NO06G01980, NO06G01980 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G01980 vs. NCBI_GenBank
Match: EWM26246.1 (uncharacterized protein Naga_100025g24 [Nannochloropsis gaditana]) HSP 1 Score: 296.6 bits (758), Expect = 1.000e-76 Identity = 165/237 (69.62%), Postives = 187/237 (78.90%), Query Frame = 0 Query: 122 ALTTAEAQSTYLWERYVNLLNVSPLDADVNRFPPTCFTLPSSSSSSGFTALKRVKGKQPAKPTGHAQTSDSHPGKGDANVTDFLQQAFPQLQKIASDKSQREMAHPFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKERKDVNEQLRLALF 359 +L TAEA S+YLW+RYV+LL++SPLDAD N FPP CF LP SSS + R + +P + AQ + +G ANVT+FLQ AFPQLQ IA+DKSQRE PFVVLLSSSAVRANELAKDLR+KLRNLKTAKLFAKHLKV AQVEVLQSEF+ALAVGTPNRL KLLEM A+SL RCRLVVLD+SFKDSK FDLL LPG+A DTAL LRDHVL AM AR + ++LRLALF Sbjct: 6 SLVTAEALSSYLWKRYVSLLSISPLDADANLFPPDCFALPVSSSMPSASTPGRKRKSRPLPRSQPAQPT----AEGGANVTEFLQSAFPQLQMIATDKSQREKGMPFVVLLSSSAVRANELAKDLRIKLRNLKTAKLFAKHLKVPAQVEVLQSEFHALAVGTPNRLSKLLEMGALSLDRCRLVVLDTSFKDSKGFDLLHLPGLAADTALFLRDHVLKAMAARSS-SEARDRLRLALF 237
BLAST of NO06G01980 vs. NCBI_GenBank
Match: ORX76731.1 (hypothetical protein BCR32DRAFT_248500 [Anaeromyces robustus]) HSP 1 Score: 92.4 bits (228), Expect = 3.000e-15 Identity = 50/150 (33.33%), Postives = 89/150 (59.33%), Query Frame = 0 Query: 199 ANVTDFLQQAFPQLQKIASDKSQREMAH--PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER 347 +N++ F++Q +P +K + H P V++++ SA+RA E+ + L + K KLF+KH+KV QVE L +AVGTPNRLIKL E ++++ + L+V+D +FKDSK+ ++ +P + KD ++ H + + + ++ Sbjct: 59 SNISSFVKQVYPNWKKHLGKPPKETDYHGQPSVLVVTQSAIRAVEVIRALSEFSKYCKVGKLFSKHMKVKDQVEFLNQSVVKIAVGTPNRLIKLAENESLNMNKLDLLVIDYTFKDSKNRNIFEIPEIRKDLLTFIKQHCINRIKEKTQK 208
BLAST of NO06G01980 vs. NCBI_GenBank
Match: ORY10523.1 (hypothetical protein LY90DRAFT_465239 [Neocallimastix californiae]) HSP 1 Score: 92.4 bits (228), Expect = 3.000e-15 Identity = 50/141 (35.46%), Postives = 83/141 (58.87%), Query Frame = 0 Query: 199 ANVTDFLQQAFPQLQKIAS--DKSQREMAHPFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVL 338 +N++ F++Q +P +K K P V++++ SA+RA E+ + L + K KLF+KH+KV QVE L +AVGTPNRLIKL E ++ + + L+V+D +FKDSK+ ++ +P + KD ++ H + Sbjct: 197 SNLSSFIKQVYPNWKKNLGKPPKESDYKGQPSVLVVTQSAIRAVEVIRSLNEFSKYCKVGKLFSKHMKVKEQVEYLSKSVVKIAVGTPNRLIKLAENESLDMNKLDLLVIDYTFKDSKNRNIFEIPEIRKDLLAFIKQHCI 337
BLAST of NO06G01980 vs. NCBI_GenBank
Match: PAN37519.1 (hypothetical protein PAHAL_G01173 [Panicum hallii]) HSP 1 Score: 89.7 bits (221), Expect = 1.900e-14 Identity = 56/139 (40.29%), Postives = 90/139 (64.75%), Query Frame = 0 Query: 227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER---------KDVNEQLRLA 357 P ++++SS+A+R+ EL + L+M + + KLFAKHLKV+ QV +L + N +A GTP+R+ KL+++ A+SL+R +LVVLD KD+KSF+L TLP V+K+ L + ++ P + R +D+ + L LA Sbjct: 167 PALLVISSAALRSLELLRGLKMFTKECRPVKLFAKHLKVEEQVAMLNARVN-IACGTPSRIKKLIDIEALSLSRLKLVVLDMQ-KDAKSFNLFTLPQVSKEFWDLYKGYLDPKVREGNTRICFYGAVSERDITKALPLA 303
BLAST of NO06G01980 vs. NCBI_GenBank
Match: ORX59228.1 (hypothetical protein BCR36DRAFT_343073 [Piromyces finnis]) HSP 1 Score: 89.4 bits (220), Expect = 2.500e-14 Identity = 47/149 (31.54%), Postives = 90/149 (60.40%), Query Frame = 0 Query: 200 NVTDFLQQAFPQLQKIASDKSQREMAH--PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER 347 N++ +++Q +P +K + H P V++++ SA+RA E+ + L + K KLF+KH+KV QVE L +AVGTPNRLIKL E +++++ + L+V+D ++KDSK+ ++ +P + KD + ++ + + + + ++ Sbjct: 186 NLSSYIKQVYPNWKKHLGKPPKESDYHGQPSVLVVTQSAIRAVEVIRALSEFSKYCKVGKLFSKHMKVKEQVEFLSKSVVKIAVGTPNRLIKLAENDSLNMNKLDLLVIDYNYKDSKNRNIFEIPEIRKDLLIFIKQYCIDRIKDQSQK 334
BLAST of NO06G01980 vs. NCBI_GenBank
Match: OAY83729.1 (Protein CMSS1 [Ananas comosus]) HSP 1 Score: 89.0 bits (219), Expect = 3.300e-14 Identity = 57/139 (41.01%), Postives = 87/139 (62.59%), Query Frame = 0 Query: 227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER---------KDVNEQLRLA 357 P ++++S+SA+R+ EL + L+ R+ + KLFAKH+KV+ QV L+ N +A GTP+R+ KL+++ AMSL+R ++VVLD +D+KSF L TLP V+ + L R H+ P + R KDVN+ L A Sbjct: 172 PALLVISTSALRSLELLRGLKPFTRDCRAVKLFAKHMKVEEQVTSLKGRVN-IASGTPSRIKKLIDLEAMSLSRLQVVVLDMQ-RDAKSFSLFTLPQVSTEFWDLYRSHLEPKVLCGDTRICFYGAVRKKDVNKALASA 308
BLAST of NO06G01980 vs. NCBI_GenBank
Match: XP_020112293.1 (protein CMSS1 [Ananas comosus]) HSP 1 Score: 89.0 bits (219), Expect = 3.300e-14 Identity = 57/139 (41.01%), Postives = 87/139 (62.59%), Query Frame = 0 Query: 227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER---------KDVNEQLRLA 357 P ++++S+SA+R+ EL + L+ R+ + KLFAKH+KV+ QV L+ N +A GTP+R+ KL+++ AMSL+R ++VVLD +D+KSF L TLP V+ + L R H+ P + R KDVN+ L A Sbjct: 174 PALLVISTSALRSLELLRGLKPFTRDCRAVKLFAKHMKVEEQVTSLKGRVN-IASGTPSRIKKLIDLEAMSLSRLQVVVLDMQ-RDAKSFSLFTLPQVSTEFWDLYRSHLEPKVLCGDTRICFYGAVRKKDVNKALASA 310
BLAST of NO06G01980 vs. NCBI_GenBank
Match: XP_002446236.1 (protein CMSS1 [Sorghum bicolor] >EES10564.1 hypothetical protein SORBI_3006G040000 [Sorghum bicolor]) HSP 1 Score: 88.2 bits (217), Expect = 5.700e-14 Identity = 52/119 (43.70%), Postives = 82/119 (68.91%), Query Frame = 0 Query: 220 SQREMAHPFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLP 339 S+ M P ++++SSSA+R+ +L + L+M + + KLFAKHLKV+ QV +L + N +A GTP+R+ KL+++ A+SL+R +LVVLD KD+KSF L TLP V+ + L + ++ P Sbjct: 153 SEIAMGSPTLLVISSSALRSLDLLRGLKMFTKECRPVKLFAKHLKVEQQVGMLHARVN-IACGTPSRIKKLIDLEALSLSRLKLVVLDMQ-KDAKSFTLFTLPQVSNEFWDLYKGYLDP 269
BLAST of NO06G01980 vs. NCBI_GenBank
Match: NP_001145654.1 (uncharacterized protein LOC100279147 [Zea mays] >ACG49080.1 hypothetical protein [Zea mays] >ONM18307.1 DEAD-box helicase family protein [Zea mays]) HSP 1 Score: 87.8 bits (216), Expect = 7.400e-14 Identity = 51/112 (45.54%), Postives = 79/112 (70.54%), Query Frame = 0 Query: 227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLP 339 P ++++SSSA+R+ +L + L+M + + KLFAKHLKV+ QV +L + N +A GTP+R+ KL++M A+SL+R +LVVLD KD+KSF L TLP V+ + L + ++ P Sbjct: 160 PTLLVISSSALRSLDLLRGLKMFTKECRPVKLFAKHLKVEEQVAMLNARVN-IACGTPSRIKKLIDMEALSLSRLKLVVLDMQ-KDAKSFTLFTLPQVSNEFWDLYKGYLDP 269
BLAST of NO06G01980 vs. NCBI_GenBank
Match: PUZ46677.1 (hypothetical protein GQ55_7G101000 [Panicum hallii var. hallii]) HSP 1 Score: 87.4 bits (215), Expect = 9.600e-14 Identity = 50/112 (44.64%), Postives = 80/112 (71.43%), Query Frame = 0 Query: 227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLP 339 P ++++SS+A+R+ EL + L+M + + KLFAKHLKV+ QV +L + N + GTP+R+ KL+++ A+SL+R +LVVLD KD+KSF+L TLP V+K+ L + ++ P Sbjct: 168 PALLVISSAALRSLELLRGLKMFTKECRPVKLFAKHLKVEEQVAMLNARVN-ITCGTPSRIKKLIDIEALSLSRLKLVVLDMQ-KDAKSFNLFTLPQVSKEFWDLYKGYLDP 277 The following BLAST results are available for this feature:
BLAST of NO06G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G01980 ID=NO06G01980|Name=NO06G01980|organism=Nannochloropsis oceanica|type=gene|length=1283bpback to top protein sequence of NO06G01980.1 >NO06G01980.1-protein ID=NO06G01980.1-protein|Name=NO06G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bpback to top Synonyms
Publications
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