NO06G01480, NO06G01480 (gene) Nannochloropsis oceanica

Overview
NameNO06G01480
Unique NameNO06G01480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2840
Alignment locationchr6:469202..472041 +

Link to JBrowse

Properties
Property NameValue
DescriptionRecombination activating protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:469202..472041 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
Homology
[Close]
BLAST of NO06G01480 vs. NCBI_GenBank
Match: EWM26177.1 (recombination activating protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 153.3 bits (386), Expect = 3.700e-33
Identity = 77/114 (67.54%), Postives = 86/114 (75.44%), Query Frame = 0 
Query:    7 GAVVRAAAPPSPFPLPLESLA-LLDPAGQQAFIDKFAELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHLSDNSFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGLR 120
            GA   AAA P P P  L++LA LLDP GQQ FI+K  ELV C MCK FL+DPVAVPCSHTFCR C+DDH+SDNS CPEC  P Y KD+R NRA+  VLDSF DI RAL +QGLR
Sbjct:   12 GAEKGAAASP-PLPCSLDTLARLLDPKGQQDFINKIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLR 124
[Close]
BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_017332696.1 (PREDICTED: nuclear factor 7, brain-like isoform X2 [Ictalurus punctatus])

HSP 1 Score: 76.3 bits (186), Expect = 5.700e-10
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 0 
Query:   42 AELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHLSDN---SFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGLR 120
            A+L++CP+C   L+DPV +PC H +CR+CI +H++ N   + CPEC  P  + D+R NR +  ++D+ KD  R  E Q LR
Sbjct:    3 AKLIRCPVCWNDLRDPVCLPCEHFYCRVCITEHMTRNAPDTRCPECRRPFTQNDIRVNRVLRNLVDAAKDHLR--EHQALR 81
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BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_017570039.1 (PREDICTED: zinc-binding protein A33-like [Pygocentrus nattereri])

HSP 1 Score: 74.3 bits (181), Expect = 2.200e-9
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 0 
Query:   45 VQCPMCKRFLQDPVAVPCSHTFCRICIDDHL---SDNSFCPECAIPAYRKDMRPNRAMNCVLDS 106
            +QCP+C   L+DPV +PC H++CR+C+  HL   +D S CPEC  P  R D+R NR +  ++D+
Sbjct:    9 IQCPVCLNTLRDPVCLPCEHSYCRVCLTRHLAVSADESTCPECRTPFSRADIRVNRTLRNIVDA 72
[Close]
BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_017332687.1 (PREDICTED: nuclear factor 7, brain-like isoform X1 [Ictalurus punctatus])

HSP 1 Score: 73.2 bits (178), Expect = 4.800e-9
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 0 
Query:   42 AELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHLSDN---SFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGLR 120
            ++ ++CP+C   L+DPV +PC H +CR+CI +H++ N   + CPEC  P  + D+R NR +  ++D+ KD  R  E Q LR
Sbjct:    6 SQQIRCPVCWNDLRDPVCLPCEHFYCRVCITEHMTRNAPDTRCPECRRPFTQNDIRVNRVLRNLVDAAKDHLR--EHQALR 84
[Close]
BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_020331382.1 (nuclear factor 7, brain-like [Oncorhynchus kisutch])

HSP 1 Score: 72.8 bits (177), Expect = 6.300e-9
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0 
Query:   42 AELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHL-----SDNSFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGL 119
            +E +QCP+C     DPV++PC HTFCR CI  HL        S CPEC  P  +KD+R +R    VL +  D+ R  EE GL
Sbjct:    6 SEQLQCPVCLCLFTDPVSLPCDHTFCRPCISAHLLQSSAKSQSRCPECRGPFSQKDLRAHR----VLTNMADVAREEEESGL 83
[Close]
BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_024272420.1 (nuclear factor 7, brain-like isoform X1 [Oncorhynchus tshawytscha] >XP_024260437.1 nuclear factor 7, brain-like isoform X1 [Oncorhynchus tshawytscha])

HSP 1 Score: 72.8 bits (177), Expect = 6.300e-9
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0 
Query:   42 AELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHL-----SDNSFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGL 119
            +E +QCP+C     DPV++PC HTFCR CI  HL        S CPEC  P  +KD+R +R    VL +  D+ R  EE GL
Sbjct:    6 SEQLQCPVCLCLFTDPVSLPCDHTFCRPCISAHLLQSSAKSQSRCPECRGPFSQKDLRAHR----VLTNMADVAREEEESGL 83
[Close]
BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_024272421.1 (nuclear factor 7, brain-like isoform X2 [Oncorhynchus tshawytscha] >XP_024260438.1 nuclear factor 7, brain-like isoform X2 [Oncorhynchus tshawytscha])

HSP 1 Score: 72.8 bits (177), Expect = 6.300e-9
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0 
Query:   42 AELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHL-----SDNSFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGL 119
            +E +QCP+C     DPV++PC HTFCR CI  HL        S CPEC  P  +KD+R +R    VL +  D+ R  EE GL
Sbjct:    6 SEQLQCPVCLCLFTDPVSLPCDHTFCRPCISAHLLQSSAKSQSRCPECRGPFSQKDLRAHR----VLTNMADVAREEEESGL 83
[Close]
BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_014039013.1 (PREDICTED: nuclear factor 7, brain-like [Salmo salar])

HSP 1 Score: 71.2 bits (173), Expect = 1.800e-8
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0 
Query:   42 AELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHL-----SDNSFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGL 119
            +E +QCP+C     DPV++PC+HTFCR CI  HL        S CPEC  P  +KD+R +R    VL +  D  R  EE GL
Sbjct:    6 SEQLQCPVCLCVFTDPVSLPCNHTFCRPCISAHLLRSSAKSQSRCPECRGPFSQKDLRAHR----VLTNMADAAREEEESGL 83
[Close]
BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_015195292.1 (PREDICTED: tripartite motif-containing protein 52-like isoform X1 [Lepisosteus oculatus])

HSP 1 Score: 70.1 bits (170), Expect = 4.100e-8
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 0 
Query:   43 ELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHLSDN---SFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQ 117
            E +QCP+C     DPV +PC HTFCR C++ +L+ +     CPEC  P  R+D R NR +  + D  +     + EQ
Sbjct:    7 EELQCPVCLGLFSDPVTLPCGHTFCRGCLESYLATDVPVHLCPECRAPIPRRDFRTNRVLRNMADRARQEEEKVSEQ 83
[Close]
BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_015195293.1 (PREDICTED: tripartite motif-containing protein 52-like isoform X2 [Lepisosteus oculatus])

HSP 1 Score: 70.1 bits (170), Expect = 4.100e-8
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 0 
Query:   43 ELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHLSDN---SFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQ 117
            E +QCP+C     DPV +PC HTFCR C++ +L+ +     CPEC  P  R+D R NR +  + D  +     + EQ
Sbjct:    7 EELQCPVCLGLFSDPVTLPCGHTFCRGCLESYLATDVPVHLCPECRAPIPRRDFRTNRVLRNMADRARQEEEKVSEQ 83
The following BLAST results are available for this feature:
BLAST of NO06G01480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26177.13.700e-3367.54recombination activating protein 1 [Nannochloropsi... [more]
XP_017332696.15.700e-1043.21PREDICTED: nuclear factor 7, brain-like isoform X2... [more]
XP_017570039.12.200e-945.31PREDICTED: zinc-binding protein A33-like [Pygocent... [more]
XP_017332687.14.800e-940.74PREDICTED: nuclear factor 7, brain-like isoform X1... [more]
XP_020331382.16.300e-945.12nuclear factor 7, brain-like [Oncorhynchus kisutch... [more]
XP_024272420.16.300e-945.12nuclear factor 7, brain-like isoform X1 [Oncorhync... [more]
XP_024272421.16.300e-945.12nuclear factor 7, brain-like isoform X2 [Oncorhync... [more]
XP_014039013.11.800e-845.12PREDICTED: nuclear factor 7, brain-like [Salmo sal... [more]
XP_015195292.14.100e-838.96PREDICTED: tripartite motif-containing protein 52-... [more]
XP_015195293.14.100e-838.96PREDICTED: tripartite motif-containing protein 52-... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000304NSK000304Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01480.1NO06G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100072g10gene4342Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01480.1NO06G01480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01480 ID=NO06G01480|Name=NO06G01480|organism=Nannochloropsis oceanica|type=gene|length=2840bp
ATGAACGAAGCTGTCTGCGGTGCCGTGGTGAGGGCGGCAGCCCCACCCTC
TCCTTTTCCCCTCCCTCTAGAGAGCCTGGCACTACTAGACCCCGCAGGGC
AACAAGCCTTTATCGACAAGTTTGCGGAGCTCGTACAGTGTCCCATGTGg
taagtcggtggcggccacgcttttcttcggcctcgttattcgtcgcggta
ctcatccctacctccgtttccctccccccactcctcagCAAGCGTTTCCT
CCAAGACCCCGTCGCCGTTCCTTGCAGCCACACCTTCTGCCGCATCTGCA
TCGACGACCACCTGAGCGATAATAGTTTCTGCCCTGAATGCGCGATACCA
GCCTATCGAAAAGACATGAGACCGAACCGAGCAATGAATTGTGTGTTGGA
TTCTTTCAAGGACATACGACGGGCCTTAGAGGAACAGGGGCTACGTCGTC
CTCCTCCTCCGCTAGTAGCTCATTCTTCCTCTGCTTCTTTGGCTAGGGGC
GGGGTTTTGTTGCCGGGTTCGCCTTCTGGGAGAAGTAGAGGCTTAGGAGA
AGGAGAAGGAGGAAAAGAAGGAGGGCGGGGGAGGATGCTAGGGGAAGAGT
CAGCAACGCATGAGACGCAGGATGATCCTTTTCCAGCTTTGTTGGAAGAG
GAGAATGGGAAGGAAAAGAAAGAGAAGAAGGTAGGAGGAGACGGAGGGAT
CAATGAGAACGAGGAGGAAAAGAAGTCAAGAGGTTCGTCGTTAGGCATGA
ATGAAGGCGGCAAGATTGTGCTAGAGGAGGGCGACGACGAGAAGAAGAAG
CAAGAGGGGGGGGAGAAGGAGGTGATTATTATGGGAGTTGGTTCTGCTGT
CGCTCATGAGGGAGGAAGGGAGGAAGGGGGGGAAGGGGAGGGTACGCCAC
TGGTAGACTTAACGGACACTTCACCCGAGAAATCGCACCGGCCGTCGTCT
TGGCCTGGCGTGAAGCAAGAAGGTAGGGGAGAAGGAGGTGGTGGAGGAGG
AGGGACATCCGGTGGTGGTAGCTTTTTCTCTAAGATCGTTGATAAGGCAG
GGCAGTGGTTGGGTCGTGGACGTGCCAAGACCAGCAGCAGCAGCAACATC
TATAGACATAGCGGAGTAGAGACACCGAAAGGTTCCTTCTCAGCGTCTGC
TGCTGCTGCTACTGCGGCTTCCACCTCCGCCTCTTCCTCCTTTCCCGACG
ACGACATGGCGGCAGCAACTCAGACACGCATCACCCAGTATATAAATCCA
CGCCAACAGCTACCGCTACAGCAGCAGGACCAGCATCAGCGACAAAAGCA
ACTGGATCGGCAACAGCAACAGCAGAATCACAAGCGGAAAGAATGGGGAA
GAGGAGGAGGACAAGGAGAAAGAGTGGGAGGAGGGGGTTGTAGCAGCGCC
TGGAAGCACCCTCGACCCACTCCTCCTCCTTTACAGCTATCATCAACAGG
ATCTGTAGCAGCAGGTCCAGGAGGAGGAAGGGAACACGGAGCAGCAGTTC
AGTGTGTTCACATCGATGAAGATGAGATGGTCAAGGAGTTGACTTTAGGA
GGTCGGCCCCTCCCTACCAATGCTGCTGCTTGTATATATGCTGCTGCTCC
CCCTTCACGCCCTTTTCCCCCTCCACCACCACCACCACCCTCGTCCTCGC
CTCTCAGACAGCGACAACTTCAATGGCAGCAACTAAAACAGCAGCAGCAG
CGGTCGGGATCCACGCCGCACTCTCCCATTTTACTGTCTCCAGGGAAAGA
TGAAGAGGAGGGAAAGGGTGAAAAATGGAGGAGGGAGGAAGGGATTGAGG
TGGAAAACGATGACGATGACGAGACAAGAGCGACTGCCTCACCCGGGGAT
GGTGCTGCAGCAGCTAGCGCTCCAGCAATGCCGTGTCTCCCAACCTTGTC
AAAGAAAAGGGAGACTACCGACGTGTCCACCTATGCGAAAGATGAACATG
AGGAAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGCAGGACGT
CGTCAGTTACAGCATTTCCACCCTGTTGCTGCTGCCTCTCTTTCTCCTCC
CTCTCCCCCCCTTCAATCTCAGCTCCCCTCCCTCTATGGCTACCCTCCTA
CTCCCTTAATAAGCGCCCACAAATTTCCTTCCCAAGCCTTATCTTACATG
TCCGAGGATCTTTTAGCTGATGCCTGCTATCAGCACGAATGCAAGGACGA
GGAAGGGAGGGAAGGAGAGGATGAATCGCAGACCCACCGTCATCATGGTC
ATTGTTGGAGCAGCCCTGAGGAGGAATCGATGCCGATGCCACCACCACCA
CGCCTATCATCGCCTGCTCCTACTACTACAGCTGCCACTGCTACTTCTTC
TGCTGCTGCTCTTGATGCTGTTGCTGCTCTTGCTGCTATGCCACCCCCCT
TGCCCCGCGCTCCCTCCATCCATCAAGGGCGTTCTGACGAGTCCATTTCT
AGCTTACATATTCGACAGCGCTCCTCCCCCTCCCCTCTCTCCCCCACTTC
CTCCTCATCGAGTCAGAGCTCTGCAGAGACCTCCTCTCGCCTGTCCTCCC
CTCTCAATGTTGGAAGAAGAAGAGGAAAGGAGGGAGGAAGTGGAGGAAGA
ATCATCCCGGAGTCACAACAGCCATTTGTCTCCGGCAGCCAGAGCAGTCC
TGCAGGTCTGGTCATTCTGTCTACTCCACCCGATCAGCAGCAGCAGCAGC
AGCAGCAAGAACAGCAAAAGCAGAAGCATATAAAGAAGGTGGTTTATGAG
ACGCAAGAACCAGGAGCGCTGGGCTTCAGCTTGGGAGAAGGAGGAGACGA
AGAAGGAGGAGGATTTGAGGGAGGGGGGGGGGCCTCGTGA
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protein sequence of NO06G01480.1

>NO06G01480.1-protein ID=NO06G01480.1-protein|Name=NO06G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=917bp
MNEAVCGAVVRAAAPPSPFPLPLESLALLDPAGQQAFIDKFAELVQCPMC
KRFLQDPVAVPCSHTFCRICIDDHLSDNSFCPECAIPAYRKDMRPNRAMN
CVLDSFKDIRRALEEQGLRRPPPPLVAHSSSASLARGGVLLPGSPSGRSR
GLGEGEGGKEGGRGRMLGEESATHETQDDPFPALLEEENGKEKKEKKVGG
DGGINENEEEKKSRGSSLGMNEGGKIVLEEGDDEKKKQEGGEKEVIIMGV
GSAVAHEGGREEGGEGEGTPLVDLTDTSPEKSHRPSSWPGVKQEGRGEGG
GGGGGTSGGGSFFSKIVDKAGQWLGRGRAKTSSSSNIYRHSGVETPKGSF
SASAAAATAASTSASSSFPDDDMAAATQTRITQYINPRQQLPLQQQDQHQ
RQKQLDRQQQQQNHKRKEWGRGGGQGERVGGGGCSSAWKHPRPTPPPLQL
SSTGSVAAGPGGGREHGAAVQCVHIDEDEMVKELTLGGRPLPTNAAACIY
AAAPPSRPFPPPPPPPPSSSPLRQRQLQWQQLKQQQQRSGSTPHSPILLS
PGKDEEEGKGEKWRREEGIEVENDDDDETRATASPGDGAAAASAPAMPCL
PTLSKKRETTDVSTYAKDEHEEAAAAAAAAAAAAAGRRQLQHFHPVAAAS
LSPPSPPLQSQLPSLYGYPPTPLISAHKFPSQALSYMSEDLLADACYQHE
CKDEEGREGEDESQTHRHHGHCWSSPEEESMPMPPPPRLSSPAPTTTAAT
ATSSAAALDAVAALAAMPPPLPRAPSIHQGRSDESISSLHIRQRSSPSPL
SPTSSSSSQSSAETSSRLSSPLNVGRRRGKEGGSGGRIIPESQQPFVSGS
QSSPAGLVILSTPPDQQQQQQQQEQQKQKHIKKVVYETQEPGALGFSLGE
GGDEEGGGFEGGGGAS*
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Synonyms
Publications