NO06G01830, NO06G01830 (gene) Nannochloropsis oceanica

Overview
NameNO06G01830
Unique NameNO06G01830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length345
Alignment locationchr6:553980..554324 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA polymerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:553980..554324 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
Homology
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BLAST of NO06G01830 vs. NCBI_GenBank
Match: EWM26253.1 (dna polymerase delta catalytic subunit [Nannochloropsis gaditana])

HSP 1 Score: 129.0 bits (323), Expect = 9.300e-27
Identity = 67/116 (57.76%), Postives = 79/116 (68.10%), Query Frame = 0 
Query:    4 PLYKKAEFPPFVLAKKMRLDRTEYIKQVRMPMIRMLQLITPVAEAEELFKPAFRAAPAGKVSSASTISHYFARSTDTHCVNCRARLPAKSVSAEKGH----GGASVP---LCESCK 113
            PLY+KAE PP  L   M LD  EY+KQ+RMPM+RMLQL+ P+AEAEELFKP++RAAPAGKVS  S+ISH+FA  T   C+NCR +LP       K H    GG   P   LC SCK
Sbjct:  804 PLYRKAESPPLALTNNMTLDLMEYLKQIRMPMVRMLQLVMPMAEAEELFKPSYRAAPAGKVSGVSSISHFFAIDTGLRCLNCRTKLPKSREKNTKRHDRSQGGLERPGTRLCASCK 919
The following BLAST results are available for this feature:
BLAST of NO06G01830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26253.19.300e-2757.76dna polymerase delta catalytic subunit [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01830.1NO06G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557988gene_6491Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01830.1NO06G01830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01830 ID=NO06G01830|Name=NO06G01830|organism=Nannochloropsis oceanica|type=gene|length=345bp
ATGGATGTACCCTTGTACAAGAAAGCCGAGTTTCCGCCGTTTGTGCTAGC
GAAGAAAATGAGATTGGATCGGACAGAGTACATAAAGCAGGTGCGGATGC
CCATGATAAGGATGTTGCAGCTTATCACGCCCGTGGCCGAGGCCGAGGAA
CTTTTCAAGCCGGCCTTTCGTGCCGCTCCGGCGGGTAAGGTCTCAAGTGC
GTCGACCATTAGCCACTACTTTGCGCGCAGCACGGACACGCATTGCGTTA
ACTGTCGGGCACGTTTACCTGCGAAATCTGTGAGTGCGGAGAAGGGCCAC
GGTGGTGCCTCGGTGCCCCTGTGCGAGTCCTGCAAAGGTCCTTGA
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protein sequence of NO06G01830.1

>NO06G01830.1-protein ID=NO06G01830.1-protein|Name=NO06G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MDVPLYKKAEFPPFVLAKKMRLDRTEYIKQVRMPMIRMLQLITPVAEAEE
LFKPAFRAAPAGKVSSASTISHYFARSTDTHCVNCRARLPAKSVSAEKGH
GGASVPLCESCKGP*
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Synonyms
Publications