NO06G01860, NO06G01860 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G01860
Unique Name	NO06G01860
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	944
Alignment location	chr6:560676..561619 -

Link to JBrowse

Properties


Property Name	Value
Description	HVA22-like protein J

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:560676..561619 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004345	TB2_DP1_HVA22

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

[Close]

BLAST of NO06G01860 vs. NCBI_GenBank
Match: EWM26208.1 (TB2/DP1/HVA22-related protein [Nannochloropsis gaditana])

HSP 1 Score: 121.7 bits (304), Expect = 3.600e-24
Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 0

Query:   39 NIPESTSSNSTPHRNQIDNNDSHLHDVEHWCLYWLVSSILTLLLERPVDALVLSWVPSYRWIKLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAARGKAWEAAKVGGRKLA 155
            +IPES+++      +  D + S     EHW LYWL+SSI+T LLE+PVDA V+SWVP YRW+KL  FLWLALPRFQGAARLYY+++ P LI +E EI  AR   W+  K      A
Sbjct:   12 SIPESSAAAHADVPDVFDESQS----AEHWSLYWLISSIITFLLEKPVDA-VISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISNARDSVWKMTKKSSHSAA 122

[Close]

BLAST of NO06G01860 vs. NCBI_GenBank
Match: ERS97106.1 (hypothetical protein HMPREF1624_06435 [Sporothrix schenckii ATCC 58251])

HSP 1 Score: 72.0 bits (175), Expect = 3.300e-9
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 0

Query:   68 WCLYWLVSSILTLLLERPVDALVLSWVPSYRWIKLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAARGKAWEAAKVGG 151
            W +YW+V + + LL+E   D  +L WVP Y + +L F L+L LP+ QGA  LY   VHPW+++HET+ID   G A+   +  G
Sbjct:   37 WLMYWVVLACV-LLVESWTD-WILVWVPFYHYFRLFFLLYLVLPQTQGARVLYQSHVHPWIVEHETQIDELIGSAYARLRSAG 117

[Close]

BLAST of NO06G01860 vs. NCBI_GenBank
Match: XP_016588990.1 (HVA22 domain membrane protein [Sporothrix schenckii 1099-18] >KJR86314.1 HVA22 domain membrane protein [Sporothrix schenckii 1099-18])

HSP 1 Score: 72.0 bits (175), Expect = 3.300e-9
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 0

Query:   68 WCLYWLVSSILTLLLERPVDALVLSWVPSYRWIKLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAARGKAWEAAKVGG 151
            W +YW+V + + LL+E   D  +L WVP Y + +L F L+L LP+ QGA  LY   VHPW+++HET+ID   G A+   +  G
Sbjct:   37 WLMYWVVLACV-LLVESWTD-WILVWVPFYHYFRLFFLLYLVLPQTQGARVLYQSHVHPWIVEHETQIDELIGSAYARLRSAG 117

[Close]

BLAST of NO06G01860 vs. NCBI_GenBank
Match: XP_010037304.1 (PREDICTED: putative HVA22-like protein g [Eucalyptus grandis] >KCW48992.1 hypothetical protein EUGRSUZ_K02605 [Eucalyptus grandis] >KCW48993.1 hypothetical protein EUGRSUZ_K02605 [Eucalyptus grandis])

HSP 1 Score: 71.6 bits (174), Expect = 4.300e-9
Identity = 35/96 (36.46%), Postives = 60/96 (62.50%), Query Frame = 0

Query:   55 IDNNDSHLHDVEHWCLYWLVSSILTLLLERPVDALVLSWVPSYRWIKLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAA----RGKAWEAA 147
            ++ + +H  ++  WC YW++ +ILT +LER  DA V+SWVP Y  +KL F ++L  P+ +G+  +Y  ++ P++  HET+ +      R KAW+ A
Sbjct:   27 MEKSRAHSDELRFWCQYWIIMAILT-ILERIADA-VISWVPMYGELKLAFIIYLWYPKTKGSGYIYERLLRPFVTDHETDFETRLTQWRDKAWDLA 120

[Close]

BLAST of NO06G01860 vs. NCBI_GenBank
Match: KIH93575.1 (hypothetical protein SPBR_04262 [Sporothrix brasiliensis 5110])

HSP 1 Score: 71.6 bits (174), Expect = 4.300e-9
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 0

Query:   68 WCLYWLVSSILTLLLERPVDALVLSWVPSYRWIKLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAARGKAWEAAKVGG 151
            W +YW+V + + LL+E   D  +L WVP Y + +L F L+L LP+ QGA  LY   VHPW+++HET+ID   G A+   +  G
Sbjct:   37 WLMYWVVLACV-LLVESWTD-WILVWVPFYHYFRLFFLLYLVLPQTQGARVLYQSHVHPWIVEHETQIDEFIGSAYARLRSAG 117

[Close]

BLAST of NO06G01860 vs. NCBI_GenBank
Match: XP_016608949.1 (hypothetical protein SPPG_04010 [Spizellomyces punctatus DAOM BR117] >KND00910.1 hypothetical protein SPPG_04010 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 71.6 bits (174), Expect = 4.300e-9
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 0

Query:   65 VEHWCLYWLVSSILTLLLERPVDALVLSWVPSYRWIKLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAARGKAWEAAK 148
            ++ W ++W+V S  T +LE   D L L W+P Y  +KLI  LWL LP  QG+  LY   + P L +HE EID+A GKA EAA+
Sbjct:   36 LDRWLIHWIVMSFFT-ILEIAGDTL-LFWLPLYYELKLIIILWLVLPYTQGSLVLYNQFLQPALAKHEPEIDSAMGKAQEAAR 116

[Close]

BLAST of NO06G01860 vs. NCBI_GenBank
Match: KJK61367.1 (TB2/DP1 HVA22 family protein [Aspergillus parasiticus SU-1])

HSP 1 Score: 71.2 bits (173), Expect = 5.600e-9
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 0

Query:   68 WCLYWLVSSILTLLLERPVDALVLSWVPSYRWIKLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAARGKAWEAAKVGG 151
            W +YW+V S   +L+       +L W+P Y WI+L FF +L LP+ QGA  LY   V P+L QHE EI+   G++ E AK  G
Sbjct:   37 WLMYWVVLS--AILMAESWTVWILGWLPFYSWIRLFFFSYLVLPQTQGAKILYQTYVDPFLAQHEREIEEFIGRSHERAKALG 117

[Close]

BLAST of NO06G01860 vs. NCBI_GenBank
Match: XP_022391855.1 (HVA22 domain membrane protein [Aspergillus bombycis] >OGM48138.1 HVA22 domain membrane protein [Aspergillus bombycis])

HSP 1 Score: 71.2 bits (173), Expect = 5.600e-9
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 0

Query:   68 WCLYWLVSSILTLLLERPVDALVLSWVPSYRWIKLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAARGKAWEAAKVGG 151
            W +YW+V S   +L+       +L W+P Y WI+L FF +L LP+ QGA  LY   V P+L QHE EI+   G++ E AK  G
Sbjct:   37 WLMYWVVLS--AILMAESWTVWILGWLPFYSWIRLFFFSYLVLPQTQGAQILYQTYVDPFLAQHEREIEEFIGRSHERAKALG 117

[Close]

BLAST of NO06G01860 vs. NCBI_GenBank
Match: XP_001826303.1 (unnamed protein product [Aspergillus oryzae RIB40] >XP_002377993.1 HVA22 domain membrane protein [Aspergillus flavus NRRL3357] >BAE65170.1 unnamed protein product [Aspergillus oryzae RIB40] >EED52829.1 HVA22 domain membrane protein [Aspergillus flavus NRRL3357] >EIT78205.1 HVA22 domain membrane protein [Aspergillus oryzae 3.042] >KDE84937.1 HVA22 domain membrane protein [Aspergillus oryzae 100-8] >KOC10952.1 HVA22 domain membrane protein [Aspergillus flavus AF70] >OOO07125.1 TB2/DP1/HVA22-related protein [Aspergillus oryzae])

HSP 1 Score: 71.2 bits (173), Expect = 5.600e-9
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 0

Query:   68 WCLYWLVSSILTLLLERPVDALVLSWVPSYRWIKLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAARGKAWEAAKVGG 151
            W +YW+V S   +L+       +L W+P Y WI+L FF +L LP+ QGA  LY   V P+L QHE EI+   G++ E AK  G
Sbjct:   37 WLMYWVVLS--AILMAESWTVWILGWLPFYSWIRLFFFSYLVLPQTQGARILYQTYVDPFLAQHEREIEEFIGRSHERAKALG 117

[Close]

BLAST of NO06G01860 vs. NCBI_GenBank
Match: PIG80533.1 (HVA22 domain membrane protein [Aspergillus arachidicola])

HSP 1 Score: 71.2 bits (173), Expect = 5.600e-9
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 0

Query:   68 WCLYWLVSSILTLLLERPVDALVLSWVPSYRWIKLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAARGKAWEAAKVGG 151
            W +YW+V S   +L+       +L W+P Y WI+L FF +L LP+ QGA  LY   V P+L QHE EI+   G++ E AK  G
Sbjct:   37 WLMYWVVLS--AILMAESWTVWILGWLPFYSWIRLFFFSYLVLPQTQGAKILYQTYVDPFLAQHEREIEEFIGRSHERAKALG 117

The following BLAST results are available for this feature:

BLAST of NO06G01860 vs. NCBI_GenBank

BLAST of NO06G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM26208.1	3.600e-24	53.45	TB2/DP1/HVA22-related protein [Nannochloropsis gad...	[more]
ERS97106.1	3.300e-9	43.37	hypothetical protein HMPREF1624_06435 [Sporothrix ...	[more]
XP_016588990.1	3.300e-9	43.37	HVA22 domain membrane protein [Sporothrix schencki...	[more]
XP_010037304.1	4.300e-9	36.46	PREDICTED: putative HVA22-like protein g [Eucalypt...	[more]
KIH93575.1	4.300e-9	43.37	hypothetical protein SPBR_04262 [Sporothrix brasil...	[more]
XP_016608949.1	4.300e-9	46.99	hypothetical protein SPPG_04010 [Spizellomyces pun...	[more]
KJK61367.1	5.600e-9	43.37	TB2/DP1 HVA22 family protein [Aspergillus parasiti...	[more]
XP_022391855.1	5.600e-9	43.37	HVA22 domain membrane protein [Aspergillus bombyci...	[more]
XP_001826303.1	5.600e-9	43.37	unnamed protein product [Aspergillus oryzae RIB40]...	[more]
PIG80533.1	5.600e-9	43.37	HVA22 domain membrane protein [Aspergillus arachid...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR028	ncniR028	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000273	NSK000273	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G01860.1	NO06G01860.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672408	gene_6495	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100025g14	gene4317	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G01860.1	NO06G01860.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO06G01860 ID=NO06G01860|Name=NO06G01860|organism=Nannochloropsis oceanica|type=gene|length=944bp
ATGATTTATCACCCCTTTCGgtacgtccttttttgtctccgtctgtttcc
tttccctctccctccccatgatggggacccaatcgatactcccttaagca
cccaccaccactcgatccccatcacagCATCGGCATCCTCTACGTCTATC
CCATCATTGCCTCGTGCCGCACTGCCCTTCGATACCATCCGTATTTGCAG
AAGGAGCGGCTGCAACAGCCCAACATCCCTGAGTCTACCTCTAGCAATTC
TACCCCCCATCGAAATCAAATCGACAATAACGACAGCCACCTGCACGACG
TTGAGCATTGGTGCCTCTACTGGCTTGTCTCCTCCATCCTCACCCTCCTC
CTTGAGCGTCCCGTCGACGCCCTGGTGTTGTCTTGGGTGCCCTCCTATCG
GTGGATCAAACTCATCTTCTTCCTCTGGTTGGCCCTCCCTCGTTTCCAAG
GAGCGGCGCGACTTTACTATTTGATAGTCCACCCCTGGTTGATACAACAT
GAGACTGAAATCGATGCGGCACGGGGTAAAGCATGGGAGGCAGCGAAGGT
GGGAGGAAGGAAACTGGCGGTGGCAGCAGTTTCAGTGGCGACAGCAGCTG
TGGCGGGGCCGGGGGAGGGGGAGGGGGAGAGAGGACAAGGACAAAGGCAA
GGAAGTGCAGGTGGAGGGAGAGTAGGAGGAGGGTTGGCAGTGTTGGGAGG
TGTGAGCGGGTTTGGGGGGTTACGTGCGCTAGTTTCGGAGGCTTTGTGGG
TGGTGCTTGCTTCTCTGACAGTCCGAGCTGGAGGAGAAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGAGGGAAGAGGAGAGGGAGGAAAAGG
GGGAGGGGGAGAAAGAGGATCAGTGACAACAGCAGCAGTGGCACAGACAA
ACAATAGGCAGAGAAGAGGAAGGCCGCGGCATGGTTTGAATTGA

protein sequence of NO06G01860.1

>NO06G01860.1-protein ID=NO06G01860.1-protein|Name=NO06G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MIYHPFRIGILYVYPIIASCRTALRYHPYLQKERLQQPNIPESTSSNSTP
HRNQIDNNDSHLHDVEHWCLYWLVSSILTLLLERPVDALVLSWVPSYRWI
KLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAARGKAWEAAKVGG
RKLAVAAVSVATAAVAGPGEGEGERGQGQRQGSAGGGRVGGGLAVLGGVS
GFGGLRALVSEALWVVLASLTVRAGGEGGGGGGGGGGGGEGRGEGGKGGG
GERGSVTTAAVAQTNNRQRRGRPRHGLN*

Synonyms

Publications