NO06G01550, NO06G01550 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G01550 vs. NCBI_GenBank
Match: EWM26191.1 (u2 small nuclear ribonucleoprotein a [Nannochloropsis gaditana]) HSP 1 Score: 343.6 bits (880), Expect = 9.600e-91 Identity = 177/232 (76.29%), Postives = 200/232 (86.21%), Query Frame = 0 Query: 1 MRITADVVLHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTIDLCDNEIKRLDNFPRMRRIKTLLLCNNNIARIGTALGEQIPELEALVLTNNKLASLSEIDHXXXXXXXXXXXXVDNPVARTSHYRPYILHKLPNLKILDFKKIKLDERKAANKLFKSDAGKQQLADIADEGKAIASEAASKAPEKRAMTDEERRLARAMIDSATTPEELELVQRQLRAGIFKAPEP 233 MRITADVV+HARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDT+DL DNEI+RLDNFPRMRR+KTLLLCNN+IAR G+ALGEQI ELEALVLTNNK+ASLSEIDH VDNPV R+ HYR YILHKLP+L +LDF+K+K DER+AA KLF+S AG+Q L+ IADEGK +A+E+A K EKR MT+EE+RLA+AMID ATTPEELE V+RQLRAGIFKAP P Sbjct: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGP 232
BLAST of NO06G01550 vs. NCBI_GenBank
Match: EFX71324.1 (hypothetical protein DAPPUDRAFT_60299 [Daphnia pulex]) HSP 1 Score: 211.5 bits (537), Expect = 5.700e-51 Identity = 112/226 (49.56%), Postives = 152/226 (67.26%), Query Frame = 0 Query: 1 MRITADVVLHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTIDLCDNEIKRLDNFPRMRRIKTLLLCNNNIARIGTALGEQIPELEALVLTNNKLASLSEIDHXXXXXXXXXXXXVDNPVARTSHYRPYILHKLPNLKILDFKKIKLDERKAANKLFKSDAGKQQLADIADEGKAIASEAASKAPEKRAMTDEERRLARAMIDSATTPEELELVQRQLRAGI 227 +++TA+V+ + + N +KERELDLRG KIP+IENLG T DQFDTID DN+I++LD FP +RRIK+LLL NN I RI LGE IP LE LVLTNN L L ++D + NPVA HYR Y+++KLP+L++LDF+K+KL ER+AA LFKS GK +IA + K +++EA +KAP + E R R + +A+T EE+E + + LRAG+ Sbjct: 2 VKLTAEVIHLSHQYTNAIKERELDLRGYKIPVIENLGATLDQFDTIDFSDNDIRKLDGFPLLRRIKSLLLNNNRILRIADGLGEVIPNLETLVLTNNHLQELGDLDPLAEFSKLTYLSLLSNPVANKQHYRSYVINKLPSLRVLDFRKVKLKEREAARDLFKSKKGKVLAKEIAQKSKFLSAEAGNKAPIGK--NTNEARAIREAVANASTLEEVERLNQMLRAGV 225
BLAST of NO06G01550 vs. NCBI_GenBank
Match: KZS12980.1 (U2 small nuclear ribonucleoprotein A' [Daphnia magna]) HSP 1 Score: 210.7 bits (535), Expect = 9.700e-51 Identity = 112/226 (49.56%), Postives = 153/226 (67.70%), Query Frame = 0 Query: 1 MRITADVVLHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTIDLCDNEIKRLDNFPRMRRIKTLLLCNNNIARIGTALGEQIPELEALVLTNNKLASLSEIDHXXXXXXXXXXXXVDNPVARTSHYRPYILHKLPNLKILDFKKIKLDERKAANKLFKSDAGKQQLADIADEGKAIASEAASKAPEKRAMTDEERRLARAMIDSATTPEELELVQRQLRAGI 227 +++TA+V+ + + N +KERELDLRG KIP+IENLG T DQFDTID DN+I++LD FP +RRIK+LLL NN I RI LGE IP LE LVLTNN + L ++D + NPVA HYR Y+++KLP+L++LDF+K+KL ER+AA LFKS GK +IA + K +++E +KAP A + EE R R + +A+T EE+E + + LRAG+ Sbjct: 2 VKLTAEVIHLSHQYTNAIKERELDLRGYKIPVIENLGATLDQFDTIDFSDNDIRKLDGFPLLRRIKSLLLNNNRILRIAEGLGEVIPNLETLVLTNNHIQELGDLDPLAEFSKLTYLSLLSNPVANKQHYRSYVINKLPSLRVLDFRKVKLKEREAARDLFKSKKGKVLAKEIAQKSKFLSAEMGNKAPIGGA-SAEEARAIREAVANASTLEEVERLNQMLRAGV 226
BLAST of NO06G01550 vs. NCBI_GenBank
Match: XP_018575812.1 (U2 small nuclear ribonucleoprotein A' [Anoplophora glabripennis]) HSP 1 Score: 198.0 bits (502), Expect = 6.500e-47 Identity = 105/240 (43.75%), Postives = 154/240 (64.17%), Query Frame = 0 Query: 1 MRITADVVLHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTIDLCDNEIKRLDNFPRMRRIKTLLLCNNNIARIGTALGEQIPELEALVLTNNKLASLSEIDHXXXXXXXXXXXXVDNPVARTSHYRPYILHKLPNLKILDFKKIKLDERKAANKLFKSDAGKQQLADIADEGKA-IASEAASKAPEKRAMTDEERRLARAMIDSATTPEELELVQRQLRAGIFKAPEPAVKQQEG 240 +++TA+++ ++ ++NPVK+RELDLRG +IP IENLG T DQFDT+D DN+I++LD FP ++R+K LLL NN I RIG L E IP LE+L+LT N++A L +ID + NPV HYR Y++++LP LK+LDF+KIKL ER A LFKS GK+ +I+ K + + + + ++DEE R R I+ A++ EE+E +Q+ L++G + KQQ G Sbjct: 2 VKLTAELIQNSMQYINPVKDRELDLRGYRIPEIENLGATGDQFDTVDFSDNDIRKLDGFPYLKRLKCLLLNNNRIVRIGEHLEEYIPNLESLILTGNQIADLGDIDPLVSLEKLTTLSLMHNPVTAKQHYRLYVIYRLPQLKLLDFRKIKLKERDEARTLFKSKKGKEMQKEISKRAKTFVPGGGINNIAKNKGLSDEEVRKIRDAINKASSLEEVERLQKILQSGQIPGNDINGKQQNG 241
BLAST of NO06G01550 vs. NCBI_GenBank
Match: XP_014237387.1 (probable U2 small nuclear ribonucleoprotein A' [Trichogramma pretiosum]) HSP 1 Score: 194.9 bits (494), Expect = 5.500e-46 Identity = 102/225 (45.33%), Postives = 146/225 (64.89%), Query Frame = 0 Query: 1 MRITADVVLHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTIDLCDNEIKRLDNFPRMRRIKTLLLCNNNIARIGTALGEQIPELEALVLTNNKLASLSEIDHXXXXXXXXXXXXVDNPVARTSHYRPYILHKLPNLKILDFKKIKLDERKAANKLFKSDAGKQQLADIADEGKAIASEAASKAPEKRAMTDEERRLARAMIDSATTPEELELVQRQLRAG 226 +++T +++ + ++NPV++RELDLRG KIP IENLG T DQFDT+D DN+I++LDNFP ++RIKTL NN I RI L IP LE L+LT N+L L +I + NPV+ +HYR YI+ K+PNLK+LDFKKIK+ ER+ N+ FKS GK+ DI + KAI+ S ++ M++EER + I +AT+ EE++ + + L+AG Sbjct: 2 VKLTPELIQQSMQYINPVRDRELDLRGYKIPAIENLGATLDQFDTLDFSDNDIRKLDNFPLLKRIKTLFFNNNRIVRIADGLENCIPNLETLMLTGNQLQELCDIQPLFGLKKLTTLCLLQNPVSAKAHYRQYIIFKMPNLKLLDFKKIKMKEREEVNEFFKSPRGKEIAKDITKKAKAISH--GSNNVDRPLMSNEERAKIKEAISNATSLEEVQRLSKLLQAG 224
BLAST of NO06G01550 vs. NCBI_GenBank
Match: XP_023219841.1 (U2 small nuclear ribonucleoprotein A'-like [Centruroides sculpturatus] >XP_023219842.1 U2 small nuclear ribonucleoprotein A'-like [Centruroides sculpturatus]) HSP 1 Score: 194.9 bits (494), Expect = 5.500e-46 Identity = 105/237 (44.30%), Postives = 147/237 (62.03%), Query Frame = 0 Query: 1 MRITADVVLHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTIDLCDNEIKRLDNFPRMRRIKTLLLCNNNIARIGTALGEQIPELEALVLTNNKLASLSEIDHXXXXXXXXXXXXVDNPVARTSHYRPYILHKLPNLKILDFKKIKLDERKAANKLFKSDAGKQQLADIADEGKAIASEA-----ASKAPEKRAMTDEERRLARAMIDSATTPEELELVQRQLRAGIFKAPEP 233 +++T D++L + ++NPV++RELDLRG KIP+IENLG T DQFDTIDL DN+I++LD FP +RR+K LLL NN I RIG L E +P LE+L+L+NN L L +ID + NP+ HYR YI+HK+P +++LDF+K+K ER AA++LFK GKQ +I + K A +K P + + A ID ATT EE+E + + L++G EP Sbjct: 2 VKLTPDLILQSAQYINPVRDRELDLRGYKIPVIENLGATLDQFDTIDLSDNDIRKLDGFPFLRRLKCLLLNNNRICRIGDNLQESLPSLESLILSNNHLQELGDIDTLASIKNLTYLSLMKNPITTKKHYRLYIIHKIPQVRVLDFRKVKKKERDAASQLFKGKKGKQLEKEIGKKSKIFVPGAPLPSGVAKQPSGGPAPSDVEAIKNA-IDKATTLEEVERLNQMLKSGQIPGKEP 237
BLAST of NO06G01550 vs. NCBI_GenBank
Match: XP_023327952.1 (U2 small nuclear ribonucleoprotein A'-like [Eurytemora affinis]) HSP 1 Score: 192.2 bits (487), Expect = 3.600e-45 Identity = 104/230 (45.22%), Postives = 143/230 (62.17%), Query Frame = 0 Query: 1 MRITADVVLHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTIDLCDNEIKRLDNFPRMRRIKTLLLCNNNIARIGTALGEQIPELEALVLTNNKLASLSEIDHXXXXXXXXXXXXVDNPVARTSHYRPYILHKLPNLKILDFKKIKLDERKAANKLFKSDAGKQQLADIADEGK-----AIASEAASKAPEKRAMTDEERRLARAMIDSATTPEELELVQRQLRAG 226 ++ T D++ A ++NP+++RELDLRG KIP+IENLG T DQFDTID DNEI++LD FP + R+KTLL+ NN I RI L +P LE L+LTNN + L++++ + NPV +YR Y++HK PNLK+LDFKKIK ER+ A LFKS GK QL DI + K A EA +KA + E+ + +A I A++ EE+E + + LR G Sbjct: 2 VKCTPDLIECAGQYINPIRDRELDLRGYKIPVIENLGSTLDQFDTIDFSDNEIRKLDGFPFLSRVKTLLMNNNRIVRISEGLELNLPHLETLILTNNSIQELADLEPLTTIKGLRMLSLLHNPVITRRNYRSYVIHKFPNLKVLDFKKIKEKERETAKLLFKSKEGKTQLKDIQQKAKTFVPGAALPEATNKATNPAGLNPEQVKNIKAAIAKASSLEEVERLNQMLRTG 231
BLAST of NO06G01550 vs. NCBI_GenBank
Match: OQR68589.1 (U2 small nuclear ribonucleoprotein A'-like [Tropilaelaps mercedesae]) HSP 1 Score: 191.8 bits (486), Expect = 4.700e-45 Identity = 106/230 (46.09%), Postives = 147/230 (63.91%), Query Frame = 0 Query: 1 MRITADVVLHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTIDLCDNEIKRLDNFPRMRRIKTLLLCNNNIARIGTALGEQIPELEALVLTNNKLASLSEIDHXXXXXXXXXXXXVDNPVARTSHYRPYILHKLPNLKILDFKKIKLDERKAANKLFKSDAGKQQLADIA-----DEGKAIASEAASKAPEKRAMTDEERRLARAMIDSATTPEELELVQRQLRAG 226 +R+T D+V +A ++NPVKERELDLRG +I IENLG T DQFDTID DN+I++L+ FP ++RIK+LLL NN I RI L E +P LE+LVLTNN++ +L ++D + NPVA HYR YI+HK+P L+ILDFK+IK+ ER A KLFK GK + +I ++ K +K AMT E+++ + I ATT +E+E + + LR+G Sbjct: 2 VRLTVDIVENAAQYINPVKERELDLRGYRISEIENLGATLDQFDTIDFSDNDIRKLEGFPFLKRIKSLLLNNNRICRIMENLEEHLPALESLVLTNNQIQNLGDLDPLATVKTLRHLSVLKNPVALKKHYRLYIVHKVPQLRILDFKRIKMAERDEARKLFKGKKGKALVKEIGLKSAPEKAKTFMPGEPAKLENTFAMTVEDQQAIKEAIGKATTLDEVERLTQMLRSG 231
BLAST of NO06G01550 vs. NCBI_GenBank
Match: XP_022659760.1 (U2 small nuclear ribonucleoprotein A'-like [Varroa destructor] >XP_022698550.1 U2 small nuclear ribonucleoprotein A'-like [Varroa jacobsoni]) HSP 1 Score: 191.8 bits (486), Expect = 4.700e-45 Identity = 102/230 (44.35%), Postives = 146/230 (63.48%), Query Frame = 0 Query: 1 MRITADVVLHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTIDLCDNEIKRLDNFPRMRRIKTLLLCNNNIARIGTALGEQIPELEALVLTNNKLASLSEIDHXXXXXXXXXXXXVDNPVARTSHYRPYILHKLPNLKILDFKKIKLDERKAANKLFKSDAGKQQLADIA-----DEGKAIASEAASKAPEKRAMTDEERRLARAMIDSATTPEELELVQRQLRAG 226 +R+T D+V A ++NPVKERELDLRG ++P IENLG T DQFDTID DN+I++L+ FP ++RIK+LL NN I RI L EQ+P LE+L++TNN++ +L ++D + NPVA HYR YI+HK+P L+ILDFK+IK+ ER A K+FK G+ +I ++ K +K AMT E+++ + I ATT +E+E + + LR+G Sbjct: 2 VRLTVDIVQGAAQYINPVKERELDLRGYRLPEIENLGATLDQFDTIDFSDNDIRKLEGFPFLKRIKSLLFNNNRICRITENLEEQLPSLESLIMTNNQIQNLGDLDSLATVKSLRYLSVLKNPVALKKHYRLYIVHKIPQLRILDFKRIKMTERDEARKMFKGKKGEAFAKEIGLKSAPEKAKTFVPGEPAKLENTFAMTPEDQQAIKEAIGKATTLDEIERLTQLLRSG 231
BLAST of NO06G01550 vs. NCBI_GenBank
Match: CBN75181.1 (U2 small nuclear ribonucleoprotein A [Ectocarpus siliculosus]) HSP 1 Score: 191.4 bits (485), Expect = 6.100e-45 Identity = 99/227 (43.61%), Postives = 147/227 (64.76%), Query Frame = 0 Query: 1 MRITADVVLHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTIDLCDNEIKRLDNFPRMRRIKTLLLCNNNIARIGTALGEQIPELEALVLTNNKLASLSEIDHXXXXXXXXXXXXVDNPVARTSHYRPYILHKLPNLKILDFKKIKLDERKAANKLFKSDAGKQQLADIADEG-KAIASEAASKAPEKRAMTDEERRLARAMIDSATTPEELELVQRQLRAGI 227 MR+TAD+++HARA +NP ERELDLRG KIP+IENLGVTQDQFD +D DNEIK+LDNFPR +R+ +LLLCNN++++I LG +P L L+E+ + N V +YR Y+++ +P+LK LDF+K+ + ER++A +L +S AG+ + D+A + KA + A E++ +TDE R + I ATT EE+E++ ++++AGI Sbjct: 1 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSXXXXXXXXXXXLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGI 227 The following BLAST results are available for this feature:
BLAST of NO06G01550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G01550 ID=NO06G01550|Name=NO06G01550|organism=Nannochloropsis oceanica|type=gene|length=1500bpback to top protein sequence of NO06G01550.1 >NO06G01550.1-protein ID=NO06G01550.1-protein|Name=NO06G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bpback to top Synonyms
Publications
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