NO06G02070, NO06G02070 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO06G02070 vs. NCBI_GenBank
Match: EWM26207.1 (ribosome maturation factor rimp [Nannochloropsis gaditana]) HSP 1 Score: 589.0 bits (1517), Expect = 1.300e-164 Identity = 312/455 (68.57%), Postives = 351/455 (77.14%), Query Frame = 0 Query: 1 MVGWSHCLALTLGLASSARAFVPSLPAGGIGVRPALTTDLATTPHPHHCACPTCTRNTGRVGEAIAHPGARRRAEAXXXXXXXXXXXXXXXXXXXXXXDANPVEFDKYGFPIPPKKPAKELEEEHRKWLESIEPPEGFPEFDASKEGFTVEEIENDNLIDPAAAXXXXXXXXXXXXXXXXXXXXXPQENEPDWDNIPEYGGEFLGMDDPLDAPWRRQGEELIRAAVVEAGFDVYDVTWHLHHVNVDITRGE--DCHEGGEAGMERGSLSSDEIVDVTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLPEAMHEIDDFEVMDEGWANLFVDGKVPGTIQVEYDMPGLVTLGKGVRMVEPEYYVPPAIPDEDGEEMMDDGEEYSLEEEEE 454 MVGWS+CL LTLGLASS AFVP+ I P L D ATT HPH C CP + G V + PGARRR EA XXXXXXXXXXXXXXXDANP+EFDKYGFPIPP+KPAKELEEEHR+W+ESIEPPEGFPEFDA+KEGF+ EE+END L+DPA A QENEPDWDNIPEYGGEFLGMDDPLDAPWR E++IR AV EAG+ YDVTWHLHHVNVDITR + + GE + GSLSSDEIV+VTRA+EEAL PHD L+ILQRFHLCVGTPGAKD+LTTEREFQAFRG+EV V + +PINE+ + NVRVGRL+ER P+ TILNVKGKNVTI T M+ E+RLP AMHE DDFEVM+EGWANLFVDGKVP T+ VEY+MPGL TLGKGV+MVEPEYYVPP++PDEDGEE +GEEY EE+E Sbjct: 32 MVGWSNCLTLTLGLASSVHAFVPAAHLKAICGNPVLHKDYATTTHPHVCTCPARAHSPGNVDGLQSTPGARRRVEALVLMARGXXXXXXXXXXXXXXXDANPIEFDKYGFPIPPQKPAKELEEEHREWMESIEPPEGFPEFDAAKEGFSPEEMENDPLLDPAVAVTTAETGAATVIDVTASEEGAGQENEPDWDNIPEYGGEFLGMDDPLDAPWRLHAEDVIRGAVTEAGYHTYDVTWHLHHVNVDITRQDVGNVENEGEGVADAGSLSSDEIVEVTRAVEEALLPHDNHLRILQRFHLCVGTPGAKDVLTTEREFQAFRGYEVQVSVTNPINESPTPNVRVGRLLERNPMHTILNVKGKNVTIPTGMVVEVRLPSAMHEADDFEVMEEGWANLFVDGKVPSTVSVEYEMPGLTTLGKGVKMVEPEYYVPPSLPDEDGEE--GEGEEYVGGEEDE 484
BLAST of NO06G02070 vs. NCBI_GenBank
Match: CBJ29721.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 132.5 bits (332), Expect = 3.300e-27 Identity = 70/197 (35.53%), Postives = 111/197 (56.35%), Query Frame = 0 Query: 186 PQENEPDWDNIPEYGGEFLGMDDPLDAPWRRQGEELIRAAVVEAGFDVYDVTWHLHHVNVDITRGEDCHEGGEAGMERGS-LSSDEIVDVTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLPEAMHEIDD 382 P ++E D+ PE G GMDDP DAPWR + E+++R V G YD+ W H + V +TR E G+ +E + + SD+++ + + AL + +L +L R L V TPGAKD+LTT+++F+A++GFEV V P + + G+L+ER + ++ G+ V I ++ E+RLP A+ E D Sbjct: 174 PDDDEKDF---PEVAGVIAGMDDPADAPWRLEAEKIVRDQVQACGLTCYDILWTFHRLEVTVTRAE-----GDGPIEEAAYVDSDKLMQAIKGVNAALEAREEELFVLGRHELVVATPGAKDVLTTDKQFKAYKGFEVIVKAGGPFKKKRELK---GKLLERTFDELMIMKAGRKVRIPLALVDEVRLPPALVEAGD 359
BLAST of NO06G02070 vs. NCBI_GenBank
Match: GAX27905.1 (hypothetical protein FisN_21Hh255 [Fistulifera solaris]) HSP 1 Score: 66.6 bits (161), Expect = 2.200e-7 Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 0 Query: 274 VTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLP 374 + AI +AL + +L+IL R + + +PG D++ T+R+F A+RG V V K P + S +G++++R + ILN KG+ VT+ + + +RLP Sbjct: 277 IADAILKALKEEEDRLQILTRHEVVLSSPGPPDVIETQRQFDAYRGTRVMVETKDPFD---SNRTLLGKIVDRNSMDLILNQKGRMVTVPLNFVKCVRLP 373
BLAST of NO06G02070 vs. NCBI_GenBank
Match: GAX24643.1 (hypothetical protein FisN_21Lh255 [Fistulifera solaris]) HSP 1 Score: 66.2 bits (160), Expect = 2.900e-7 Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 0 Query: 274 VTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLP 374 + AI +AL + +L+IL R + + +PG D++ T+R+F A+RG V V K P + S +G++++R + ILN KG+ VT+ + + +RLP Sbjct: 277 IADAILKALKEEEDRLQILTRHEVVLSSPGPPDVIETQRQFDAYRGTRVLVETKDPFD---SNRTLLGKIVDRNSMDLILNQKGRMVTVPLNFVKCVRLP 373
BLAST of NO06G02070 vs. NCBI_GenBank
Match: XP_002182378.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46279.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 65.5 bits (158), Expect = 5.000e-7 Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 0 Query: 274 VTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLPEAMHEID 381 + AI + L + +L+IL R L + +PG D+L T+R+F A+R +V V + P N S G+L++R + I+N KG+ VTI + + +RLP HE++ Sbjct: 285 IANAILDVLGDAEEELQILSRHELILTSPGPVDVLETQRQFDAYRDKDVMVETQDPFN---SNRTLKGKLVDRNAMDLIINKKGRMVTIPLNFVKCVRLPP--HELN 386
BLAST of NO06G02070 vs. NCBI_GenBank
Match: CEM08839.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 64.7 bits (156), Expect = 8.500e-7 Identity = 42/171 (24.56%), Postives = 79/171 (46.20%), Query Frame = 0 Query: 206 MDDPLDAPWRRQGEELIRAAVVEAGFDVYDVTWHLHHVNVDITRGE--DCHEGGEAGMERGSLSSDEIVDVTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLPE 375 + D + W+ E+ IR V AGF ++++ W V V++ GE + + R + ++ +++D L + L + G D++ T++ F A RGF V+V L E + + + GRL E+ +LN+KG+ I +++ E+RL + Sbjct: 230 LGDNREVGWKSSIEDTIRQEVEGAGFGLHNIAWGGKGVMVEVQDGEFLEVTDQSLETCHRRTYTALQLLD-----------DKSSFGFLDKMDLTFASVGVSDVIDTDKAFNALRGFVVDVKL---FEEHKGKLIHTGRLQEKTDDHVVLNLKGRPFKIPIELVDEVRLSQ 386 The following BLAST results are available for this feature:
BLAST of NO06G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G02070 ID=NO06G02070|Name=NO06G02070|organism=Nannochloropsis oceanica|type=gene|length=1798bpback to top protein sequence of NO06G02070.1 >NO06G02070.1-protein ID=NO06G02070.1-protein|Name=NO06G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bpback to top Synonyms
Publications
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