NO06G01820, NO06G01820 (gene) Nannochloropsis oceanica

Overview
NameNO06G01820
Unique NameNO06G01820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length641
Alignment locationchr6:552425..553065 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA polymerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:552425..553065 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003677DNA binding
GO:0016779nucleotidyltransferase activity
GO:0016740transferase activity
GO:0003887DNA-directed DNA polymerase activity
GO:0003677DNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR006134DNA-dir_DNA_pol_B_multi_dom
Vocabulary: Biological Process
TermDefinition
GO:0071897DNA biosynthetic process
GO:0006260DNA replication
Homology
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BLAST of NO06G01820 vs. NCBI_GenBank
Match: EWM26253.1 (dna polymerase delta catalytic subunit [Nannochloropsis gaditana])

HSP 1 Score: 104.4 bits (259), Expect = 2.700e-19
Identity = 68/210 (32.38%), Postives = 92/210 (43.81%), Query Frame = 0 
Query:    2 DHLGWNRAIQAGLSPAVLALDVLRNKNGVVEMVEVARITGMP------------------------------------------------------------------------------------------FSTLVNDPSQLQKGKGDTEVFTNPGGAQFVKSKLRHGIMPSLLVDLLGARHHAQRKMRDPGATEGEKRVLDARQKAFK 122
            D  GW RA++AGLSPAVLALDV+  KN V E+VE+AR+TGM                                                                                           +STL+ +PS+ +       +F+ P GA FVKS++R G++PSLL DLL AR  AQ+ +++P  +EG++RVLDARQKAFK
Sbjct:  350 DSTGWARAMEAGLSPAVLALDVIAKKNAVAELVEIARVTGMSLAHVYIRGQMARVTSMLQIHASRQGVVVPTSTEGLLDKAALVKSALLLDPSQPSPSNPEGIGTVGLHTNPVAVLDFRSLYPSIMIHHNLCYSTLIRNPSETRTCLSKDGIFSTPIGACFVKSEVRRGVIPSLLADLLEARSQAQKMLKEPYVSEGQRRVLDARQKAFK 559
The following BLAST results are available for this feature:
BLAST of NO06G01820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26253.12.700e-1932.38dna polymerase delta catalytic subunit [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000277NSK000277Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01820.1NO06G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
DPD1gene4320Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01820.1NO06G01820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01820 ID=NO06G01820|Name=NO06G01820|organism=Nannochloropsis oceanica|type=gene|length=641bp
ATGGACCACCTGGGCTGGAACCGCGCTATACAAGCAGGGTTAAGTCCCGC
AGTGCTTGCCTTGGACGTGCTGCGCAACAAGAATGGGGTGGTCGAGATGG
TAGAGGTGGCACGCATCACCGGTATGCCATTTTCgtacgtgtatattcga
ggtccaatggcgcgcgtgaccagcctgctgacgccacacgccaagacgtt
atcgttcccaccaccaccgaaggacttttggacaaagcggggctcaccaa
gtgcgccatattgctggatccttctgttccgtctccatcgagtcccgagg
gtatcagtaccgtcggtctgcatacaagtcccatcgctgttctagatttc
agaagtctgtatccttctatcatggtacaacacaattagtgttacagCAC
TCTGGTCAACGACCCCTCGCAGCTGCAGAAAGGCAAAGGAGATACGGAAG
TCTTCACGAACCCTGGTGGTGCGCAGTTTGTGAAGTCTAAATTAAGACAC
GGCATCATGCCGAGTCTCTTGGTTGACCTCCTTGGCGCTCGGCATCATGC
ACAACGAAAGATGAGAGACCCGGGCGCTACCGAGGGTGAGAAACGCGTGC
TGGATGCGCGGCAGAAGGCGTTCAAAGGCACGTTATGGTGA
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protein sequence of NO06G01820.1

>NO06G01820.1-protein ID=NO06G01820.1-protein|Name=NO06G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MDHLGWNRAIQAGLSPAVLALDVLRNKNGVVEMVEVARITGMPFSTLVND
PSQLQKGKGDTEVFTNPGGAQFVKSKLRHGIMPSLLVDLLGARHHAQRKM
RDPGATEGEKRVLDARQKAFKGTLW*
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Synonyms
Publications