NO06G01960, NO06G01960 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G01960 vs. NCBI_GenBank
Match: EWM26257.1 (ribonuclease h [Nannochloropsis gaditana]) HSP 1 Score: 168.3 bits (425), Expect = 5.100e-38 Identity = 124/432 (28.70%), Postives = 187/432 (43.29%), Query Frame = 0 Query: 2 KFYAVRLPIRAIFTSWPECNAVVSRANFANFKSFPTLEEARVYMEDGLALQEQPDEDGGEQQHVEKFMGDGGKDYEQRAGKPWGLKQESEGSRDGIGEGXXXXXXXXXXXXXXXXXFMNTAESKREEQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVISLLSDSGDEDYSEDLRGGQKRRLKSDWGQ---------AEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAHVITSGKLFFDGGSRGNPGIAGCGAVMYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQVFGDSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREENKVADALANEGMDGRKEGGAVVVEE 425 K+YAV++P+RAIFTSW EC+AVV+ A A FKSF +L+EAR ++EDGL Q+ + + H + + +D + G+ +E E + +G+ + N+ R+E + + + + +G + + +++R K + Q A+E + + +G LFFDGG+RGNPG++G GAVM+D ++LW+LS FLG D+TNNQAEY AL GLEEA +RGV ++ GDS LV++Q++G WKVKN + H++ AL ++F+ ++PR EN VADALAN MD K VVEE Sbjct: 48 KYYAVKVPMRAIFTSWSECHAVVNGAGNATFKSFSSLDEARAFVEDGLESQQYTGKKSSRESHGLQIFSE--QDLKDCGMLQEGIDEEREQNIEGL--------------------YANSGAETRKEYM----------------------ERSSTPHTDMDNHVCGTGGARCAANEERRKRKRTKEEHAQDVSQEQDAFAQECGDAPLTGRLGSRIGGGSICTVGMNELAGEGRGDQENEDDDFDDESSRVTEPIPAIILSPNDTSPNIPSEDVSATALLQRRPRFVDAGVLFFDGGARGNPGVSGGGAVMFD-CDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMD--KRHSIPVVEE 432
BLAST of NO06G01960 vs. NCBI_GenBank
Match: PSC67966.1 (bifunctional RNase H acid phosphatase [Micractinium conductrix]) HSP 1 Score: 131.3 bits (329), Expect = 6.900e-27 Identity = 66/134 (49.25%), Postives = 91/134 (67.91%), Query Frame = 0 Query: 284 KLFFDGGSRGNPGIAGCGAVMYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQVFGDSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREENKVADALANEGMDGRKEG 418 +L FDG S+ NPG AG GAV+Y+E G ++ L ++G TNNQAEYA L GL AL+ G V+V GDSTL+V+QV G W+VKN G+R +H+ A+AL ++F F +PR +N VADAL+N+ +D + G Sbjct: 166 RLEFDGASKQNPGPAGFGAVIYEEAEGEEVHRLCQYMGDLCTNNQAEYAGLIAGLAAALELGCRQVKVQGDSTLIVQQVLGNWQVKNEGLRPYHAAAVALARRFAGFEAKQVPRAQNAVADALSNQAIDEFRSG 299
BLAST of NO06G01960 vs. NCBI_GenBank
Match: PRW20551.1 (ribonuclease H [Chlorella sorokiniana]) HSP 1 Score: 128.3 bits (321), Expect = 5.800e-26 Identity = 65/134 (48.51%), Postives = 88/134 (65.67%), Query Frame = 0 Query: 284 KLFFDGGSRGNPGIAGCGAVMYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQVFGDSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREENKVADALANEGMDGRKEG 418 +L FDGGS+GNPG AG GAV+YD+ SG ++ L ++G TNNQAEYA L GL AL+ G S ++V GDS LV+ QV G W+VK G+R +H A L ++F F + RE N+ ADAL+N+ +D + G Sbjct: 139 RLEFDGGSKGNPGPAGFGAVLYDDASGVEVARLCQYIGDHNTNNQAEYAGLIAGLAAALELGCSRLKVQGDSMLVINQVLGRWQVKTDGLRPYHRLAQQLARRFDHFEAKQVLREFNQAADALSNQAVDDYRSG 272
BLAST of NO06G01960 vs. NCBI_GenBank
Match: XP_022841041.1 (Ribonuclease H1, N-terminal [Ostreococcus tauri] >CEG01575.1 Ribonuclease H1, N-terminal [Ostreococcus tauri]) HSP 1 Score: 126.3 bits (316), Expect = 2.200e-25 Identity = 62/128 (48.44%), Postives = 90/128 (70.31%), Query Frame = 0 Query: 285 LFFDGGSRGNPGIAGCGAVMYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQVFGDSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREENKVADALANEGMD 413 L FDG SRGNPG AG GA++ + R + L +LG +RT N+AEYAALC GL +A++ G++ ++V GDS L+V QV G++K+K+ +R H++A++L KKF F+I ++ RE NK AD LAN +D Sbjct: 149 LEFDGASRGNPGEAGAGALLRRKRDDRVVEELLEYLGSERTVNEAEYAALCLGLRKAIELGITKIEVRGDSKLIVNQVDGSFKLKSENLRSMHAEAVSLKKKFAEFKISHVKREFNKHADHLANMAVD 276
BLAST of NO06G01960 vs. NCBI_GenBank
Match: XP_001419204.1 (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >ABO97497.1 predicted protein, partial [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 124.4 bits (311), Expect = 8.400e-25 Identity = 60/126 (47.62%), Postives = 90/126 (71.43%), Query Frame = 0 Query: 287 FDGGSRGNPGIAGCGAVMYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQVFGDSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREENKVADALANEGMD 413 FDG SRGNPG AG GA++ + R + L +LG++RT N+AEYAALC GL +A++ G++ ++V GDS L+V QV+G++K+K+A ++ H++A L +KF F+I ++ RE NK AD LAN +D Sbjct: 1 FDGASRGNPGEAGAGALLRRKRDDRIVEELLEYLGNERTVNEAEYAALCLGLRKAVELGITKIEVRGDSKLIVNQVEGSFKLKSANLKSMHAEACELKEKFTEFKISHVKREFNKHADHLANMAVD 126
BLAST of NO06G01960 vs. NCBI_GenBank
Match: WP_013275740.1 (ribonuclease H [Thermosediminibacter oceani] >ADL07698.1 ribonuclease H [Thermosediminibacter oceani DSM 16646]) HSP 1 Score: 119.8 bits (299), Expect = 2.100e-23 Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = 0 Query: 285 LFFDGGSRGNPGIAGCGAVMYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQVFGDSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREENKVADALANEGMD 413 ++ DG SRGNPG AG G V+ DE +G L +S ++G TNN AEY AL L+EAL+ G + +F DS L+VKQ+ G +++KN G++ +++A+ L K+FKRF I +I RE+NK AD LANEG+D Sbjct: 6 VYTDGASRGNPGDAGIGIVILDE-NGNTLKEISDYIG-QTTNNIAEYTALVTALKEALEMGCEEIGIFSDSELMVKQINGEYQIKNEGIKRLYAQAMELLKEFKRFSISHIRREQNKRADELANEGID 131
BLAST of NO06G01960 vs. NCBI_GenBank
Match: WP_068748886.1 (hypothetical protein [Thermovenabulum gondwanense] >KYO65184.1 14.7 kDa ribonuclease H-like protein [Thermovenabulum gondwanense]) HSP 1 Score: 119.0 bits (297), Expect = 3.500e-23 Identity = 65/128 (50.78%), Postives = 86/128 (67.19%), Query Frame = 0 Query: 285 LFFDGGSRGNPGIAGCGAVMYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQVFGDSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREENKVADALANEGMD 413 L+ DG SRGNPG AG G V+ DE G + +S ++G TNN AEY AL GL+EAL+ V VF DS L+VKQ+QG ++VKN G++ + + L K+FK+F IC++ RE NK AD LANEG+D Sbjct: 6 LYTDGASRGNPGDAGIGIVIIDE-EGNIVKEISDYIG-QTTNNIAEYKALITGLKEALELECEEVNVFTDSELMVKQIQGEYQVKNEGLKPLYKEVFELIKEFKKFSICHVRREMNKRADELANEGID 131
BLAST of NO06G01960 vs. NCBI_GenBank
Match: OGC46515.1 (hypothetical protein A2V49_00500 [candidate division WWE3 bacterium RBG_19FT_COMBO_34_6]) HSP 1 Score: 119.0 bits (297), Expect = 3.500e-23 Identity = 60/128 (46.88%), Postives = 87/128 (67.97%), Query Frame = 0 Query: 285 LFFDGGSRGNPGIAGCGAVMYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQVFGDSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREENKVADALANEGMD 413 L+ DGG+RGNPG G V+YDE + K++ LS ++G TNN+AEY +L G+ AL +G+ ++ VF DS L++KQV G++KVKN ++V+++K + L KKF +I REENK AD L NE +D Sbjct: 5 LYTDGGARGNPGPGAIGVVIYDE-NKNKIYELSKYIGMS-TNNEAEYTSLIEGIGSALDKGIKNLNVFMDSELIIKQVNGSYKVKNERLKVFYNKLVLLRKKFDFINFVHIKREENKQADLLVNEALD 130
BLAST of NO06G01960 vs. NCBI_GenBank
Match: WP_066351093.1 (hypothetical protein [Fervidicola ferrireducens] >KXG78496.1 14.7 kDa ribonuclease H-like protein [Fervidicola ferrireducens]) HSP 1 Score: 118.6 bits (296), Expect = 4.600e-23 Identity = 62/129 (48.06%), Postives = 88/129 (68.22%), Query Frame = 0 Query: 284 KLFFDGGSRGNPGIAGCGAVMYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQVFGDSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREENKVADALANEGMD 413 K++ DG SRGNPG AG G VM DE +G + +S ++G TNN AEY AL L+EAL+ G ++VF DS L+VKQ+ G +++KN G++ +S+ + L K+F+ F I ++ RE NK AD LANEG+D Sbjct: 5 KVYVDGASRGNPGDAGIGIVMLDE-NGNVVKEMSDYIG-QTTNNIAEYTALIIALKEALEMGCEEIEVFSDSELMVKQINGQYQIKNEGIKRLYSQVVQLMKEFRSFSINHVRREYNKRADELANEGID 131
BLAST of NO06G01960 vs. NCBI_GenBank
Match: WP_006584292.1 (ribonuclease H [Thermanaerovibrio velox] >EHM10798.1 ribonuclease HI [Thermanaerovibrio velox DSM 12556]) HSP 1 Score: 118.2 bits (295), Expect = 6.000e-23 Identity = 68/141 (48.23%), Postives = 89/141 (63.12%), Query Frame = 0 Query: 284 KLFFDGGSRGNPGIAGCGAVMYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQVFGDSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREENKVADALANEGMDGRKEGGAVVVEE 425 K +FDG SRGNPG+AG GA++ D+ G +W FLGH RTNN+AEY AL LEE +RG+ SV V GDS LV+ QV G WK+ +R S+ L + + +IPREEN+ AD L+NE +D R++ AV EE Sbjct: 3 KGYFDGASRGNPGVAGAGALLVDD-GGSVIWEYRGFLGH-RTNNEAEYQALIALLEEVRRRGIRSVLVMGDSQLVISQVTGKWKINMPHLRALASRVRELCRGLE-VSFKWIPREENRQADRLSNEAID-RRDLRAVGFEE 139 The following BLAST results are available for this feature:
BLAST of NO06G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G01960 ID=NO06G01960|Name=NO06G01960|organism=Nannochloropsis oceanica|type=gene|length=1879bpback to top protein sequence of NO06G01960.1 >NO06G01960.1-protein ID=NO06G01960.1-protein|Name=NO06G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bpback to top Synonyms
Publications
|