NO06G01220, NO06G01220 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO06G01220 vs. NCBI_GenBank
Match: EWM26164.1 (hypothetical protein Naga_100121g1 [Nannochloropsis gaditana]) HSP 1 Score: 208.4 bits (529), Expect = 2.000e-50 Identity = 100/139 (71.94%), Postives = 114/139 (82.01%), Query Frame = 0 Query: 55 SNPKSTSTPITPSTSPFAPHE--LLEGDVVEYRITEAQRSKGQLPPGDTRLLGLGVINQFMHIHPLCRRSPESEELFYDEDQDALEEDVPGLVIRVLSHVWYQQRCVEDRKINPHGEEAEDMYIVEEGLSDGCGPAERY 192 SN +TS P P +P E LLEGDVVEYRITE QR KGQLP DTR LG+GV+NQFM IHPLCRRSP S ELF+DE+QDALEE+V +V+RV++ VWYQQRC+EDRKINPHGEEAEDMYI+EEGLS GCGPAER+ Sbjct: 73 SNVPTTSAPPATDFPPSSPVELHLLEGDVVEYRITEEQRRKGQLPALDTRTLGIGVVNQFMRIHPLCRRSPGSPELFFDEEQDALEENVNDIVVRVINQVWYQQRCIEDRKINPHGEEAEDMYILEEGLSPGCGPAERF 211
BLAST of NO06G01220 vs. NCBI_GenBank
Match: XP_024357765.1 (uncharacterized protein LOC112273342 [Physcomitrella patens] >PNR33074.1 hypothetical protein PHYPA_025017 [Physcomitrella patens]) HSP 1 Score: 71.6 bits (174), Expect = 3.000e-9 Identity = 46/127 (36.22%), Postives = 62/127 (48.82%), Query Frame = 0 Query: 75 ELLEGDVVEYRITEAQRSKGQLPPGDTRLLGLGVINQFM----------HIHPLCRRSPESEELFYDEDQDALEEDVPGLVIRVLSHV-----WYQQRCVEDRKINPHGEEAEDMYIVEEGLSDGCG 187 E++EGDVVEY + E RS G R GLG +++ + HI PL P DE Q+ +V+ LS V W R ++DR NPHGE AE +++VEE +SDG G Sbjct: 99 EVMEGDVVEYPLPEYVRSSGLY---GARSHGLGAVSEIVADDSSSATLCHIEPLVMVEPPEPSWVVDERQE--------MVVVHLSEVRRLEAWLSMRMIDDRISNPHGEHAEYLWLVEEPISDGTG 214
BLAST of NO06G01220 vs. NCBI_GenBank
Match: CEL95612.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 66.2 bits (160), Expect = 1.300e-7 Identity = 50/119 (42.02%), Postives = 61/119 (51.26%), Query Frame = 0 Query: 72 APHELLEGDVVEYRITEAQRSKGQLPPGDTRLLGLGVINQFMHIHPLCRR-SPESEELFYDEDQDAL---EEDVPGLVIRVLSHVWYQQRCV--EDRKINPHGEEAEDMYIVEEGLSDG 185 AP L EGDVVEY + R+LGLGV+ I PLCRR ++ E F + L E + V RVLS V+ QR + NPHGEEAED Y++EE LSDG Sbjct: 62 APPLLGEGDVVEYWCGD----------DGERVLGLGVVTASGVILPLCRREGNDAGEFFVVYEATPLPLREGEGEARVHRVLSEVFCSQRQIGGGSGPGNPHGEEAEDCYLIEEPLSDG 170
BLAST of NO06G01220 vs. NCBI_GenBank
Match: CBJ26994.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 65.9 bits (159), Expect = 1.600e-7 Identity = 46/121 (38.02%), Postives = 61/121 (50.41%), Query Frame = 0 Query: 76 LLEGDVVEYRITEAQRSKGQLPPGDTRLLGLGVINQFMHIHPLCRRSPESEELFYDEDQDALEEDVPG---LVIRVLSHVWYQQRCVEDRKINPHGEEAEDMYIVEEGLSDGCGPAERYRV 194 LLE DVVEYR S +L +G G + PL R+ LF+ D++A + G ++RVL V++ QR VEDR NPHGEEAED +++E G PA RV Sbjct: 53 LLELDVVEYRSGPDDESSLEL----ASYIGEG------KLQPLLTRTESGPNLFF-HDEEAQPVSLSGGSCRIVRVLDEVYFSQRIVEDRVKNPHGEEAEDCFLLE-----GIDPATVIRV 157
BLAST of NO06G01220 vs. NCBI_GenBank
Match: OAE35356.1 (hypothetical protein AXG93_3546s1140 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 64.3 bits (155), Expect = 4.800e-7 Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = 0 Query: 76 LLEGDVVEYRITEAQRSKGQLPPGDTRLLG----LGVI--------NQFMHIHPLCRRSPESEELFYDEDQDALEEDVPGLVIRVLSHVWYQQRCVEDRKINPHGEEAEDMYIVE 179 L+EGDVVEY LPP D G LGV+ + + PLC+ P S E + ED+D + VP ++++ W+ QR V DR NPHGE A ++++++ Sbjct: 43 LIEGDVVEY----------VLPPEDGNAEGKQKNLGVVVSISASGPSTLCEVQPLCQEVPGSNE--WLEDEDKSPDCVPLHRLQLVEEAWFSQRMVSDRVSNPHGEHAHNIWLID 145
BLAST of NO06G01220 vs. NCBI_GenBank
Match: PTQ49986.1 (hypothetical protein MARPO_0001s0054 [Marchantia polymorpha]) HSP 1 Score: 64.3 bits (155), Expect = 4.800e-7 Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = 0 Query: 76 LLEGDVVEYRITEAQRSKGQLPPGDTRLLG----LGVI--------NQFMHIHPLCRRSPESEELFYDEDQDALEEDVPGLVIRVLSHVWYQQRCVEDRKINPHGEEAEDMYIVE 179 L+EGDVVEY LPP D G LGV+ + + PLC+ P S E + ED+D + VP ++++ W+ QR V DR NPHGE A ++++++ Sbjct: 88 LIEGDVVEY----------VLPPEDGNAEGKQKNLGVVVSISASGPSTLCEVQPLCQEVPGSNE--WLEDEDKSPDCVPLHRLQLVEEAWFSQRMVSDRVSNPHGEHAHNIWLID 190 The following BLAST results are available for this feature:
BLAST of NO06G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G01220 ID=NO06G01220|Name=NO06G01220|organism=Nannochloropsis oceanica|type=gene|length=799bpback to top protein sequence of NO06G01220.1 >NO06G01220.1-protein ID=NO06G01220.1-protein|Name=NO06G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bpback to top Synonyms
Publications
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