NO06G01220, NO06G01220 (gene) Nannochloropsis oceanica

Overview
NameNO06G01220
Unique NameNO06G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length799
Alignment locationchr6:390871..391669 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:390871..391669 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO06G01220 vs. NCBI_GenBank
Match: EWM26164.1 (hypothetical protein Naga_100121g1 [Nannochloropsis gaditana])

HSP 1 Score: 208.4 bits (529), Expect = 2.000e-50
Identity = 100/139 (71.94%), Postives = 114/139 (82.01%), Query Frame = 0
Query:   55 SNPKSTSTPITPSTSPFAPHE--LLEGDVVEYRITEAQRSKGQLPPGDTRLLGLGVINQFMHIHPLCRRSPESEELFYDEDQDALEEDVPGLVIRVLSHVWYQQRCVEDRKINPHGEEAEDMYIVEEGLSDGCGPAERY 192
            SN  +TS P      P +P E  LLEGDVVEYRITE QR KGQLP  DTR LG+GV+NQFM IHPLCRRSP S ELF+DE+QDALEE+V  +V+RV++ VWYQQRC+EDRKINPHGEEAEDMYI+EEGLS GCGPAER+
Sbjct:   73 SNVPTTSAPPATDFPPSSPVELHLLEGDVVEYRITEEQRRKGQLPALDTRTLGIGVVNQFMRIHPLCRRSPGSPELFFDEEQDALEENVNDIVVRVINQVWYQQRCIEDRKINPHGEEAEDMYILEEGLSPGCGPAERF 211          
BLAST of NO06G01220 vs. NCBI_GenBank
Match: XP_024357765.1 (uncharacterized protein LOC112273342 [Physcomitrella patens] >PNR33074.1 hypothetical protein PHYPA_025017 [Physcomitrella patens])

HSP 1 Score: 71.6 bits (174), Expect = 3.000e-9
Identity = 46/127 (36.22%), Postives = 62/127 (48.82%), Query Frame = 0
Query:   75 ELLEGDVVEYRITEAQRSKGQLPPGDTRLLGLGVINQFM----------HIHPLCRRSPESEELFYDEDQDALEEDVPGLVIRVLSHV-----WYQQRCVEDRKINPHGEEAEDMYIVEEGLSDGCG 187
            E++EGDVVEY + E  RS G       R  GLG +++ +          HI PL    P       DE Q+        +V+  LS V     W   R ++DR  NPHGE AE +++VEE +SDG G
Sbjct:   99 EVMEGDVVEYPLPEYVRSSGLY---GARSHGLGAVSEIVADDSSSATLCHIEPLVMVEPPEPSWVVDERQE--------MVVVHLSEVRRLEAWLSMRMIDDRISNPHGEHAEYLWLVEEPISDGTG 214          
BLAST of NO06G01220 vs. NCBI_GenBank
Match: CEL95612.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-7
Identity = 50/119 (42.02%), Postives = 61/119 (51.26%), Query Frame = 0
Query:   72 APHELLEGDVVEYRITEAQRSKGQLPPGDTRLLGLGVINQFMHIHPLCRR-SPESEELFYDEDQDAL---EEDVPGLVIRVLSHVWYQQRCV--EDRKINPHGEEAEDMYIVEEGLSDG 185
            AP  L EGDVVEY   +             R+LGLGV+     I PLCRR   ++ E F   +   L   E +    V RVLS V+  QR +       NPHGEEAED Y++EE LSDG
Sbjct:   62 APPLLGEGDVVEYWCGD----------DGERVLGLGVVTASGVILPLCRREGNDAGEFFVVYEATPLPLREGEGEARVHRVLSEVFCSQRQIGGGSGPGNPHGEEAEDCYLIEEPLSDG 170          
BLAST of NO06G01220 vs. NCBI_GenBank
Match: CBJ26994.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.9 bits (159), Expect = 1.600e-7
Identity = 46/121 (38.02%), Postives = 61/121 (50.41%), Query Frame = 0
Query:   76 LLEGDVVEYRITEAQRSKGQLPPGDTRLLGLGVINQFMHIHPLCRRSPESEELFYDEDQDALEEDVPG---LVIRVLSHVWYQQRCVEDRKINPHGEEAEDMYIVEEGLSDGCGPAERYRV 194
            LLE DVVEYR      S  +L       +G G       + PL  R+     LF+  D++A    + G    ++RVL  V++ QR VEDR  NPHGEEAED +++E     G  PA   RV
Sbjct:   53 LLELDVVEYRSGPDDESSLEL----ASYIGEG------KLQPLLTRTESGPNLFF-HDEEAQPVSLSGGSCRIVRVLDEVYFSQRIVEDRVKNPHGEEAEDCFLLE-----GIDPATVIRV 157          
BLAST of NO06G01220 vs. NCBI_GenBank
Match: OAE35356.1 (hypothetical protein AXG93_3546s1140 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 64.3 bits (155), Expect = 4.800e-7
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = 0
Query:   76 LLEGDVVEYRITEAQRSKGQLPPGDTRLLG----LGVI--------NQFMHIHPLCRRSPESEELFYDEDQDALEEDVPGLVIRVLSHVWYQQRCVEDRKINPHGEEAEDMYIVE 179
            L+EGDVVEY           LPP D    G    LGV+        +    + PLC+  P S E  + ED+D   + VP   ++++   W+ QR V DR  NPHGE A ++++++
Sbjct:   43 LIEGDVVEY----------VLPPEDGNAEGKQKNLGVVVSISASGPSTLCEVQPLCQEVPGSNE--WLEDEDKSPDCVPLHRLQLVEEAWFSQRMVSDRVSNPHGEHAHNIWLID 145          
BLAST of NO06G01220 vs. NCBI_GenBank
Match: PTQ49986.1 (hypothetical protein MARPO_0001s0054 [Marchantia polymorpha])

HSP 1 Score: 64.3 bits (155), Expect = 4.800e-7
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = 0
Query:   76 LLEGDVVEYRITEAQRSKGQLPPGDTRLLG----LGVI--------NQFMHIHPLCRRSPESEELFYDEDQDALEEDVPGLVIRVLSHVWYQQRCVEDRKINPHGEEAEDMYIVE 179
            L+EGDVVEY           LPP D    G    LGV+        +    + PLC+  P S E  + ED+D   + VP   ++++   W+ QR V DR  NPHGE A ++++++
Sbjct:   88 LIEGDVVEY----------VLPPEDGNAEGKQKNLGVVVSISASGPSTLCEVQPLCQEVPGSNE--WLEDEDKSPDCVPLHRLQLVEEAWFSQRMVSDRVSNPHGEHAHNIWLID 190          
The following BLAST results are available for this feature:
BLAST of NO06G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM26164.12.000e-5071.94hypothetical protein Naga_100121g1 [Nannochloropsi... [more]
XP_024357765.13.000e-936.22uncharacterized protein LOC112273342 [Physcomitrel... [more]
CEL95612.11.300e-742.02unnamed protein product [Vitrella brassicaformis C... [more]
CBJ26994.11.600e-738.02expressed unknown protein [Ectocarpus siliculosus][more]
OAE35356.14.800e-733.91hypothetical protein AXG93_3546s1140 [Marchantia p... [more]
PTQ49986.14.800e-733.91hypothetical protein MARPO_0001s0054 [Marchantia p... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL089nonsL089Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR098ncniR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR145ngnoR145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000314NSK000314Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01220.1NO06G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613546gene_10669Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100121g1gene4351Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01220.1NO06G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01220 ID=NO06G01220|Name=NO06G01220|organism=Nannochloropsis oceanica|type=gene|length=799bp
ACAGGCACATGAGGGCAGAGAAGCTTCCAGCGCTGCTGGTGCTGCTGCTG
AGCTTGGTTGGCTCGAGCACGAGgtaagaaccgaaaagccaagttaatac
gataatccatttcgacattcatacacgacctgcacgtcactcgcaccccc
ccagTTGGCATCAGCGCTTCTCCCATAGACCTTCGACAACGCGACACATA
CCAGAGAGGTCACGTGTCTCAGCATTTTCTCCTCTGTGGGGGACGACACC
CTCAAACCCCAAAAGCACATCTACACCCATCACTCCCTCAACCTCGCCCT
TCGCACCTCACGAGCTCCTCGAAGGCGACGTCGTCGAGTACCGGATTACC
GAGGCTCAGCGCAGCAAAGGACAGTTGCCACCCGGAGATACACGGTTGCT
TGGTTTGGGCGTCATTAATCAGTTCATGCACATTCACCCGCTGTGTCGAC
GGAGCCCGGAGTCCGAAGAACTCTTCTACGACGAGGACCAAGACGCATTA
GAAGAAGACGTGCCAGGCCTTGTTATACGGGTGCTTAGTCATGTGTGGTA
TCAGCAGCGATGCGTTGAAGATCGAAAAATCAATCCGCATGGGGAAGAGG
CTGAGGATATGTACATTGTGGAGGAGGGATTGAGTGACGGGTGTGGGCCC
GCGGAGCGGTACCGTGTGGTTTAAGGAGAAAGGAGGGATGGGGAGAATGT
GAGGCAAATGTTTTAGTATTTGCTTAGCAGGTCTATGTGTGAATTAATAG
GAGTCAAAAATAAGTAAATACTTGCATAAATCGGATAGGGGGGGTTCAA
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protein sequence of NO06G01220.1

>NO06G01220.1-protein ID=NO06G01220.1-protein|Name=NO06G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MRAEKLPALLVLLLSLVGSSTSWHQRFSHRPSTTRHIPERSRVSAFSPLW
GTTPSNPKSTSTPITPSTSPFAPHELLEGDVVEYRITEAQRSKGQLPPGD
TRLLGLGVINQFMHIHPLCRRSPESEELFYDEDQDALEEDVPGLVIRVLS
HVWYQQRCVEDRKINPHGEEAEDMYIVEEGLSDGCGPAERYRVV*
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Synonyms
Publications