NO06G01680, NO06G01680 (gene) Nannochloropsis oceanica

Overview
NameNO06G01680
Unique NameNO06G01680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length759
Alignment locationchr6:520826..521584 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:520826..521584 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO06G01680 vs. NCBI_GenBank
Match: EWM26244.1 (hypothetical protein Naga_100025g1 [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 7.200e-32
Identity = 84/148 (56.76%), Postives = 98/148 (66.22%), Query Frame = 0
Query:    7 LPDLSFPPARRPSSDSIPPRSCPPSFPEEAGDTSILYQAVKSLYDLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLFSKAEIETHSVTRGGNKLVIDWKITYYPRILPS-FCAISVHTITILTLMEPDEGTPERG 154
            LP L      RP S   PP S   S  E   D ++LY AVKSLYDL+GDVK V+  HY+PETASFIDP+V V + T  C+GQFRALRGLFS+AEI+T SVTRGGN LVIDW+I Y+PR LPS  C +S H   +      D G  ERG
Sbjct:   10 LPTLIPVSPSRPHSR--PPHSRTVS-KESMNDATVLYTAVKSLYDLTGDVKAVFGKHYVPETASFIDPLVTVTHDTKACVGQFRALRGLFSRAEIKTRSVTRGGNHLVIDWQIKYFPRGLPSPVCLLSAHHHNL------DLGDRERG 148          
BLAST of NO06G01680 vs. NCBI_GenBank
Match: OLP94698.1 (hypothetical protein AK812_SmicGene23244 [Symbiodinium microadriaticum])

HSP 1 Score: 92.0 bits (227), Expect = 2.800e-15
Identity = 57/161 (35.40%), Postives = 83/161 (51.55%), Query Frame = 0
Query:   42 LYQAVKSLYDLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLFSKAEIETHSVTRGGNKLVIDWKITYYPRILPSFCAISVHTITILTLMEPDEGTPERGKASTRILEHVDHWSVHELISSVPIVSFVYTSLWRPAVGKGSSVLTNVLY 203
            L +A  SLYDL  D   V +  Y   +  F DP+V+V + TS    QFR+LR LF + +     +   G KLVI+  ITY P+ +P  CA+ +   T LT              + RIL H DHWS+H ++ ++    ++Y S WR  +G  SSV   ++Y
Sbjct:   17 LAKAACSLYDLQVDSDAVVDSMY-ASSCKFSDPLVLV-SGTSHVKAQFRSLRMLFREIDFHVDGIGLLGEKLVIEATITYVPKFMPRACALRLKQFTTLT------------STAGRILLHEDHWSIHGVLVAIAGFGWLYQS-WRQLLGTASSVAVELVY 162          
BLAST of NO06G01680 vs. NCBI_GenBank
Match: XP_009839928.1 (hypothetical protein H257_13932 [Aphanomyces astaci] >ETV70545.1 hypothetical protein H257_13932 [Aphanomyces astaci])

HSP 1 Score: 74.7 bits (182), Expect = 4.600e-10
Identity = 51/166 (30.72%), Postives = 82/166 (49.40%), Query Frame = 0
Query:   35 EAGDTSILYQAVKSLYDLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLFSKAEIE-THSVTRGGNKLVIDWKITYYPRILPSFCAISVHTITILTLMEPDEGTPERGKASTRILEHVDHWSVHELISSVPIVSFVYTSLWRPAVGKGSSVLTN 200
            E G    +   + S+YD + D   +    Y P+ ASF DP V V +   +    FRA+  + SK++ E       G + L ID K+T+  +  PS+   +    T++ L +             +I++H DHW ++ ++ S+PIVSFVY  ++R A G  SS L N
Sbjct:   15 EMGMAQAMTLKILSMYDRATDSDAIVQELYHPD-ASFSDPWVEV-HGRENVAAHFRAIPSVISKSQAELIRGSMAGVSVLTIDSKVTFRFKPFPSYLGCTFRMFTVVELED------------QQIIKHTDHWDLNTVLESIPIVSFVY-RIFRTAFGNASSHLIN 165          
BLAST of NO06G01680 vs. NCBI_GenBank
Match: XP_009839929.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV70546.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 74.7 bits (182), Expect = 4.600e-10
Identity = 51/166 (30.72%), Postives = 82/166 (49.40%), Query Frame = 0
Query:   35 EAGDTSILYQAVKSLYDLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLFSKAEIE-THSVTRGGNKLVIDWKITYYPRILPSFCAISVHTITILTLMEPDEGTPERGKASTRILEHVDHWSVHELISSVPIVSFVYTSLWRPAVGKGSSVLTN 200
            E G    +   + S+YD + D   +    Y P+ ASF DP V V +   +    FRA+  + SK++ E       G + L ID K+T+  +  PS+   +    T++ L +             +I++H DHW ++ ++ S+PIVSFVY  ++R A G  SS L N
Sbjct:   15 EMGMAQAMTLKILSMYDRATDSDAIVQELYHPD-ASFSDPWVEV-HGRENVAAHFRAIPSVISKSQAELIRGSMAGVSVLTIDSKVTFRFKPFPSYLGCTFRMFTVVELED------------QQIIKHTDHWDLNTVLESIPIVSFVY-RIFRTAFGNASSHLIN 165          
BLAST of NO06G01680 vs. NCBI_GenBank
Match: KNE54790.1 (hypothetical protein AMAG_00744 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 67.0 bits (162), Expect = 9.500e-8
Identity = 53/175 (30.29%), Postives = 84/175 (48.00%), Query Frame = 0
Query:   33 PEEAGDTSILYQAVKSLYDLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCI-GQFRALRGLFSKAEIETHSVTRG----GNKLV-IDWKITYYPRILPSFCAISVHTITILTLMEPDEGTPERGKASTRILEHVDHWSVHELISSVPIVSFVYTSLWRPAVGKGSSVLTNVL 202
            P       I      ++Y +  D +      Y+ E A+F DP+V+   +TSD +   F   +  F+  E +  SVT G    GN +V +D  I Y  R+LP    ++V T++   +   D G       S R++ H D WSV +L+  +PIV  +Y+SL RP     +S+L  +L
Sbjct:   43 PRPPAPRDIALNVHAAMYSVQPDAQAAAARDYLDENATFADPIVIA--ATSDSVKTAFMGNKLAFALVEPKITSVTEGTDDAGNHVVAVDADIAYTLRLLP--IKLTVRTLSKFVI---DSG-------SNRVVFHEDIWSVADLMEQIPIVGTLYSSLARPFASSMTSMLVAML 203          
BLAST of NO06G01680 vs. NCBI_GenBank
Match: GAX92641.1 (Hypothetical protein PINS_000532 [Pythium insidiosum])

HSP 1 Score: 66.6 bits (161), Expect = 1.200e-7
Identity = 50/158 (31.65%), Postives = 78/158 (49.37%), Query Frame = 0
Query:   42 LYQAVKSLYDLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLF--SKAEIETHSVTRGGNKLVIDWKITYYPRILPSFCAISVHTITILTLMEPDEGTPERGKASTRILEHVDHWSVHELISSVPIVSFVYTSLWRPAVGKGSSVL 198
            L +++ SLYD+S    E+    Y  + A F DP++ VK    +   QFR+L      SKA +   S+  G + L ID    Y  +  PS   + +   +++ L        + GK    +  H DHW V+ +IS++PIVSF+Y   +RP  G  SS +
Sbjct:    9 LAESILSLYDVSTATDEIIAKLYHAD-AVFSDPMIQVK-GVENVQAQFRSLPKFIKSSKATLVRGSMA-GSSVLTIDSSQVYRLKPFPSLFKVVLRVFSVIEL--------KNGK----VASHTDHWDVYSVISNIPIVSFLYNQ-FRPMFGAASSAV 150          
BLAST of NO06G01680 vs. NCBI_GenBank
Match: XP_008619540.1 (hypothetical protein SDRG_15154 [Saprolegnia diclina VS20] >EQC27040.1 hypothetical protein SDRG_15154 [Saprolegnia diclina VS20])

HSP 1 Score: 64.7 bits (156), Expect = 4.700e-7
Identity = 46/167 (27.54%), Postives = 77/167 (46.11%), Query Frame = 0
Query:   35 EAGDTSILYQAVKSLYDLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLFSKAEIE-THSVTRGGNKLVIDWKITYYPRILPSFCAISVHTITILTLMEPDEGTPERGKASTRILEHVDHWSVHELISSVPIVSFVYTSLWRPAVGKGSSVLTNV 201
            E G    +   + SLYD + +V  +    Y PE A+F DP+V V +       QFR L    +++          G + L ID  +TY  +  P +   ++   T++ L +             +++ H DHW +  ++ +VP++SF Y  L R +VG  SS + NV
Sbjct:   16 EMGMAQRMTLKILSLYDSTTNVDAIIQELYHPE-ATFSDPLVEV-SGRDKVAAQFRVLPSFVAQSHATLIRGSMAGVSILTIDSTVTYKLKPFPEYMGGALRMFTVIELED------------QKVISHTDHWDIRSVLENVPMLSFFYRHL-RTSVGSASSHVINV 167          
BLAST of NO06G01680 vs. NCBI_GenBank
Match: XP_012206371.1 (hypothetical protein SPRG_11779 [Saprolegnia parasitica CBS 223.65] >KDO22935.1 hypothetical protein SPRG_11779 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 64.7 bits (156), Expect = 4.700e-7
Identity = 46/167 (27.54%), Postives = 77/167 (46.11%), Query Frame = 0
Query:   35 EAGDTSILYQAVKSLYDLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLFSKAEIE-THSVTRGGNKLVIDWKITYYPRILPSFCAISVHTITILTLMEPDEGTPERGKASTRILEHVDHWSVHELISSVPIVSFVYTSLWRPAVGKGSSVLTNV 201
            E G    +   + SLYD + +V  +    Y PE A+F DP+V V +       QFR L    +++          G + L ID  +TY  +  P +   ++   T++ L +             +++ H DHW +  ++ +VP++SF Y  L R +VG  SS + NV
Sbjct:   16 EMGMAQRMTLKILSLYDSTTNVDAIIQELYHPE-ATFSDPLVEV-SGRDKVAAQFRVLPSFVAQSHATLIRGSMAGVSILTIDSTVTYKLKPFPEYMGGALRMFTVIELED------------QKVISHTDHWDIRSVLENVPMLSFFYRHL-RTSVGSASSHVINV 167          
BLAST of NO06G01680 vs. NCBI_GenBank
Match: CEM35036.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 64.7 bits (156), Expect = 4.700e-7
Identity = 45/177 (25.42%), Postives = 77/177 (43.50%), Query Frame = 0
Query:   38 DTSILYQAVKSLYDLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLFSKAEI--------ETHSVTRGGNKLVIDWKITYYPRILPSFCAISVHTITILTLMEPDEGTPERGKASTRILEHVDHWSVHELISSVPIVSFVYTSLWRPAVGKGSSVLTNVLYGLFV 207
            DT  L + ++++Y       ++         A F DP++ V +   D   QF +LR LFSK E          T         ++   K+ Y  R++P    I   T  ++             +++T+I  HVD WS+  L S + I+  +Y + WRP++G+ +S L     G +V
Sbjct:    9 DTGKLLKQLETVYSAPFGEADLVIAALYDADAQFEDPIMKV-SGIDDVRSQFLSLRTLFSKVEFIGEPTLLTPTQDALPSPPSVLFKAKVRYTFRLIPLSLTIVQTTHVVM------------DESATKITSHVDEWSLASLFSGITILGRIYDAYWRPSIGRLTSWLIRQSIGFYV 172          
BLAST of NO06G01680 vs. NCBI_GenBank
Match: OQR92141.1 (hypothetical protein ACHHYP_04059 [Achlya hypogyna])

HSP 1 Score: 64.3 bits (155), Expect = 6.200e-7
Identity = 45/167 (26.95%), Postives = 75/167 (44.91%), Query Frame = 0
Query:   35 EAGDTSILYQAVKSLYDLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLFSKAEIE-THSVTRGGNKLVIDWKITYYPRILPSFCAISVHTITILTLMEPDEGTPERGKASTRILEHVDHWSVHELISSVPIVSFVYTSLWRPAVGKGSSVLTNV 201
            E G    +   + SLYD + +V  +    Y P+ A+F DP+V V+        QFR L    +++          G + L ID  +TY  +  P +   ++   T++ L +             +++ H DHW +  +I +VP+ SF Y  L R  +G  SS + NV
Sbjct:   14 EMGMAQRMTLKILSLYDSTTNVDAIVQELYHPD-ATFSDPLVEVR-GRDKVAAQFRVLPSFVAQSHATLIRGSMAGVSILTIDSTVTYKLKPFPEYMGGALRMFTVIELED------------QKVISHTDHWDIRSVIENVPVASFFYRHL-RTTIGSASSHVINV 165          
The following BLAST results are available for this feature:
BLAST of NO06G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EWM26244.17.200e-3256.76hypothetical protein Naga_100025g1 [Nannochloropsi... [more]
OLP94698.12.800e-1535.40hypothetical protein AK812_SmicGene23244 [Symbiodi... [more]
XP_009839928.14.600e-1030.72hypothetical protein H257_13932 [Aphanomyces astac... [more]
XP_009839929.14.600e-1030.72hypothetical protein, variant [Aphanomyces astaci]... [more]
KNE54790.19.500e-830.29hypothetical protein AMAG_00744 [Allomyces macrogy... [more]
GAX92641.11.200e-731.65Hypothetical protein PINS_000532 [Pythium insidios... [more]
XP_008619540.14.700e-727.54hypothetical protein SDRG_15154 [Saprolegnia dicli... [more]
XP_012206371.14.700e-727.54hypothetical protein SPRG_11779 [Saprolegnia paras... [more]
CEM35036.14.700e-725.42unnamed protein product [Vitrella brassicaformis C... [more]
OQR92141.16.200e-726.95hypothetical protein ACHHYP_04059 [Achlya hypogyna... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR057ncniR057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000287NSK000287Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01680.1NO06G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615852gene_11616Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g1gene4328Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01680.1NO06G01680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01680 ID=NO06G01680|Name=NO06G01680|organism=Nannochloropsis oceanica|type=gene|length=759bp
ATGTCATTCTCCAAGATATTACCTGATCTCTCCTTTCCCCCCGCCCGTCG
ACCTTCCTCCGACTCAATCCCTCCGCGTTCGTGCCCGCCCTCCTTCCCGG
AAGAGGCCGGTGATACATCCATCCTCTACCAGGCTGTCAAGTCTCTTTAC
GACCTCAGCGGTGACGTCAAAGAAGTTTACAACATGCACTATATACCAGA
GACTGCTTCATTCATCGACCCTGTCGTCATGGTCAAGAATAGCACTTCTG
ATTGCATCGGACAATTCCGGGCCTTGCGTGGCCTCTTCTCCAAGGCCGAG
ATCGAGACCCACAGCGTCACCCGCGGGGGGAACAAACTAGTTATCGATTG
GAAAATCACTTACTATCCTCGAATTCTGCCATCATTTTGTGCCATATCTG
TTCATACCATCACAATTCTTACTCTCATGGAGCCTGACGAGGGCACGCCT
GAAAGAGGTAAGGCTTCTACGCGAATTTTGGAGCATGTAGACCATTGGTC
TGTGCACGAATTAATTTCTTCGGTGCCAATTGTATCATTCGTATATACTT
CCTTGTGGCGCCCGGCGGTGGGGAAGGGAAGTAGCGTGCTGACGAATGTG
TTGTATGGTTTGTTTGTTGCGAAAGGACCAACAGGGAAAAATGGGAGCCC
TGCTGAGTGCAATAGTGGAATTGCTGGAGGAGGAGGAGGAAAACAAGGAG
GAGGAGGAGGAGAAGAAGAAGAAGGAGGTGCTGTGGTGGGAGGAGGAGAA
GGCGAGTGA
back to top

protein sequence of NO06G01680.1

>NO06G01680.1-protein ID=NO06G01680.1-protein|Name=NO06G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MSFSKILPDLSFPPARRPSSDSIPPRSCPPSFPEEAGDTSILYQAVKSLY
DLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLFSKAE
IETHSVTRGGNKLVIDWKITYYPRILPSFCAISVHTITILTLMEPDEGTP
ERGKASTRILEHVDHWSVHELISSVPIVSFVYTSLWRPAVGKGSSVLTNV
LYGLFVAKGPTGKNGSPAECNSGIAGGGGGKQGGGGGEEEEGGAVVGGGE
GE*
back to top
Synonyms
Publications