRGVLASGGTSGDGVIRLWCTKE 430
            VK+ PNGEY+L+++LD+ ++LW      + +KTY GH+NE+ C+ A F                                 +VSGSED  VY+W++ T   VQ L GH   V+S A HP   ++AS     D  I+LW   E
Sbjct:  215 VKFTPNGEYILIATLDNTLKLWDF-GKGKCLKTYTGHKNEKYCIFANF--------------------------SETNPQQIVSGSEDNIVYIWNIDTEEIVQKLYGHTDTVISTACHPKESIIASAALEKDKTIKLWKNSE 329          
BLAST of NO06G02120 vs. NCBI_GenBank
Match: OAL44971.1 (WD40 repeat-like protein [Pyrenochaeta sp. DS3sAY3a])

HSP 1 Score: 95.9 bits (237), Expect = 3.500e-16
Identity = 72/151 (47.68%), Postives = 90/151 (59.60%), Query Frame = 0
Query:  288 VKWAPNGEYVLVSSLDSMIRLWG-MRSPSRVVKTYQGHRNERLCMSAAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVLSLAVHPSRGVLASGGTSGDGVIRLWCTKEEAQEVLME 438
            V+++PNG+YVL  +LDS IRLW  +    + VKTYQGH NER  +S AF          XXXXXXXXXXXXXXX        + SGSEDG + LWDV +   +Q L GH  AVLS+  HP+  ++AS G   D  +RL    EE  E  +E
Sbjct:  283 VRFSPNGKYVLAWTLDSSIRLWNYIDGKGKCVKTYQGHANERFSLSGAF----GTYLTVXXXXXXXXXXXXXXXPAHVEYAFIASGSEDGSIVLWDVSSKNVLQRLDGHSDAVLSVDTHPTEKIIASAGL--DRTVRLNGLGEEDMETDLE 427          
BLAST of NO06G02120 vs. NCBI_GenBank
Match: KOB58077.1 (Will die slowly, partial [Operophtera brumata])

HSP 1 Score: 94.4 bits (233), Expect = 1.000e-15
Identity = 47/138 (34.06%), Postives = 71/138 (51.45%), Query Frame = 0
Query:  288 VKWAPNGEYVLVSSLDSMIRLWGMRSPSRVVKTYQGHRNERLCMSAAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVLSLAVHPSRGVLASGGTSGDGVIRLW 426
            VK++PNG+Y+L ++LD+ ++LW   S  + +KTY GH+NE+ C+ A F                                 +VSGSED  VY+W++++   VQ L GH   VL  A HP+  ++AS     D  I+LW
Sbjct:   25 VKFSPNGKYILAATLDNTLKLWDY-SRGKCLKTYNGHKNEKYCIFANF----------SVTGGKSPLFPILWVDPNVCLQWIVSGSEDNLVYIWNLQSKEIVQRLSGHTDTVLCTACHPTENIIASAALENDKTIKLW 151          
BLAST of NO06G02120 vs. NCBI_GenBank
Match: XP_007783252.1 (hypothetical protein W97_07432 [Coniosporium apollinis CBS 100218] >EON67935.1 hypothetical protein W97_07432 [Coniosporium apollinis CBS 100218])

HSP 1 Score: 94.0 bits (232), Expect = 1.300e-15
Identity = 51/142 (35.92%), Postives = 70/142 (49.30%), Query Frame = 0
Query:  288 VKWAPNGEYVLVSSLDSMIRLWGMRSPSRVVKTYQGHRNERLCMSAAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVLSLAVHPSRGVLASGGTSGDGVIRLWCTKE 430
            V+++PNG+YVL  +LDS +RLW      R VKTYQGH+NER  +  AF                                 + SGSEDG ++LWDV +   +Q L GH   V+ +  HPS   L SGG   D  +R+W + +
Sbjct:  295 VRFSPNGKYVLAWTLDSSVRLWNY-VEGRCVKTYQGHKNERFSLGGAF---------------------GTYGDVANPHAFIASGSEDGSIFLWDVSSKNVLQRLEGHDGPVMGVHTHPSERKLVSGGL--DKTVRVWVSDD 412          
BLAST of NO06G02120 vs. NCBI_GenBank
Match: ORY01341.1 (WD40-repeat-containing domain protein, partial [Clohesyomyces aquaticus])

HSP 1 Score: 94.0 bits (232), Expect = 1.300e-15
Identity = 51/143 (35.66%), Postives = 71/143 (49.65%), Query Frame = 0
Query:  288 VKWAPNGEYVLVSSLDSMIRLWG-MRSPSRVVKTYQGHRNERLCMSAAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVLSLAVHPSRGVLASGGTSGDGVIRLWCTKE 430
            V+++PNG+Y+L  +LDS +RLW  +    + VKTYQGH N +  +S AF                                 + SGSEDG + LWDV +   +Q L GH A VLS+  HP+   + SGG   D  +R+W  KE
Sbjct:  281 VRFSPNGKYILAWTLDSCVRLWNYIDGKGKCVKTYQGHENNKFSISGAF--------------------GTYGAEPPHQYAFIASGSEDGGIVLWDVSSKNVLQRLAGHSAPVLSVDTHPTEQAIVSGGL--DKTVRIWRYKE 401          
BLAST of NO06G02120 vs. NCBI_GenBank
Match: XP_003037535.1 (hypothetical protein SCHCODRAFT_47625 [Schizophyllum commune H4-8] >EFJ02633.1 hypothetical protein SCHCODRAFT_47625 [Schizophyllum commune H4-8])

HSP 1 Score: 91.7 bits (226), Expect = 6.600e-15
Identity = 48/138 (34.78%), Postives = 71/138 (51.45%), Query Frame = 0
Query:  288 VKWAPNGEYVLVSSLDSMIRLWGMRSPSRVVKTYQGHRNERLCMSAAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVLSLAVHPSRGVLASGGTSGDGVIRLW 426
            V++ PN ++VL S+ DS +RLW   + SR  KTY GH N   C+ + F                                 V+SGSED +VY+WD+++ + VQ L GHK  VL ++VHP++ +LA+     D  IR+W
Sbjct:  244 VRFTPNSKFVLASTQDSTVRLWNYHA-SRPAKTYTGHVNRTYCIPSCFA------------------------TSRTGERLVLSGSEDARVYIWDLQSRQLVQVLEGHKDVVLGVSVHPTKCMLATAAMEKDLTIRIW 356          
BLAST of NO06G02120 vs. NCBI_GenBank
Match: OCL04777.1 (WD40 repeat-like protein [Glonium stellatum])

HSP 1 Score: 91.3 bits (225), Expect = 8.600e-15
Identity = 51/146 (34.93%), Postives = 71/146 (48.63%), Query Frame = 0
Query:  288 VKWAPNGEYVLVSSLDSMIRLWG-MRSPSRVVKTYQGHRNERLCMSAAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVLSLAVHPSRGVLASGGTSGDGVIRLWCTKEEAQ 433
            V ++PNG+Y+L  +LDS IRLW  +    R VKTYQGH N +  +S AF                                 V SGSED  + LWDV +   +Q L GH   VL +  HP++ ++ SGG   D  +R+W + E+ Q
Sbjct:  287 VCFSPNGKYILAWTLDSCIRLWNYVEGKGRCVKTYQGHTNNKYSISGAF---------------------GVYGCPPCQYAFVASGSEDKTIVLWDVSSKNVMQRLEGHTGVVLGVDTHPTQAIIVSGG--ADRTVRIWRSDEDMQ 409          
The following BLAST results are available for this feature:
BLAST of NO06G02120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26217.16.300e-4271.30wd repeat containing protein [Nannochloropsis gadi... [more]
ADD95799.16.800e-2039.86GF13915 [uncultured organism MedDCM-OCT-S08-C3] >A... [more]
PSN64379.11.600e-1639.57WD40 repeat-like protein [Corynespora cassiicola P... [more]
XP_012397298.12.700e-1634.51WD repeat-containing protein 5-like [Sarcophilus h... [more]
OAL44971.13.500e-1647.68WD40 repeat-like protein [Pyrenochaeta sp. DS3sAY3... [more]
KOB58077.11.000e-1534.06Will die slowly, partial [Operophtera brumata][more]
XP_007783252.11.300e-1535.92hypothetical protein W97_07432 [Coniosporium apoll... [more]
ORY01341.11.300e-1535.66WD40-repeat-containing domain protein, partial [Cl... [more]
XP_003037535.16.600e-1534.78hypothetical protein SCHCODRAFT_47625 [Schizophyll... [more]
OCL04777.18.600e-1534.93WD40 repeat-like protein [Glonium stellatum][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000249NSK000249Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02120.1NO06G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640827gene_6524Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g37gene4296Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02120.1NO06G02120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02120 ID=NO06G02120|Name=NO06G02120|organism=Nannochloropsis oceanica|type=gene|length=1664bp
CTTGATGATATAATAGAAGCCTCAACGCGCAGCCCCATTGTCACTCAATA
GGCTGTGATGGACACCCACTGACAACTTCATCCACGCACACACGTGCAAA
GCACAGACATGAGCAATGAGGAACCGCCACCACTGGCGCCATCGCAACAA
CCGCAGCCACCACAAACGCACATGCCATCTACTTCCGCTCAACCTCCTTC
TCCCTCCATGTCGTTACACGATGCTGCCACCTCTGCTGCTGCCGCGCAGG
AGGGCACCAGACCACCACAACCGGCACAAGATTCAAGAACAGCATCAGCA
TCAGCTTCAGCTGATGGCAAAGGAGAAGAATATGAGACGCACCAAAAGCG
GCATGCGGAGGAAGACGACGACGATCAAGGTCAATGGCATTGCACACCAC
CCTCAGGGCCCTACCGATCTGCCGGTGTACTAGGACGACGATGCAAGGCG
GTCTCTTCTCTTAAATTCTCCGGCAATGGTCAGCTACTGGCAGCAGCCTC
GGCCGACACAACCATAACTATTTGGGACCCCATCAAACGGACGCAAGTCC
GTGAGCTGAAAGGAGGGCACACCCATGGTGTCTCGGACGTAGCCTGGGCC
CGCGATAGCTCCTACCTCGCCACGGGCTCCGACGACAAGACGATTCGAAT
CTGGGACACAGAGACTGGACAGGAAATGGGGAAAATGCAGGGGCATACAG
GGTACGTGTTTTGCGTTGCATTCAATCCTCAAGGCTCTTTATTGGCTTCG
GGCTCTGAGGACGAAAACGTGAAATTATGGGATTTACGTACCGGTGGGTG
CTTAAAGACGTTGGAGGCTCATGCGGAGCCGGTCACAGGGGTTGACTTCA
ATGGAGAGGGGACTTGCCTAGTCAGTGGGAGTTATGACGGGTTGGTGCGG
CTGTGGGATGCTGGGATGGGCCAGTGTCTGAAGACCATGTTTGCCGAAGG
GAGTCCTGCGGTTGGTTGTGTGAAGTGGGCACCGAATGGCGAGTACGTGT
TGGTGTCCTCATTGGACTCGATGATCAGGCTTTGGGGGATGAGGAGCCCG
AGTCGTGTGGTGAAGACGTATCAAGGGCATCGAAACGAGAGGTTGTGTAT
GTCGGCGGCGTTTGTGTATTTGCAGGGGCAGGGGAAGCACCGACACAAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGTTTGTGGTGAGTGGATCGGAGGATGGCAAAGTATACTTATG
GGATGTACGTACTGGGAGGTTCGTGCAGGCCTTAGGAGGGCATAAGGCGG
CGGTGTTGAGCTTGGCTGTTCATCCTTCTCGAGGGGTGCTGGCCTCGGGG
GGGACAAGCGGGGATGGCGTGATCCGGTTGTGGTGCACGAAGGAGGAGGC
GCAAGAGGTGTTGATGGAGCAAAACGGTGGTTGTGGAGGAGGGAGAGAAG
GGGGTGGTGTGGAAATGGAGCTTGACAGTCTAAACTAGTCGAAGGTTTGT
ATGTATAGGGGAAGTAAGAGCTCAATGGTGTGGGAAGGAGGAAATGGATG
CGAGTGCATCAGGGGCGGCGCAAAGGAAGGTAAATGATCGAAAATGGGAG
GTAGTTGAAAATTGACTTCAATTTTCCAACATAAAAAAAGAAGCAAAAAG
CATACATATCTTGA
back to top

protein sequence of NO06G02120.1

>NO06G02120.1-protein ID=NO06G02120.1-protein|Name=NO06G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MSNEEPPPLAPSQQPQPPQTHMPSTSAQPPSPSMSLHDAATSAAAAQEGT
RPPQPAQDSRTASASASADGKGEEYETHQKRHAEEDDDDQGQWHCTPPSG
PYRSAGVLGRRCKAVSSLKFSGNGQLLAAASADTTITIWDPIKRTQVREL
KGGHTHGVSDVAWARDSSYLATGSDDKTIRIWDTETGQEMGKMQGHTGYV
FCVAFNPQGSLLASGSEDENVKLWDLRTGGCLKTLEAHAEPVTGVDFNGE
GTCLVSGSYDGLVRLWDAGMGQCLKTMFAEGSPAVGCVKWAPNGEYVLVS
SLDSMIRLWGMRSPSRVVKTYQGHRNERLCMSAAFVYLQGQGKHRHKQQQ
QQQQQQQQQQQQQQQQQFVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVL
SLAVHPSRGVLASGGTSGDGVIRLWCTKEEAQEVLMEQNGGCGGGREGGG
VEMELDSLN*
back to top
Synonyms
Publications