NO06G01940, NO06G01940 (gene) Nannochloropsis oceanica

Overview
NameNO06G01940
Unique NameNO06G01940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length664
Alignment locationchr6:582389..583052 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:582389..583052 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029056Ribokinase-like
Vocabulary: Molecular Function
TermDefinition
GO:0016773phosphotransferase activity, alcohol group as acceptor
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO06G01940 vs. NCBI_GenBank
Match: EWM26219.1 (hypothetical protein Naga_100025g21 [Nannochloropsis gaditana])

HSP 1 Score: 142.1 bits (357), Expect = 1.600e-30
Identity = 74/145 (51.03%), Postives = 95/145 (65.52%), Query Frame = 0 
Query:    1 MPMSQHKAASVAAVGIVVALAAAFLRQRRFK-----TGSSSTEKRHL-----ISVVGDAFCDVIVGGVNHIPEWGTDVLTDTPIALTPGGSACNTVLQLASLLRLFPPCSSSSNTHPSIVLHTALGSDLFGSFMRSKIAEVAQGQ 136
            MP+    AAS+ A+ ++  + A +LR++  K       ++S +K H      IS++GD FCDV+V G+ ++PEWGTD LTD PI LTPGGSACN+ LQLASLLRLFP     S   P +VLHTALG D FGSF+R KI    QGQ
Sbjct:    1 MPVRNRSAASITAIAVLALVGALYLRRQALKKKKQEAENASEDKSHATPHYQISILGDTFCDVVVQGIKNLPEWGTDALTDAPIELTPGGSACNSALQLASLLRLFP---LESYITPQVVLHTALGDDSFGSFLREKIKAAVQGQ 142
[Close]
BLAST of NO06G01940 vs. NCBI_GenBank
Match: XP_002900918.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY59725.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 68.2 bits (165), Expect = 2.900e-8
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 0 
Query:   44 SVVGDAFCDVIVGGV--NHIPEWGTDVLTDTPIALTPGGSACNTVLQLASLLRLFPPCSSSSNTHPSIVLHTALGSDLFGSFMRSKIAE 131
            +V+GDAF DV+ G +  + +P+WG+DV    PI L PGGSA NT   LA+L  L P      +    + LHTA+G+D F + +++ +A+
Sbjct:    6 AVLGDAFVDVVAGSLAPDQLPQWGSDVECSRPIELQPGGSALNTATHLANLSILNP------HHELQVSLHTAVGNDSFANVLKTHLAD 88
[Close]
BLAST of NO06G01940 vs. NCBI_GenBank
Match: XP_009521555.1 (hypothetical protein PHYSODRAFT_345114 [Phytophthora sojae] >EGZ26267.1 hypothetical protein PHYSODRAFT_345114 [Phytophthora sojae])

HSP 1 Score: 67.8 bits (164), Expect = 3.800e-8
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 0 
Query:   44 SVVGDAFCDVIVGGV--NHIPEWGTDVLTDTPIALTPGGSACNTVLQLASLLRLFPPCSSSSNTHP-SIVLHTALGSDLFGSFMRSKIAE 131
            +V+GDAF DV+ G +  + +P+WG DV    PI L PGGSA NT   LA+L       SS +  H   + LHTA+G+D F + +++ +AE
Sbjct:    6 AVLGDAFVDVVAGTLAPDQLPQWGGDVECSRPIQLQPGGSALNTATHLANL-------SSRNPQHELHVALHTAVGNDSFANVLKAHLAE 88
[Close]
BLAST of NO06G01940 vs. NCBI_GenBank
Match: XP_008896138.1 (hypothetical protein PPTG_04067 [Phytophthora parasitica INRA-310] >ETI36200.1 hypothetical protein F443_17640 [Phytophthora parasitica P1569] >ETK76423.1 hypothetical protein L915_17177 [Phytophthora parasitica] >ETL29863.1 hypothetical protein L916_17072 [Phytophthora parasitica] >ETL83091.1 hypothetical protein L917_16899 [Phytophthora parasitica] >ETM36310.1 hypothetical protein L914_16980 [Phytophthora parasitica] >ETN18468.1 hypothetical protein PPTG_04067 [Phytophthora parasitica INRA-310] >ETO64922.1 hypothetical protein F444_17681 [Phytophthora parasitica P1976] >ETP06024.1 hypothetical protein F441_17508 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 67.4 bits (163), Expect = 4.900e-8
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 0 
Query:   44 SVVGDAFCDVIVGGV--NHIPEWGTDVLTDTPIALTPGGSACNTVLQLASLLRLFPPCSSSSNTHP--SIVLHTALGSDLFGSFMRSKIAE 131
            +V+GDAF DV+ G +  + +P+WG+DV    PI L PGGSA NT   LA+L        S  N H    + LHTA+G+D F + +++ +A+
Sbjct:    6 AVLGDAFVDVVAGTLAPDQLPQWGSDVECSRPIELQPGGSALNTATHLANL--------SVRNPHHELEVALHTAVGNDSFANVLKTHLAD 88
[Close]
BLAST of NO06G01940 vs. NCBI_GenBank
Match: ETP34133.1 (hypothetical protein F442_17496 [Phytophthora parasitica P10297])

HSP 1 Score: 67.4 bits (163), Expect = 4.900e-8
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 0 
Query:   44 SVVGDAFCDVIVGGV--NHIPEWGTDVLTDTPIALTPGGSACNTVLQLASLLRLFPPCSSSSNTHP--SIVLHTALGSDLFGSFMRSKIAE 131
            +V+GDAF DV+ G +  + +P+WG+DV    PI L PGGSA NT   LA+L        S  N H    + LHTA+G+D F + +++ +A+
Sbjct:    6 AVLGDAFVDVVAGTLAPDQLPQWGSDVECSRPIELQPGGSALNTATHLANL--------SVRNPHHELEVALHTAVGNDSFANVLKTHLAD 88
[Close]
BLAST of NO06G01940 vs. NCBI_GenBank
Match: KUF97283.1 (Glycylpeptide N-tetradecanoyltransferase [Phytophthora nicotianae])

HSP 1 Score: 67.4 bits (163), Expect = 4.900e-8
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 0 
Query:   44 SVVGDAFCDVIVGGV--NHIPEWGTDVLTDTPIALTPGGSACNTVLQLASLLRLFPPCSSSSNTHP--SIVLHTALGSDLFGSFMRSKIAE 131
            +V+GDAF DV+ G +  + +P+WG+DV    PI L PGGSA NT   LA+L        S  N H    + LHTA+G+D F + +++ +A+
Sbjct:    6 AVLGDAFVDVVAGTLAPDQLPQWGSDVECSRPIELQPGGSALNTATHLANL--------SVRNPHHELEVALHTAVGNDSFANVLKTHLAD 88
[Close]
BLAST of NO06G01940 vs. NCBI_GenBank
Match: KUF98183.1 (Ribokinase [Phytophthora nicotianae])

HSP 1 Score: 67.4 bits (163), Expect = 4.900e-8
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 0 
Query:   44 SVVGDAFCDVIVGGV--NHIPEWGTDVLTDTPIALTPGGSACNTVLQLASLLRLFPPCSSSSNTHP--SIVLHTALGSDLFGSFMRSKIAE 131
            +V+GDAF DV+ G +  + +P+WG+DV    PI L PGGSA NT   LA+L        S  N H    + LHTA+G+D F + +++ +A+
Sbjct:    6 AVLGDAFVDVVAGTLAPDQLPQWGSDVECSRPIELQPGGSALNTATHLANL--------SVRNPHHELEVALHTAVGNDSFANVLKTHLAD 88
[Close]
BLAST of NO06G01940 vs. NCBI_GenBank
Match: OWY97358.1 (hypothetical protein PHMEG_00032131 [Phytophthora megakarya])

HSP 1 Score: 67.4 bits (163), Expect = 4.900e-8
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 0 
Query:   44 SVVGDAFCDVIVG--GVNHIPEWGTDVLTDTPIALTPGGSACNTVLQLASLLRLFPPCSSSSNTHPSIVLHTALGSDLFGSFMRSKIAE 131
            +V+GDAF DV+ G  G N +P+WG DV    PI L PGGSA NT   LA             N + ++ LHTA+G+D F + +++ + E
Sbjct:    5 AVLGDAFVDVVAGTLGPNQLPQWGGDVECSRPIELQPGGSALNTATHLA-------------NLNCNVTLHTAVGNDSFANVLKAHLDE 80
The following BLAST results are available for this feature:
BLAST of NO06G01940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM26219.11.600e-3051.03hypothetical protein Naga_100025g21 [Nannochlorops... [more]
XP_002900918.12.900e-840.45conserved hypothetical protein [Phytophthora infes... [more]
XP_009521555.13.800e-842.22hypothetical protein PHYSODRAFT_345114 [Phytophtho... [more]
XP_008896138.14.900e-840.66hypothetical protein PPTG_04067 [Phytophthora para... [more]
ETP34133.14.900e-840.66hypothetical protein F442_17496 [Phytophthora para... [more]
KUF97283.14.900e-840.66Glycylpeptide N-tetradecanoyltransferase [Phytopht... [more]
KUF98183.14.900e-840.66Ribokinase [Phytophthora nicotianae][more]
OWY97358.14.900e-840.45hypothetical protein PHMEG_00032131 [Phytophthora ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000264NSK000264Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01940.1NO06G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597197gene_6504Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g21gene4310Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01940.1NO06G01940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01940 ID=NO06G01940|Name=NO06G01940|organism=Nannochloropsis oceanica|type=gene|length=664bp
ATGCCGATGTCGCAGCATAAGGCGGCGTCGGTTGCGGCTGTGGGCATTGT
TGTTGCCCTAGCCGCGGCGTTTCTGAGACAAAGGAGGTTTAAGACCGGGA
GCAGCAGCACCGAGAAGCGCCACCTAATCTCGGTCGTGGGAGACGCTTTT
TGCGACGTCATAGTGGGTGGTGTCAACCACATACCGGAGTGGGGCACGGA
CGTGCTGACCGACACTCCGATTGCTTTGACGCCGGGGGGTTCTGCTTGCA
ATACCGTCCTCCAGCTCGCCAGCTTGCTACGTCTTTTTCCTCCATGCTCG
TCCTCATCAAACACTCATCCGAGCATTGTCTTGCACACCGCCTTGGGCAG
TGACCTCTTTGGCTCCTTCATGCGCAGCAAAATTGCGGAGGTCGCTCAGG
GCCAGGACGTCCAAGTCTCCACGGCTTCAACCTCCCCCTCGTTCTCGTCC
TCCTCGTCCTGCTCGTCCTGCTCGTCCTCAGCCACCCGAGCAGAAAATAg
tacgacatgttcaacacacccaaaaacgacgacgacaggcgtttgtatct
gtctctccggcgcggctgaccgcgccttcatcacccatcggggagtcgtc
tctacgttcaacgaaagccacctggatttgccctccctctacaacagCTG
CTTCGTTCACATAG
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protein sequence of NO06G01940.1

>NO06G01940.1-protein ID=NO06G01940.1-protein|Name=NO06G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MPMSQHKAASVAAVGIVVALAAAFLRQRRFKTGSSSTEKRHLISVVGDAF
CDVIVGGVNHIPEWGTDVLTDTPIALTPGGSACNTVLQLASLLRLFPPCS
SSSNTHPSIVLHTALGSDLFGSFMRSKIAEVAQGQDVQVSTASTSPSFSS
SSSCSSCSSSATRAENTASFT*
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Synonyms
Publications