NO06G02040, NO06G02040 (gene) Nannochloropsis oceanica

Overview
NameNO06G02040
Unique NameNO06G02040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1495
Alignment locationchr6:599634..601128 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:599634..601128 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004843thiol-dependent ubiquitin-specific protease activity
GO:0004843thiol-dependent ubiquitin-specific protease activity
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
GO:0016579protein deubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR006155Josephin
Homology
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BLAST of NO06G02040 vs. NCBI_GenBank
Match: EWM26212.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 186.8 bits (473), Expect = 8.400e-44
Identity = 102/225 (45.33%), Postives = 131/225 (58.22%), Query Frame = 0 
Query:    8 PPYHERQRRLCCGAHTLNNLFQYKWVDSSAMDALATSLAVADQEEQSNSTGSTDHERGWWPGIVAAASS--HSRLYKSLIPGLGSYDVSVLVEALKQKKAKFAMHLLGNQQLEKDLTALSDRLSREGGKERGK-------DRTVGIILNRMSRNVTLRWLLDGRHWLALVPRSXXXXXXXXXXXXXXXXIEAGE-VAWWDVDSKLPAPMLIGGVPQLLIYLRKNI 223
            P YHE QRRLCCG HTLNNL+Q+ W+D++ MD LA+SL  AD+       GS     GW    +  AS       Y+S +PGLG YDVSVLVEALK + A+F MH+L N +LE+DL  L  RLS   G+  G        +R +G+ILNR SR    RWLL+GRHWLAL+P                     GE + WW +DSKLPAP+L+GG    +  +R+ +
Sbjct:   20 PSYHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSLGAADKASSGQHKGS-----GWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIP------------WPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVASVREAV 227
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BLAST of NO06G02040 vs. NCBI_GenBank
Match: XP_005847048.1 (hypothetical protein CHLNCDRAFT_134697 [Chlorella variabilis] >EFN54946.1 hypothetical protein CHLNCDRAFT_134697 [Chlorella variabilis])

HSP 1 Score: 68.2 bits (165), Expect = 4.400e-8
Identity = 64/204 (31.37%), Postives = 82/204 (40.20%), Query Frame = 0 
Query:    6 SPPPYHERQRRLCCGAHTLNNLFQYKWVDSSAMDALATSLAVADQEEQSNSTGSTDHERGWWPGIVAAASSHSRLYKSLIPGLGSYDVSVLVEALKQKKAKFAMHLLGNQQLEKDLTALSDRLSREGGKERGKDRTVGIILNRMSRNVTLRWLLDGRHWLALVPRSXXXXXXXXXXXXXXXXIEAGEVAWWDVDSKLPAPMLIG 210
            S P YHERQR   C  HTLNNLFQ +  DS  +D +A  LA                     PG +     H  L+      LG++DV+V+  AL++   K  +H         DL  LS             D   G++LN        R +L GRHWLAL                     ++    WWD+DS LPAP  IG
Sbjct:    4 SAPGYHERQRLQQCLLHTLNNLFQQRVFDSVELDGIANQLA---------------------PGRLPILHPHRTLF------LGNWDVNVMELALRRHGKK--LHWC-------DLRDLS-------FAHLDLDACWGLLLNVKGEGALSR-ILGGRHWLAL---------------------KSFGGRWWDLDSTLPAPQPIG 142
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BLAST of NO06G02040 vs. NCBI_GenBank
Match: CBJ28700.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.8 bits (164), Expect = 5.700e-8
Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 0 
Query:   10 YHERQRRLCCGAHTLNNLFQYKWVDSSAMDALATSLAVADQEEQSNSTGSTDHERGWWPGIVAAASSHSRLYKSLIPGLGSYDVSVLVEALKQKKAKFAMHLLGNQQLEKDLTALSDRLSR 131
            YHERQR + C  H LNNLFQ  W +   M+ LA  L         N   +   E G    ++         YKS+IP +G YD++V++EALK ++ + ++H++ N    KD TA    L+R
Sbjct:    2 YHERQRLMQCAMHALNNLFQEPWANRELMERLALEL--------GNREATLRSESGLRRLLI-------NPYKSVIPMVGDYDINVVLEALKLRECRVSLHVVFN---AKDPTAFELALAR 104
The following BLAST results are available for this feature:
BLAST of NO06G02040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM26212.18.400e-4445.33conserved unknown protein [Nannochloropsis gaditan... [more]
XP_005847048.14.400e-831.37hypothetical protein CHLNCDRAFT_134697 [Chlorella ... [more]
CBJ28700.15.700e-835.54conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000257NSK000257Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02040.1NO06G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G02040.2NO06G02040.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597216gene_6514Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g29gene4303Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02040.1NO06G02040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G02040.2NO06G02040.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02040 ID=NO06G02040|Name=NO06G02040|organism=Nannochloropsis oceanica|type=gene|length=1495bp
CACACAGAAAAGGCTCGCACCCAAGGCTAGCCAGCCAGCCAGTTTAAGCG
GTATCAACGACCGCAGCAACGCCTCAACCGACGTCCATCCGCACCCCAAA
AAATgtgcgttcctccccataccacctgtcgtgccttgcatgccttcggc
cctcccttctccatttccttgttcaatgaaaataaaccatcgcccctatg
cctttctttgcatctctagtgccccccctgcgcgctttcgccctactccc
cacccacgcatgccctccgaaccaccaacccgacggaggatcaacagtac
ctttgggagccgccctttcttttcaataagggacgggcaattccgaggag
tcatcggaagtatttttcgatgctccttaattcgcccttgtgactgtcca
cctccaatagcaaaaaacgacatcatagtgcatgcaggtggcacggtcct
ttttcggaaggcgggcatacccctgtgagtctccatttagtcgcgacaat
tcttgcccgtttataaaatttgagagtctgcgtagattaaaaaatagtcc
aacctggtgattcactttccttcgctctccacgcatgcatttaactgacc
tcaaaagctctctcgttctccctatatttcattccgcagATATGACCTAT
TTTCACTCTCCTCCCCCCTACCATGAACGCCAACGCCGGCTCTGCTGCGG
TGCCCACACCCTCAACAATCTCTTTCAATACAAATGGGTCGACTCGTCCG
CCATGGACGCGCTTGCCACCTCTCTGGCTGTTGCTGACCAAGAAGAGCAA
AGCAACAGCACCGGCAGCACTGATCACGAGAGAGGGTGGTGGCCAGGCAT
CGTGGCTGCTGCCTCGTCTCATTCCAGACTTTACAAGAGTCTGATTCCCG
GGTTGGGTAGTTATGATGTGTCGGTGTTGGTGGAGGCATTGAAACAAAAA
AAGGCGAAGTTTGCGATGCACTTATTGGGAAATCAACAGTTGGAAAAAGA
CTTGACTGCATTAAGTGATCGACTTTCCAGGGAAGGAGGGAAGGAGAGAG
GGAAAGACAGAACAGTAGGCATTATATTGAATAGAATGTCGCGGAATGTG
ACGCTGCGGTGGTTGTTGGACGGGAGGCATTGGCTGGCGCTTGTTCCTCG
GTCTTCCTCCTCTTCAACAGCAGCAGCGGGAGCAGCAGCAGCAACAGCAA
CTATAGAAGCAGGAGAAGTAGCATGGTGGGACGTGGACTCTAAACTTCCG
GCGCCAATGTTGATAGGTGGAGTACCCCAGCTGCTGATTTACCTTAGGAA
GAACATTCTGGAAGAGGGAGGACAGGCGTTCGTGGTTACGGAGGACGAAA
AGGAGGAAGAGGAGGACGAGGAGCAGAGGGAGGAGGAGGAGAAAGAAGAG
GAGGACGGGAATTAAGGATTAAGGGAGAAAAAGATTGAAGGGAATAGCAA
GGAAGAGTGTGTAAAGAAACAATTGTGAATAAATGGAGACGAAAG
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protein sequence of NO06G02040.1

>NO06G02040.1-protein ID=NO06G02040.1-protein|Name=NO06G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MTYFHSPPPYHERQRRLCCGAHTLNNLFQYKWVDSSAMDALATSLAVADQ
EEQSNSTGSTDHERGWWPGIVAAASSHSRLYKSLIPGLGSYDVSVLVEAL
KQKKAKFAMHLLGNQQLEKDLTALSDRLSREGGKERGKDRTVGIILNRMS
RNVTLRWLLDGRHWLALVPRSSSSSTAAAGAAAATATIEAGEVAWWDVDS
KLPAPMLIGGVPQLLIYLRKNILEEGGQAFVVTEDEKEEEEDEEQREEEE
KEEEDGN*
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protein sequence of NO06G02040.2

>NO06G02040.2-protein ID=NO06G02040.2-protein|Name=NO06G02040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MQVARSFFGRRAYPYMTYFHSPPPYHERQRRLCCGAHTLNNLFQYKWVDS
SAMDALATSLAVADQEEQSNSTGSTDHERGWWPGIVAAASSHSRLYKSLI
PGLGSYDVSVLVEALKQKKAKFAMHLLGNQQLEKDLTALSDRLSREGGKE
RGKDRTVGIILNRMSRNVTLRWLLDGRHWLALVPRSSSSSTAAAGAAAAT
ATIEAGEVAWWDVDSKLPAPMLIGGVPQLLIYLRKNILEEGGQAFVVTED
EKEEEEDEEQREEEEKEEEDGN*
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Synonyms
Publications