NO06G02110, NO06G02110 (gene) Nannochloropsis oceanica

Overview
NameNO06G02110
Unique NameNO06G02110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1295
Alignment locationchr6:618247..619541 -

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Properties
Property NameValue
DescriptionHistone family protein dna-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:618247..619541 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR010992IHF-like_DNA-bd_dom
IPR000119Hist_DNA-bd_bac
Homology
[Close]
BLAST of NO06G02110 vs. NCBI_GenBank
Match: EWM26240.1 (histone family protein dna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 172.6 bits (436), Expect = 9.000e-40
Identity = 98/139 (70.50%), Postives = 110/139 (79.14%), Query Frame = 0 
Query:    1 MLRQTSSFFLLVLALLACTVTAFFHIAAPVTPGH---VLFATKAETSLKKTELLDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFXXXXXXXXXXXXPRTGEPIQVPETTVATFAPSKVLKDKVNHR 137
            MLR ++SFFLL LAL A  + AF H+  P TP     ++ ATKAETSLKKTELLDQVV+K+GVTK +ADKVL+AVTDSIAES+ADGKKVSLVGFGSF            PRTGEPIQVPETTVATFAPSKVLKDK+NHR
Sbjct:    1 MLRSSTSFFLLFLALTASIIHAFLHVNIP-TPSRGQPLMMATKAETSLKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKINHR 138
[Close]
BLAST of NO06G02110 vs. NCBI_GenBank
Match: WP_026222168.1 (HU family DNA-binding protein [filamentous cyanobacterium ESFC-1])

HSP 1 Score: 81.3 bits (199), Expect = 2.700e-12
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0 
Query:   45 LKKTELLDQVVKKT-GVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFXXXXXXXXXXXXPRTGEPIQVPETTVATFAPSKVLKDKV 134
            + K +L+D+VV+K  G+TK  AD +LSA+ ++I ES+A+G KV+LVGFG+F            P+TGEP+Q+P TTV  F+  K  K+KV
Sbjct:    1 MNKGQLVDEVVQKVDGMTKKQADAILSAILETIQESVAEGNKVTLVGFGTFEPRKRQAREGRNPKTGEPMQIPATTVPAFSAGKFFKEKV 90
[Close]
BLAST of NO06G02110 vs. NCBI_GenBank
Match: OWY64665.1 (DNA-binding protein [cyanobacterium TDX16])

HSP 1 Score: 81.3 bits (199), Expect = 2.700e-12
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 0 
Query:   45 LKKTELLDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFXXXXXXXXXXXXPRTGEPIQVPETTVATFAPSKVLKDKV 134
            + K EL+D +  KT VTK  AD +L+A+T++I E ++ G KVSL+GFGSF            P+TGE +Q+P T V  FA  K+ KDKV
Sbjct:    1 MNKAELVDVIASKTNVTKKEADSILNAITETIVEVVSSGDKVSLIGFGSFERRERQAKEGRNPKTGEKMQIPATRVPVFAAGKLFKDKV 89
[Close]
BLAST of NO06G02110 vs. NCBI_GenBank
Match: WP_106166333.1 (HU family DNA-binding protein [Chroococcidiopsis cubana] >PSB65775.1 DNA-binding protein [Chroococcidiopsis cubana CCALA 043])

HSP 1 Score: 80.9 bits (198), Expect = 3.500e-12
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 0 
Query:   45 LKKTELLDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFXXXXXXXXXXXXPRTGEPIQVPETTVATFAPSKVLKDKV 134
            + KTEL+D +  KT VTK  AD +LSA+T++I E ++ G KVSLVGFGSF            P+TGE +Q+  T V  FA  K+ KDKV
Sbjct:    1 MNKTELVDAIASKTNVTKREADTILSAITETIVEVVSSGDKVSLVGFGSFEPRQRQAKEGRNPKTGEKMQIRATRVPVFAAGKLFKDKV 89
[Close]
BLAST of NO06G02110 vs. NCBI_GenBank
Match: PSP17856.1 (DNA-binding protein [Cyanobacteria bacterium QS_8_64_29])

HSP 1 Score: 80.1 bits (196), Expect = 6.000e-12
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 0 
Query:   45 LKKTELLDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFXXXXXXXXXXXXPRTGEPIQVPETTVATFAPSKVLKDKVNHRT 138
            + K +L+DQV  K  VTK  AD VL+A  D+I E+++DG+KV+LVGFGSF            P+TG+ +Q+P T V  F+  K+ KDKV+ ++
Sbjct:    1 MNKGDLVDQVADKATVTKKQADAVLTAALDTIMEAVSDGEKVTLVGFGSFEPRERKSREGRNPKTGDKMQIPSTRVPAFSAGKLFKDKVSPKS 93
[Close]
BLAST of NO06G02110 vs. NCBI_GenBank
Match: WP_088894649.1 (HU family DNA-binding protein [Leptolyngbya ohadii])

HSP 1 Score: 79.7 bits (195), Expect = 7.900e-12
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 0 
Query:   45 LKKTELLDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFXXXXXXXXXXXXPRTGEPIQVPETTVATFAPSKVLKDKVN 135
            + K EL+D++ +K  VTK  AD VL+A  DSI E++A+G KV+LVGFGSF            P+TGE + +PETT   F+  K+ K+KV+
Sbjct:    1 MNKGELVDKIAEKASVTKKEADAVLTAAIDSIMEAVAEGDKVTLVGFGSFEPRKRQAREGRNPKTGEAMTIPETTAPAFSAGKMFKEKVS 90
[Close]
BLAST of NO06G02110 vs. NCBI_GenBank
Match: WP_009555061.1 (HU family DNA-binding protein [Oscillatoriales cyanobacterium JSC-12] >EKQ70485.1 bacterial nucleoid DNA-binding protein [Oscillatoriales cyanobacterium JSC-12])

HSP 1 Score: 79.3 bits (194), Expect = 1.000e-11
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 0 
Query:   45 LKKTELLDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFXXXXXXXXXXXXPRTGEPIQVPETTVATFAPSKVLKDKV 134
            + K+EL+D +  +  +TK  AD VL+AV D+I E+++ G+KV+LVGFG+F            P TG+PIQ+P TTV  F+  K+ K+KV
Sbjct:    1 MNKSELVDAIASRASITKKDADNVLTAVVDAIMEAVSSGEKVTLVGFGTFEARQRQAREGRNPSTGKPIQIPATTVPAFSAGKLFKEKV 89
[Close]
BLAST of NO06G02110 vs. NCBI_GenBank
Match: WP_008313254.1 (HU family DNA-binding protein [Leptolyngbya sp. PCC 6406])

HSP 1 Score: 79.3 bits (194), Expect = 1.000e-11
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 0 
Query:   45 LKKTELLDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFXXXXXXXXXXXXPRTGEPIQVPETTVATFAPSKVLKDKV 134
            + K EL+D+V +KT VTK  AD VL+A  D+I E++A+G+KV+LVGFGSF            P+TGE + +P TTV  F+  K  K+KV
Sbjct:    1 MNKGELVDKVTEKTDVTKKQADAVLTAAIDAIIETVAEGEKVTLVGFGSFEPRQRKEREGRNPKTGETMVIPATTVPAFSAGKQFKEKV 89
[Close]
BLAST of NO06G02110 vs. NCBI_GenBank
Match: WP_006617078.1 (HU family DNA-binding protein [Arthrospira platensis] >BAI92004.1 DNA-binding protein HU [Arthrospira platensis NIES-39] >KDR59231.1 DNA-binding protein [Arthrospira platensis str. Paraca] >AMW29605.1 DNA-binding protein [Arthrospira platensis YZ])

HSP 1 Score: 79.3 bits (194), Expect = 1.000e-11
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 0 
Query:   45 LKKTELLDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFXXXXXXXXXXXXPRTGEPIQVPETTVATFAPSKVLKDKVNHR 137
            + K EL+D V +K GVTK  AD VLSA  +S+ +++A  +KV+LVGFGSF            P+TGE + +PET V  F+  K+ K+KV H+
Sbjct:    1 MNKGELIDAVAEKAGVTKKQADAVLSAALESVIDAVATQEKVTLVGFGSFEARKRKAREGRNPQTGEKMDIPETWVPAFSAGKMFKEKVAHK 92
[Close]
BLAST of NO06G02110 vs. NCBI_GenBank
Match: WP_006518711.1 (HU family DNA-binding protein [Leptolyngbya sp. PCC 7375] >EKU97534.1 bacterial nucleoid DNA-binding protein [Leptolyngbya sp. PCC 7375])

HSP 1 Score: 78.6 bits (192), Expect = 1.800e-11
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 0 
Query:   45 LKKTELLDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFXXXXXXXXXXXXPRTGEPIQVPETTVATFAPSKVLKDKV 134
            + K ELLD V +K GV+K +AD V+SA  DSI E+++ G KV+LVGFGSF            P+TGE + +P TTV  F+  K  K+KV
Sbjct:    1 MNKGELLDTVAEKAGVSKKVADAVVSATIDSIMEAVSGGDKVTLVGFGSFEPRDRKQREGRNPKTGETMTIPATTVPAFSAGKAFKEKV 89
The following BLAST results are available for this feature:
BLAST of NO06G02110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26240.19.000e-4070.50histone family protein dna-binding protein [Nannoc... [more]
WP_026222168.12.700e-1246.67HU family DNA-binding protein [filamentous cyanoba... [more]
OWY64665.12.700e-1246.07DNA-binding protein [cyanobacterium TDX16][more]
WP_106166333.13.500e-1248.31HU family DNA-binding protein [Chroococcidiopsis c... [more]
PSP17856.16.000e-1244.09DNA-binding protein [Cyanobacteria bacterium QS_8_... [more]
WP_088894649.17.900e-1245.56HU family DNA-binding protein [Leptolyngbya ohadii... [more]
WP_009555061.11.000e-1143.82HU family DNA-binding protein [Oscillatoriales cya... [more]
WP_008313254.11.000e-1147.19HU family DNA-binding protein [Leptolyngbya sp. PC... [more]
WP_006617078.11.000e-1144.57HU family DNA-binding protein [Arthrospira platens... [more]
WP_006518711.11.800e-1147.19HU family DNA-binding protein [Leptolyngbya sp. PC... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000250NSK000250Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02110.1NO06G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597248gene_6523Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g36gene4297Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02110.1NO06G02110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02110 ID=NO06G02110|Name=NO06G02110|organism=Nannochloropsis oceanica|type=gene|length=1295bp
ACAACAGCCCACCACCTCCCCGTCATCACCATGCTTCGCCAGACGTCTTC
CTTCTTTCTTCTGGTCCTGGCCTTGTTGGCATGCACTGTCACTGCCTTCT
TCCACATCGCAGCGCCCGTGACTCCCGGTCATGTTCTGTTCGCCACTAAG
GCCGAGACGgtaagtgtttgtggggaggtaaggggccgaggaagcgaggg
gttggttgcccaagcggaaggagggggttgagcgttgaaggaaacttcta
cctcgtcttgagatgcgctgccatttggtgctcaggttacacacacatct
cacatctgtaatatctgtagTCTTTGAAGAAGACGGAGCTCTTGGACCAG
GTGGTGAAGAAGACGGGTGTGACCAAGGTCATGGCCGACAAGGTCCTCTC
GGCCGTCACTGACTCTATCGCTGAGTCCTTGGCTGATGGGAAGAAGGgta
agagtaaggagaaatactatggcttatttttgacataagagacgaggagg
agtgacgtggcgtgagtgtggctgactggcatgcttgaattcctatccgg
aaaccgagatatggccagctcgcccgtacgaaagcgactatgcctgtgcc
ctcttctaccttcgttattcctcttgcgtacacgcttcgggctaaatatt
aaattattcctatccttgtcctttattaacgtagTGTCGCTTGTCGGCTT
TGGGTCCTTTGGCACGTCCGTGAGGTCAGCCCGCACGGCCCGCAACCCAC
GAACTGGCGAGCCCATCCAGGTGCCCGAGACGACTGTGGCCACCTTCGCG
CCCTCCAAGGTGCTCAAGGACAAGgtaaaggacgaccccaatctgtctat
gtcaccaaattgatattgttgtttaatttgcagttctacccgcggtttct
atgcgtgcatattatgtgaatgtgtgtgtccggaggagattaatcctctc
ttgccctcctcattcgcctcctaaaaacattcttcctctcgatctacttt
tattttttccgcataagGTCAACCATCGCACGCCCGAAAAATAGAAGAAC
AGTCATTACGCAAAAGTTGGAAGACCGGCGGCAGGGGGGAAGGGAAGGAT
GGAAGGAAGGATAGAGGGAGGGAATCAGGGAGGGAGGGAAAGAAGCAAGA
AAGCAACACTTGATAAAATGACGTAATCGCGTTTAACTGTCGTTTCCTCA
GCTGTTAGTTTCACTCAGTTAGTCGTGCATTCAAGCGAAAACGGCGACGA
AAATGACGATGTCACACACACACATCCCATGCCCACATAACCCCG
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protein sequence of NO06G02110.1

>NO06G02110.1-protein ID=NO06G02110.1-protein|Name=NO06G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MLRQTSSFFLLVLALLACTVTAFFHIAAPVTPGHVLFATKAETSLKKTEL
LDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFGTSVRS
ARTARNPRTGEPIQVPETTVATFAPSKVLKDKVNHRTPEK*
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Synonyms
Publications