NO06G01980, NO06G01980 (gene) Nannochloropsis oceanica

Overview
NameNO06G01980
Unique NameNO06G01980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1283
Alignment locationchr6:590020..591302 +

Link to JBrowse

Properties
Property NameValue
DescriptionProtein CMSS1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:590020..591302 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032704Cms1
Homology
BLAST of NO06G01980 vs. NCBI_GenBank
Match: EWM26246.1 (uncharacterized protein Naga_100025g24 [Nannochloropsis gaditana])

HSP 1 Score: 296.6 bits (758), Expect = 1.000e-76
Identity = 165/237 (69.62%), Postives = 187/237 (78.90%), Query Frame = 0
Query:  122 ALTTAEAQSTYLWERYVNLLNVSPLDADVNRFPPTCFTLPSSSSSSGFTALKRVKGKQPAKPTGHAQTSDSHPGKGDANVTDFLQQAFPQLQKIASDKSQREMAHPFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKERKDVNEQLRLALF 359
            +L TAEA S+YLW+RYV+LL++SPLDAD N FPP CF LP SSS    +   R +  +P   +  AQ +     +G ANVT+FLQ AFPQLQ IA+DKSQRE   PFVVLLSSSAVRANELAKDLR+KLRNLKTAKLFAKHLKV AQVEVLQSEF+ALAVGTPNRL KLLEM A+SL RCRLVVLD+SFKDSK FDLL LPG+A DTAL LRDHVL AM AR    +  ++LRLALF
Sbjct:    6 SLVTAEALSSYLWKRYVSLLSISPLDADANLFPPDCFALPVSSSMPSASTPGRKRKSRPLPRSQPAQPT----AEGGANVTEFLQSAFPQLQMIATDKSQREKGMPFVVLLSSSAVRANELAKDLRIKLRNLKTAKLFAKHLKVPAQVEVLQSEFHALAVGTPNRLSKLLEMGALSLDRCRLVVLDTSFKDSKGFDLLHLPGLAADTALFLRDHVLKAMAARSS-SEARDRLRLALF 237          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: ORX76731.1 (hypothetical protein BCR32DRAFT_248500 [Anaeromyces robustus])

HSP 1 Score: 92.4 bits (228), Expect = 3.000e-15
Identity = 50/150 (33.33%), Postives = 89/150 (59.33%), Query Frame = 0
Query:  199 ANVTDFLQQAFPQLQKIASDKSQREMAH--PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER 347
            +N++ F++Q +P  +K      +    H  P V++++ SA+RA E+ + L    +  K  KLF+KH+KV  QVE L      +AVGTPNRLIKL E  ++++ +  L+V+D +FKDSK+ ++  +P + KD    ++ H +  +  + ++
Sbjct:   59 SNISSFVKQVYPNWKKHLGKPPKETDYHGQPSVLVVTQSAIRAVEVIRALSEFSKYCKVGKLFSKHMKVKDQVEFLNQSVVKIAVGTPNRLIKLAENESLNMNKLDLLVIDYTFKDSKNRNIFEIPEIRKDLLTFIKQHCINRIKEKTQK 208          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: ORY10523.1 (hypothetical protein LY90DRAFT_465239 [Neocallimastix californiae])

HSP 1 Score: 92.4 bits (228), Expect = 3.000e-15
Identity = 50/141 (35.46%), Postives = 83/141 (58.87%), Query Frame = 0
Query:  199 ANVTDFLQQAFPQLQKIAS--DKSQREMAHPFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVL 338
            +N++ F++Q +P  +K      K       P V++++ SA+RA E+ + L    +  K  KLF+KH+KV  QVE L      +AVGTPNRLIKL E  ++ + +  L+V+D +FKDSK+ ++  +P + KD    ++ H +
Sbjct:  197 SNLSSFIKQVYPNWKKNLGKPPKESDYKGQPSVLVVTQSAIRAVEVIRSLNEFSKYCKVGKLFSKHMKVKEQVEYLSKSVVKIAVGTPNRLIKLAENESLDMNKLDLLVIDYTFKDSKNRNIFEIPEIRKDLLAFIKQHCI 337          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: PAN37519.1 (hypothetical protein PAHAL_G01173 [Panicum hallii])

HSP 1 Score: 89.7 bits (221), Expect = 1.900e-14
Identity = 56/139 (40.29%), Postives = 90/139 (64.75%), Query Frame = 0
Query:  227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER---------KDVNEQLRLA 357
            P ++++SS+A+R+ EL + L+M  +  +  KLFAKHLKV+ QV +L +  N +A GTP+R+ KL+++ A+SL+R +LVVLD   KD+KSF+L TLP V+K+   L + ++ P +     R         +D+ + L LA
Sbjct:  167 PALLVISSAALRSLELLRGLKMFTKECRPVKLFAKHLKVEEQVAMLNARVN-IACGTPSRIKKLIDIEALSLSRLKLVVLDMQ-KDAKSFNLFTLPQVSKEFWDLYKGYLDPKVREGNTRICFYGAVSERDITKALPLA 303          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: ORX59228.1 (hypothetical protein BCR36DRAFT_343073 [Piromyces finnis])

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-14
Identity = 47/149 (31.54%), Postives = 90/149 (60.40%), Query Frame = 0
Query:  200 NVTDFLQQAFPQLQKIASDKSQREMAH--PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER 347
            N++ +++Q +P  +K      +    H  P V++++ SA+RA E+ + L    +  K  KLF+KH+KV  QVE L      +AVGTPNRLIKL E +++++ +  L+V+D ++KDSK+ ++  +P + KD  + ++ + +  +  + ++
Sbjct:  186 NLSSYIKQVYPNWKKHLGKPPKESDYHGQPSVLVVTQSAIRAVEVIRALSEFSKYCKVGKLFSKHMKVKEQVEFLSKSVVKIAVGTPNRLIKLAENDSLNMNKLDLLVIDYNYKDSKNRNIFEIPEIRKDLLIFIKQYCIDRIKDQSQK 334          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: OAY83729.1 (Protein CMSS1 [Ananas comosus])

HSP 1 Score: 89.0 bits (219), Expect = 3.300e-14
Identity = 57/139 (41.01%), Postives = 87/139 (62.59%), Query Frame = 0
Query:  227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER---------KDVNEQLRLA 357
            P ++++S+SA+R+ EL + L+   R+ +  KLFAKH+KV+ QV  L+   N +A GTP+R+ KL+++ AMSL+R ++VVLD   +D+KSF L TLP V+ +   L R H+ P +     R         KDVN+ L  A
Sbjct:  172 PALLVISTSALRSLELLRGLKPFTRDCRAVKLFAKHMKVEEQVTSLKGRVN-IASGTPSRIKKLIDLEAMSLSRLQVVVLDMQ-RDAKSFSLFTLPQVSTEFWDLYRSHLEPKVLCGDTRICFYGAVRKKDVNKALASA 308          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: XP_020112293.1 (protein CMSS1 [Ananas comosus])

HSP 1 Score: 89.0 bits (219), Expect = 3.300e-14
Identity = 57/139 (41.01%), Postives = 87/139 (62.59%), Query Frame = 0
Query:  227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER---------KDVNEQLRLA 357
            P ++++S+SA+R+ EL + L+   R+ +  KLFAKH+KV+ QV  L+   N +A GTP+R+ KL+++ AMSL+R ++VVLD   +D+KSF L TLP V+ +   L R H+ P +     R         KDVN+ L  A
Sbjct:  174 PALLVISTSALRSLELLRGLKPFTRDCRAVKLFAKHMKVEEQVTSLKGRVN-IASGTPSRIKKLIDLEAMSLSRLQVVVLDMQ-RDAKSFSLFTLPQVSTEFWDLYRSHLEPKVLCGDTRICFYGAVRKKDVNKALASA 310          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: XP_002446236.1 (protein CMSS1 [Sorghum bicolor] >EES10564.1 hypothetical protein SORBI_3006G040000 [Sorghum bicolor])

HSP 1 Score: 88.2 bits (217), Expect = 5.700e-14
Identity = 52/119 (43.70%), Postives = 82/119 (68.91%), Query Frame = 0
Query:  220 SQREMAHPFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLP 339
            S+  M  P ++++SSSA+R+ +L + L+M  +  +  KLFAKHLKV+ QV +L +  N +A GTP+R+ KL+++ A+SL+R +LVVLD   KD+KSF L TLP V+ +   L + ++ P
Sbjct:  153 SEIAMGSPTLLVISSSALRSLDLLRGLKMFTKECRPVKLFAKHLKVEQQVGMLHARVN-IACGTPSRIKKLIDLEALSLSRLKLVVLDMQ-KDAKSFTLFTLPQVSNEFWDLYKGYLDP 269          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: NP_001145654.1 (uncharacterized protein LOC100279147 [Zea mays] >ACG49080.1 hypothetical protein [Zea mays] >ONM18307.1 DEAD-box helicase family protein [Zea mays])

HSP 1 Score: 87.8 bits (216), Expect = 7.400e-14
Identity = 51/112 (45.54%), Postives = 79/112 (70.54%), Query Frame = 0
Query:  227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLP 339
            P ++++SSSA+R+ +L + L+M  +  +  KLFAKHLKV+ QV +L +  N +A GTP+R+ KL++M A+SL+R +LVVLD   KD+KSF L TLP V+ +   L + ++ P
Sbjct:  160 PTLLVISSSALRSLDLLRGLKMFTKECRPVKLFAKHLKVEEQVAMLNARVN-IACGTPSRIKKLIDMEALSLSRLKLVVLDMQ-KDAKSFTLFTLPQVSNEFWDLYKGYLDP 269          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: PUZ46677.1 (hypothetical protein GQ55_7G101000 [Panicum hallii var. hallii])

HSP 1 Score: 87.4 bits (215), Expect = 9.600e-14
Identity = 50/112 (44.64%), Postives = 80/112 (71.43%), Query Frame = 0
Query:  227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLP 339
            P ++++SS+A+R+ EL + L+M  +  +  KLFAKHLKV+ QV +L +  N +  GTP+R+ KL+++ A+SL+R +LVVLD   KD+KSF+L TLP V+K+   L + ++ P
Sbjct:  168 PALLVISSAALRSLELLRGLKMFTKECRPVKLFAKHLKVEEQVAMLNARVN-ITCGTPSRIKKLIDIEALSLSRLKLVVLDMQ-KDAKSFNLFTLPQVSKEFWDLYKGYLDP 277          
The following BLAST results are available for this feature:
BLAST of NO06G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26246.11.000e-7669.62uncharacterized protein Naga_100025g24 [Nannochlor... [more]
ORX76731.13.000e-1533.33hypothetical protein BCR32DRAFT_248500 [Anaeromyce... [more]
ORY10523.13.000e-1535.46hypothetical protein LY90DRAFT_465239 [Neocallimas... [more]
PAN37519.11.900e-1440.29hypothetical protein PAHAL_G01173 [Panicum hallii][more]
ORX59228.12.500e-1431.54hypothetical protein BCR36DRAFT_343073 [Piromyces ... [more]
OAY83729.13.300e-1441.01Protein CMSS1 [Ananas comosus][more]
XP_020112293.13.300e-1441.01protein CMSS1 [Ananas comosus][more]
XP_002446236.15.700e-1443.70protein CMSS1 [Sorghum bicolor] >EES10564.1 hypoth... [more]
NP_001145654.17.400e-1445.54uncharacterized protein LOC100279147 [Zea mays] >A... [more]
PUZ46677.19.600e-1444.64hypothetical protein GQ55_7G101000 [Panicum hallii... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000261NSK000261Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01980.1NO06G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597205gene_6507Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g24gene4307Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01980.1NO06G01980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01980 ID=NO06G01980|Name=NO06G01980|organism=Nannochloropsis oceanica|type=gene|length=1283bp
ATGGGGGACACCTTGGACGACGGTTTCGAGGCCTACGACCTGGAAGCGGA
CGCGGAGGAATTTGCGGACGACGACGAGgtgagtcaagggcgcacttgct
gatgagagacgatgcgtggggtcgtgtgggccatccgagtatccatgtca
tttaccacgcctccccctcccgcacaaagCCACTGATCGAAGCGGGACTC
TCCAAGCGCAAGGCTGAGGATTGGGAGGAGGGCAAGGACAAGAAGTCCAA
GCAGCAATCCAAGAAGCAGAAGCAAAAGGTACAAGCCACGGGTGGGGAAG
AGGAGGAGGAGGGTGGGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGCGACATCCAAGACGAGGACAACAAGGGCACAACCGCCACCGACGG
GGAGAGGGTGGAAAAAAAAAAGAAGAAGCGGAAGAGGAAGTCCAAGATTC
CTAAGCCCACCGCGGCCTTGACGACAGCCGAAGCGCAATCAACCTACCTG
TGGGAGCGCTACGTGAACTTGCTCAACGTCTCGCCGCTTGACGCTGACGT
AAATCGTTTCCCCCCCACCTGCTTCACACTTCCCTCCTCCTCGTCGTCCT
CTGGCTTCACTGCCCTAAAAAGAGTGAAAGGGAAGCAACCCGCGAAGCCA
ACGGGCCACGCCCAAACCTCCGACAGTCACCCTGGCAAGGGAGACGCAAA
CGTCACCGATTTTCTCCAGCAAGCCTTCCCACAGCTTCAAAAAATCGCTT
CTGACAAATCCCAACGTGAAATGGCACACCCTTTCGTTGTCCTACTATCT
TCCTCCGCTGTACGAGCGAATGAGCTCGCGAAGGATCTACGGATGAAGCT
CCGGAATCTCAAGACGGCAAAATTGTTTGCGAAACATCTCAAAGTGGACG
CACAGGTCGAAGTGCTTCAGAGTGAGTTTAATGCCTTGGCGGTGGGCACG
CCGAATCGCTTGATCAAATTGTTGGAGATGAATGCGATGAGTTTGGCGCG
ATGCCGGTTGGTGGTGTTGGACAGTAGTTTCAAAGATTCCAAGTCGTTTG
ATTTGTTGACCTTGCCCGGGGTGGCGAAAGACACGGCGTTACTTTTGAGA
GACCATGTCCTGCCAGCTATGACGGCACGCAAGGAGAGAAAAGACGTGAA
CGAGCAGCTAAGGTTGGCTCTGTTTTAGAAATTGGAAGAGGAGGAGGAGG
GAGGGAGGCAGGGAGCGGGAGATGAAGAGGAGGAAGGAATGGGAAGATAA
TCAAAAGCATATTCAATTTAAGGCCACTGGACG
back to top

protein sequence of NO06G01980.1

>NO06G01980.1-protein ID=NO06G01980.1-protein|Name=NO06G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MGDTLDDGFEAYDLEADAEEFADDDEPLIEAGLSKRKAEDWEEGKDKKSK
QQSKKQKQKVQATGGEEEEEGGEVEEEEEEEEEEGDIQDEDNKGTTATDG
ERVEKKKKKRKRKSKIPKPTAALTTAEAQSTYLWERYVNLLNVSPLDADV
NRFPPTCFTLPSSSSSSGFTALKRVKGKQPAKPTGHAQTSDSHPGKGDAN
VTDFLQQAFPQLQKIASDKSQREMAHPFVVLLSSSAVRANELAKDLRMKL
RNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLAR
CRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKERKDVN
EQLRLALF*
back to top
Synonyms
Publications