NO06G02070, NO06G02070 (gene) Nannochloropsis oceanica

Overview
NameNO06G02070
Unique NameNO06G02070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1798
Alignment locationchr6:606255..608052 -

Link to JBrowse

Properties
Property NameValue
DescriptionRibosome maturation factor rimp
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:606255..608052 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO06G02070 vs. NCBI_GenBank
Match: EWM26207.1 (ribosome maturation factor rimp [Nannochloropsis gaditana])

HSP 1 Score: 589.0 bits (1517), Expect = 1.300e-164
Identity = 312/455 (68.57%), Postives = 351/455 (77.14%), Query Frame = 0
Query:    1 MVGWSHCLALTLGLASSARAFVPSLPAGGIGVRPALTTDLATTPHPHHCACPTCTRNTGRVGEAIAHPGARRRAEAXXXXXXXXXXXXXXXXXXXXXXDANPVEFDKYGFPIPPKKPAKELEEEHRKWLESIEPPEGFPEFDASKEGFTVEEIENDNLIDPAAAXXXXXXXXXXXXXXXXXXXXXPQENEPDWDNIPEYGGEFLGMDDPLDAPWRRQGEELIRAAVVEAGFDVYDVTWHLHHVNVDITRGE--DCHEGGEAGMERGSLSSDEIVDVTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLPEAMHEIDDFEVMDEGWANLFVDGKVPGTIQVEYDMPGLVTLGKGVRMVEPEYYVPPAIPDEDGEEMMDDGEEYSLEEEEE 454
            MVGWS+CL LTLGLASS  AFVP+     I   P L  D ATT HPH C CP    + G V    + PGARRR EA       XXXXXXXXXXXXXXXDANP+EFDKYGFPIPP+KPAKELEEEHR+W+ESIEPPEGFPEFDA+KEGF+ EE+END L+DPA A                      QENEPDWDNIPEYGGEFLGMDDPLDAPWR   E++IR AV EAG+  YDVTWHLHHVNVDITR +  +    GE   + GSLSSDEIV+VTRA+EEAL PHD  L+ILQRFHLCVGTPGAKD+LTTEREFQAFRG+EV V + +PINE+ + NVRVGRL+ER P+ TILNVKGKNVTI T M+ E+RLP AMHE DDFEVM+EGWANLFVDGKVP T+ VEY+MPGL TLGKGV+MVEPEYYVPP++PDEDGEE   +GEEY   EE+E
Sbjct:   32 MVGWSNCLTLTLGLASSVHAFVPAAHLKAICGNPVLHKDYATTTHPHVCTCPARAHSPGNVDGLQSTPGARRRVEALVLMARGXXXXXXXXXXXXXXXDANPIEFDKYGFPIPPQKPAKELEEEHREWMESIEPPEGFPEFDAAKEGFSPEEMENDPLLDPAVAVTTAETGAATVIDVTASEEGAGQENEPDWDNIPEYGGEFLGMDDPLDAPWRLHAEDVIRGAVTEAGYHTYDVTWHLHHVNVDITRQDVGNVENEGEGVADAGSLSSDEIVEVTRAVEEALLPHDNHLRILQRFHLCVGTPGAKDVLTTEREFQAFRGYEVQVSVTNPINESPTPNVRVGRLLERNPMHTILNVKGKNVTIPTGMVVEVRLPSAMHEADDFEVMEEGWANLFVDGKVPSTVSVEYEMPGLTTLGKGVKMVEPEYYVPPSLPDEDGEE--GEGEEYVGGEEDE 484          
BLAST of NO06G02070 vs. NCBI_GenBank
Match: CBJ29721.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 132.5 bits (332), Expect = 3.300e-27
Identity = 70/197 (35.53%), Postives = 111/197 (56.35%), Query Frame = 0
Query:  186 PQENEPDWDNIPEYGGEFLGMDDPLDAPWRRQGEELIRAAVVEAGFDVYDVTWHLHHVNVDITRGEDCHEGGEAGMERGS-LSSDEIVDVTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLPEAMHEIDD 382
            P ++E D+   PE  G   GMDDP DAPWR + E+++R  V   G   YD+ W  H + V +TR E     G+  +E  + + SD+++   + +  AL   + +L +L R  L V TPGAKD+LTT+++F+A++GFEV V    P  + +      G+L+ER   + ++   G+ V I   ++ E+RLP A+ E  D
Sbjct:  174 PDDDEKDF---PEVAGVIAGMDDPADAPWRLEAEKIVRDQVQACGLTCYDILWTFHRLEVTVTRAE-----GDGPIEEAAYVDSDKLMQAIKGVNAALEAREEELFVLGRHELVVATPGAKDVLTTDKQFKAYKGFEVIVKAGGPFKKKRELK---GKLLERTFDELMIMKAGRKVRIPLALVDEVRLPPALVEAGD 359          
BLAST of NO06G02070 vs. NCBI_GenBank
Match: GAX27905.1 (hypothetical protein FisN_21Hh255 [Fistulifera solaris])

HSP 1 Score: 66.6 bits (161), Expect = 2.200e-7
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query:  274 VTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLP 374
            +  AI +AL   + +L+IL R  + + +PG  D++ T+R+F A+RG  V V  K P +   S    +G++++R  +  ILN KG+ VT+  + +  +RLP
Sbjct:  277 IADAILKALKEEEDRLQILTRHEVVLSSPGPPDVIETQRQFDAYRGTRVMVETKDPFD---SNRTLLGKIVDRNSMDLILNQKGRMVTVPLNFVKCVRLP 373          
BLAST of NO06G02070 vs. NCBI_GenBank
Match: GAX24643.1 (hypothetical protein FisN_21Lh255 [Fistulifera solaris])

HSP 1 Score: 66.2 bits (160), Expect = 2.900e-7
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query:  274 VTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLP 374
            +  AI +AL   + +L+IL R  + + +PG  D++ T+R+F A+RG  V V  K P +   S    +G++++R  +  ILN KG+ VT+  + +  +RLP
Sbjct:  277 IADAILKALKEEEDRLQILTRHEVVLSSPGPPDVIETQRQFDAYRGTRVLVETKDPFD---SNRTLLGKIVDRNSMDLILNQKGRMVTVPLNFVKCVRLP 373          
BLAST of NO06G02070 vs. NCBI_GenBank
Match: XP_002182378.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46279.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 65.5 bits (158), Expect = 5.000e-7
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 0
Query:  274 VTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLPEAMHEID 381
            +  AI + L   + +L+IL R  L + +PG  D+L T+R+F A+R  +V V  + P N   S     G+L++R  +  I+N KG+ VTI  + +  +RLP   HE++
Sbjct:  285 IANAILDVLGDAEEELQILSRHELILTSPGPVDVLETQRQFDAYRDKDVMVETQDPFN---SNRTLKGKLVDRNAMDLIINKKGRMVTIPLNFVKCVRLPP--HELN 386          
BLAST of NO06G02070 vs. NCBI_GenBank
Match: CEM08839.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 64.7 bits (156), Expect = 8.500e-7
Identity = 42/171 (24.56%), Postives = 79/171 (46.20%), Query Frame = 0
Query:  206 MDDPLDAPWRRQGEELIRAAVVEAGFDVYDVTWHLHHVNVDITRGE--DCHEGGEAGMERGSLSSDEIVDVTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLPE 375
            + D  +  W+   E+ IR  V  AGF ++++ W    V V++  GE  +  +       R + ++ +++D                  L +  L   + G  D++ T++ F A RGF V+V L     E + + +  GRL E+     +LN+KG+   I  +++ E+RL +
Sbjct:  230 LGDNREVGWKSSIEDTIRQEVEGAGFGLHNIAWGGKGVMVEVQDGEFLEVTDQSLETCHRRTYTALQLLD-----------DKSSFGFLDKMDLTFASVGVSDVIDTDKAFNALRGFVVDVKL---FEEHKGKLIHTGRLQEKTDDHVVLNLKGRPFKIPIELVDEVRLSQ 386          
The following BLAST results are available for this feature:
BLAST of NO06G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM26207.11.300e-16468.57ribosome maturation factor rimp [Nannochloropsis g... [more]
CBJ29721.13.300e-2735.53conserved unknown protein [Ectocarpus siliculosus][more]
GAX27905.12.200e-734.00hypothetical protein FisN_21Hh255 [Fistulifera sol... [more]
GAX24643.12.900e-734.00hypothetical protein FisN_21Lh255 [Fistulifera sol... [more]
XP_002182378.15.000e-734.58predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CEM08839.18.500e-724.56unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000254NSK000254Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02070.1NO06G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597230gene_6518Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g31gene4301Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02070.1NO06G02070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02070 ID=NO06G02070|Name=NO06G02070|organism=Nannochloropsis oceanica|type=gene|length=1798bp
TGCGATGGCGAGGCGAGTGGCATTGCTTCGTCTTGTTGCACCAAGCCTCC
GCACAACACCCGGCAAACACTCGACCTCGCAGAAATGGCGTGCATGAAGA
GCTTTGAACAGTGGCGAGGAGACTACCTTGGCCCTGGCCGTATTTGCTTT
TTCTTGTTATCTTCACCATCTTTATCTCATTCATCCTATCTCTCCCCCTA
CAACCACATCATAGGGCAGCCCCCATCCCAGAAGTAGCCAAACATGGTCG
GCTGGAGCCATTGCTTGGCACTGACGCTGGGCCTGGCCTCGAGCGCTCGT
GCGTTTGTGCCGTCTCTACCCGCAGGTGGCATCGGCGTACGTCCTGCCCT
CACTACCGACCTGGCCACGACCCCCCATCCGCATCACTGCGCCTGTCCTA
CCTGTACACGGAACACGGGAAGGGTAGGAGAAGCCATCGCCCATCCCGGG
GCACGGAGAAGGGCCGAGGCCCTGGTGCTGATGGCGCGGGGCCGGCGAGG
ACGGGGTGGCGGAGGGTGGCAACGACGCCGGCGGCAGGATGCCAACCCAG
TAGAGTTTGACAAGTACGGTTTCCCCATTCCCCCCAAGAAACCCGCCAAA
GAATTGGAAGAGGAGCATCGGAAATGGCTAGAGTCAATTGAGCCTCCGGA
GGGCTTTCCAGAATTTGACGCGAGCAAAGAGGGGTTCACGGTGGAGGAGA
TAGAGAACGACAATTTGATTGATCCCGCAGCGGCTTACGCAGCGGCGGAG
GCAGCAACAGCAGCAGCAGCGGCGGCACAGGCGAGTGGAGAGGGGGCTCC
GCAGGAGAATGAGCCTGATTGGGATAATATTCCGGAGTATGGTGGGGAAT
TTCTGGGGATGGATGATCCGTTGGATGCGCCGTGGCGGAGGCAAGGGGAG
GAGTTGATTAGGGCGGCGGTGGTTGAGGCGGGCTTTGATGTTTATGACGT
GACTTGGCATTTGCATCATGTAAATGTGGATATTACAAGGGGAGAGGATT
GTCATGAGGGAGGGGAAGCAGGGATGGAAAGAGGGTCGTTGTCGTCGGAT
GAGATTGTGGACGTGACCAGAGCGATTGAAGAGGCATTGTTCCCTCATGA
TAGGCAGCTGAAGATTCTGCAGCGATTCCATTTGTGTGTGGGCACTCCGG
GGGCAAAAGATATATTGACGACGGAAAGAGAATTTCAGGCGTTTAGAGGC
TTTGAAGTGAATGTGCTGTTGAAGAGTCCGATTAATGAGACACAAAGTCA
GAATGTGCGTGTTGGGCGACTGATGGAACGAGGGCCTGTGCAGACAATAT
TGAATGTAAAGGGTAAAAATGTCACCATCCTCACGGATATGATCCATGAG
ATGCGCTTGCCGGAAGCAATGCACGAAATCGACGATTTCGAGGTGATGGA
CGAGGGTTGGGCGAATTTATTTGTGGATGGGAAGGTACCCGGAACGATAC
AGGTTGAGTATGACATGCCGGGCTTGGTGACCCTGGGTAAGGGGGTGAGG
ATGGTGGAGCCTGAGTATTATGTGCCGCCGGCTATTCCGGACGAGGACGG
GGAGGAGATGATGGATGATGGGGAGGAATACAGTTTAGAGGAGGAGGAGG
AGTAGAGGGGATGAGGGAGAGAGGGAGGAAAAGGGAGGGACGGTATAAAT
ATTCAATCAAACAAAGAGAGCGGCAGCAACAGAAGCAGCAGCTGCAGCAA
TTGCAGCAATAAAAACAACGAAGGAGGACCAAGAGCTTAGGAAAAAGTAG
AAAATGGAACTAAGTTTGATTGAGCGACAGACAATAGTGTGAGAGGAA
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protein sequence of NO06G02070.1

>NO06G02070.1-protein ID=NO06G02070.1-protein|Name=NO06G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MVGWSHCLALTLGLASSARAFVPSLPAGGIGVRPALTTDLATTPHPHHCA
CPTCTRNTGRVGEAIAHPGARRRAEALVLMARGRRGRGGGGWQRRRRQDA
NPVEFDKYGFPIPPKKPAKELEEEHRKWLESIEPPEGFPEFDASKEGFTV
EEIENDNLIDPAAAYAAAEAATAAAAAAQASGEGAPQENEPDWDNIPEYG
GEFLGMDDPLDAPWRRQGEELIRAAVVEAGFDVYDVTWHLHHVNVDITRG
EDCHEGGEAGMERGSLSSDEIVDVTRAIEEALFPHDRQLKILQRFHLCVG
TPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQ
TILNVKGKNVTILTDMIHEMRLPEAMHEIDDFEVMDEGWANLFVDGKVPG
TIQVEYDMPGLVTLGKGVRMVEPEYYVPPAIPDEDGEEMMDDGEEYSLEE
EEE*
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Synonyms
Publications