NO06G01170, NO06G01170 (gene) Nannochloropsis oceanica

Overview
NameNO06G01170
Unique NameNO06G01170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1973
Alignment locationchr6:368891..370863 +

Link to JBrowse

Properties
Property NameValue
DescriptionCupin 4 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:368891..370863 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003347JmjC_dom
Homology
BLAST of NO06G01170 vs. NCBI_GenBank
Match: EWM26085.1 (cupin 4 family protein [Nannochloropsis gaditana])

HSP 1 Score: 434.9 bits (1117), Expect = 2.800e-118
Identity = 229/414 (55.31%), Postives = 281/414 (67.87%), Query Frame = 0
Query:    4 SRLIEHRPHSGRDKQAGQEE---DEKDSEWSVRQGPFDEEDFEDDPEGGE-RTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHVDNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSWVLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAA-IXXXXXXXXXXXXQTFYSDQSLALPRDAGEITPNALSQLKEMVKKGMASVLDDEYVLARWMGKHLTRPRQTRXXXXXXXXXXXXXXXXXXXXXXYLVEIDREEAETIVQELM---------ERGKGEGEKKEQWGVVYRAEGLKFAHALENSLLFVDGHVWELKDEDGERRWRVCACLTGGPSPLPADELKELLNSSPECSEIVREWLERGFLYVLGE 404
            SRLIEH   + R+K   +EE    ++ + WSVRQGPFDEEDF+ + + GE RTWTVLVQEVDRHVPEV DLLQSFRFLPNWR+DDIMISYAPQAGGIGPHVDNYDVFLLQ  GTR+WSIQN+L+    E  SL+P++P+RVL ++ E H+W L PGD+LYLPPRVPH+GVSLD+DCMTYSIGFRAPTQ ELL AA                FY D  L   +D GEITP AL Q++ +V+  +A+VLDD+ +LARW G+ LT P+                         + V ++REEA  +VQEL+         E+G  +     +   +YRAEGLKFAHA    LLFVDGHVW+L+DED ERR R+C CLTGG SP P  ++  +L  S EC ++V EWL RGFLYV+ E
Sbjct:  412 SRLIEH--WALRNKVEAEEEGCHGDEGATWSVRQGPFDEEDFQGEGDEGEGRTWTVLVQEVDRHVPEVGDLLQSFRFLPNWRVDDIMISYAPQAGGIGPHVDNYDVFLLQGRGTRKWSIQNALMDRETEARSLIPHNPLRVLASFRETHAWTLEPGDLLYLPPRVPHDGVSLDQDCMTYSIGFRAPTQEELLEAATAAAVSTLREREAGPRFYVDPHLPYAQDVGEITPVALKQVRGLVQDALAAVLDDDALLARWAGRSLTGPKH------------RSRAVAAEEGEEFGVWMEREEARAVVQELLGWESSREIEEKGATQASMPRK---LYRAEGLKFAHADGGRLLFVDGHVWDLRDEDEERRRRICNCLTGGASPFPLQDISSVLRESLECVDVVTEWLMRGFLYVVEE 808          
BLAST of NO06G01170 vs. NCBI_GenBank
Match: WP_068126421.1 (cupin domain-containing protein [Rhodothermaceae bacterium RA] >ARA94214.1 cupin [Rhodothermaceae bacterium RA])

HSP 1 Score: 239.2 bits (609), Expect = 2.300e-59
Identity = 119/238 (50.00%), Postives = 155/238 (65.13%), Query Frame = 0
Query:   27 DSEWSVRQGPFDEEDFEDDPEGGERTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHVDNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSWVLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAAIXXXXXXXXXXXXQTFYSDQSLALPRDAGEITPNALSQLKEMVKKGMASVLDDEYVLARWMGKHLTRPRQ 265
            D  W +  GPF  EDFE  P   E  W++LVQEVDR+VPEVA LL+ FRF+PNWR+DD+MISYAP+ GG+GPHVDNYDVFLLQ  G RRW I ++ +    E   L+P+  VR+L  +E D  WVL PGD+LYLPPR+PHNG++ D DCMTYSIGFRAP+  ELL   +               Y+D  L  P + G I+P AL++++ M+      V  DE  + RW G+ +T P++
Sbjct:   65 DYPWQLHYGPFSPEDFEALP---ETHWSLLVQEVDRYVPEVAALLEHFRFVPNWRIDDVMISYAPKHGGVGPHVDNYDVFLLQGLGHRRWQIHHTPV----EEEHLVPDLDVRILADFEPDAEWVLAPGDLLYLPPRIPHNGIAED-DCMTYSIGFRAPSTVELLEGFLSHVIEHANPGRR---YADPDLRPPAEPGAISPEALARIRSMI----TEVFQDEQTIDRWFGRFMTEPKR 287          
BLAST of NO06G01170 vs. NCBI_GenBank
Match: WP_076716827.1 (cupin domain-containing protein [Motiliproteus sp. MSK22-1] >OMH38010.1 cupin [Motiliproteus sp. MSK22-1])

HSP 1 Score: 231.9 bits (590), Expect = 3.600e-57
Identity = 128/324 (39.51%), Postives = 179/324 (55.25%), Query Frame = 0
Query:   23 EDEKDSEWSVRQGPFDEEDFEDDPEGGERTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHVDNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSWVLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAAIXXXXXXXXXXXXQTFYSDQSLALPRDAGEITPNALSQLKEMVKKGMASVLDDEYVLARWMGKHLTRPRQTRXXXXXXXXXXXXXXXXXXXXXXYLVEIDREEAETIVQELMERGKGEGEKKEQWGVVYRAEGLKFAHALENSL--LFVDGH 345
            E  +  +W ++ GPF+E  F + P+     WT+LVQ VD  VPE ADL++ FRF+P+WRLDD+M+SYA   GG+GPH DNYDVFLLQ+ G RRW I        D+ S  LP  PVR+L  W+ + SWVL PGDMLYLPPRV HNGV++  DC+TYS+G+RAP   ++L   +               YSD  L+L   +GEI  + L +++ M ++     ++D   LARW G+ +T P+                            E   E++   V+EL         K +  G++ R EG++FA++L   L  LFV GH
Sbjct:   62 ETPETGDWQLKHGPFEESLFSELPQD---HWTLLVQGVDHWVPEAADLVEQFRFIPSWRLDDLMVSYAAPGGGVGPHYDNYDVFLLQAAGQRRWEIG----GLYDQDSEFLPGKPVRILSQWQPEQSWVLNPGDMLYLPPRVGHNGVAVSDDCVTYSVGYRAPQNGDML---MHFANFCGWQLKDTDRYSDPDLSLRNSSGEICNSDLQRVQSMFRE----FVEDRENLARWFGRFVTEPKYPENQQ----------------------EATPEDSGDPVEEL---------KMQPDGILRRGEGIRFAYSLSGGLLQLFVHGH 340          
BLAST of NO06G01170 vs. NCBI_GenBank
Match: CBJ28975.1 (cupin superfamily protein [Ectocarpus siliculosus])

HSP 1 Score: 230.7 bits (587), Expect = 8.100e-57
Identity = 109/245 (44.49%), Postives = 156/245 (63.67%), Query Frame = 0
Query:   20 GQEEDEKDSEWSVRQGPFDEEDFEDDPEGGERTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHVDNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSWVLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAAIXXXXXXXXXXXXQTFYSDQSLALPRDAGEITPNALSQLKEMVKKGMASVLDDEYVLARWMGKHLTRPRQ 265
            G+  D    +W V  GPF+E+ F +    GE  WT+LV EV+RHVPEV+DLL  F+F+P+WR+DD+M+SYAP+ G +GPH+DNYDVFLLQ  G R WSI++S  S  +E   L+ +  +RVL  +++   WVL PGD LYLPPR+ H GVS D++CMTYS+GFRAP+  +L+  +               F+ D +L      G I+  A+S+ K +V++ + + LDD+    RW G  +TR R+
Sbjct:   32 GRYVDNAGKDWEVEHGPFEEKMFSN---LGETHWTLLVNEVNRHVPEVSDLLMKFQFIPSWRVDDVMVSYAPKGGSVGPHLDNYDVFLLQGAGKRLWSIEDSFTSGEEEEERLVKDIDIRVLAEFKKSEGWVLEPGDALYLPPRLAHYGVSQDEECMTYSVGFRAPSVRDLV--SFFGEHVGSTATKPDDFFQDPNLKRQESHGLISREAVSKAKGLVREALLAALDDDVAFDRWFGAQVTRSRR 271          
BLAST of NO06G01170 vs. NCBI_GenBank
Match: WP_027859825.1 (cupin domain-containing protein [Marinobacterium jannaschii])

HSP 1 Score: 230.3 bits (586), Expect = 1.100e-56
Identity = 127/340 (37.35%), Postives = 184/340 (54.12%), Query Frame = 0
Query:   29 EWSVRQGPFDEEDFEDDPEGGERTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHVDNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSWVLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAAIXXXXXXXXXXXXQTFYSDQSLALPRDAGEITPNALSQLKEMVKKGMASVLDDEYVLARWMGKHLTRPRQTRXXXXXXXXXXXXXXXXXXXXXXYLVEIDREEAETIVQELMERGKGEGEKKEQWGVVYRAEGLKFAH---ALENSLLFVDGHVWELKDEDGERRWRVCACLTG 366
            EW ++ GPF EE F D P+     WT+LVQ VD  VP+ ++L++ FRF PNWR+DD+MISYA   GG+GPH DNYDVFL+Q+ G RRW +        DE S    N+PV +L  W+E+ SWVL PGDMLYLPPRV HNGV++   CMTYS+GFRAP+  E+L   +            +  Y D  L +  + GEI+P A++Q++ + ++     L ++  L+ W G+++T P+                            EI  E+    +QE++E G           ++ R EG +F++   A +  +LF DG+ +E +          CA  TG
Sbjct:   66 EWKLKHGPFSEESFSDLPDS---HWTLLVQAVDHWVPQASELIEQFRFAPNWRIDDLMISYAADGGGVGPHYDNYDVFLIQAEGQRRWEVGGIF----DEFSPRRENTPVMILTEWKEEQSWVLNPGDMLYLPPRVGHNGVAVGDGCMTYSVGFRAPSHEEILRGLV---EELSGKLKNEDRYQDPDLEIQSNPGEISPKAIAQIRSITEE----YLCNDSFLSDWFGRYMTEPKYPDLEQVPED------------------EISLEQ----IQEVLEEGD---------LLLTRNEGSRFSYYQLADDKVILFADGNSFECEG-------ATCALATG 353          
BLAST of NO06G01170 vs. NCBI_GenBank
Match: WP_091359165.1 (cupin domain-containing protein [Amphritea atlantica] >SEQ77156.1 50S ribosomal protein L16 3-hydroxylase [Amphritea atlantica])

HSP 1 Score: 229.6 bits (584), Expect = 1.800e-56
Identity = 104/236 (44.07%), Postives = 154/236 (65.25%), Query Frame = 0
Query:   28 SEWSVRQGPFDEEDFEDDPEGGERTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHVDNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSWVLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAAIXXXXXXXXXXXXQTFYSDQSLALPRDAGEITPNALSQLKEMVKKGMASVLDDEYVLARWMGKHLTRPR 264
            S+W ++ GPFD++ F + P+     WT+LVQ VD  VPE +++++ FRF+PNWR DD+M+S+A Q GG+GPH DNYDVFL+Q+ G RRW +        D+ S   P++PV ++  WE +++WVL PGDMLY+PP+V HNG+    DCMTYS+GFRAP+ AE++ +              ++ Y+D  LAL  + GEI P AL +++E+      S L+D+  L  W+GK +T P+
Sbjct:   63 SDWQIQHGPFDDDTFSNLPDS---HWTLLVQAVDHWVPEASEIVEQFRFIPNWRYDDLMVSFASQGGGVGPHYDNYDVFLIQTQGKRRWEVGGFF----DQNSPRRPDTPVMIMTEWEPEYNWVLEPGDMLYIPPQVGHNGIGESDDCMTYSVGFRAPSHAEIMRS---FTDFIGEKLTSESRYTDPDLALQDNPGEIRPEALQKVREI----FTSYLEDDARLGEWLGKFVTDPK 284          
BLAST of NO06G01170 vs. NCBI_GenBank
Match: WP_012842559.1 (cupin domain-containing protein [Rhodothermus marinus] >ACY46947.1 Cupin 4 family protein [Rhodothermus marinus DSM 4252])

HSP 1 Score: 227.6 bits (579), Expect = 6.900e-56
Identity = 118/235 (50.21%), Postives = 152/235 (64.68%), Query Frame = 0
Query:   30 WSVRQGPFDEEDFEDDPEGGERTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHVDNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSWVLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAAIXXXXXXXXXXXXQTFYSDQSLALPRDAGEITPNALSQLKEMVKKGMASVLDDEYVLARWMGKHLTRPRQ 265
            W VR GPF+ EDF   P      WT+LVQEVDR VPEVA LL++ RF+PNWRLDDIM+SYAP+ G +G H+DNYDVFL+Q+ G RRW I +  +    E   L+P   VR+L  +E D  W+L PGD+LYLPPR+PH GV+L+ DCMT+SIGFRAP QAEL  A                 Y+D  L    + GEITP AL Q++ +++    +++DD   LARW G  +T PR+
Sbjct:   67 WEVRYGPFEPEDFVALP---PTHWTLLVQEVDRLVPEVAALLETVRFVPNWRLDDIMVSYAPEGGTVGAHIDNYDVFLVQAWGRRRWQINHRPV----EREELVPGLEVRLLAHFEPDAEWILEPGDVLYLPPRIPHYGVALE-DCMTFSIGFRAPDQAELAEAMPRMAAWLDGGRR----YADPDLTPADEPGEITPEALDQIQALLR----ALIDDRERLARWFGCIITEPRR 285          
BLAST of NO06G01170 vs. NCBI_GenBank
Match: WP_014065779.1 (cupin domain-containing protein [Rhodothermus marinus] >AEN71991.1 Cupin 4 family protein [Rhodothermus marinus SG0.5JP17-172])

HSP 1 Score: 227.6 bits (579), Expect = 6.900e-56
Identity = 118/235 (50.21%), Postives = 152/235 (64.68%), Query Frame = 0
Query:   30 WSVRQGPFDEEDFEDDPEGGERTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHVDNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSWVLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAAIXXXXXXXXXXXXQTFYSDQSLALPRDAGEITPNALSQLKEMVKKGMASVLDDEYVLARWMGKHLTRPRQ 265
            W VR GPF+ EDF   P      WT+LVQEVDR VPEVA LL++ RF+PNWRLDDIM+SYAP+ G +G H+DNYDVFL+Q+ G RRW I +  +    E   L+P   VR+L  +E D  W+L PGD+LYLPPR+PH GV+L+ DCMT+SIGFRAP QAEL  A                 Y+D  L    + GEITP AL Q++ ++++    ++DD   LARW G  +T PR+
Sbjct:   67 WKVRYGPFEPEDFVALP---PTHWTLLVQEVDRLVPEVAALLETVRFIPNWRLDDIMVSYAPEGGTVGAHIDNYDVFLVQAWGRRRWQINHRPV----EREELVPGLEVRLLAHFEPDAEWILEPGDVLYLPPRIPHYGVALE-DCMTFSIGFRAPDQAELAEAMPRMAAWLDGGRR----YADPDLTPADEPGEITPEALDQIQALLRE----LIDDRARLARWFGCIITEPRR 285          
BLAST of NO06G01170 vs. NCBI_GenBank
Match: 4CSW_A (Chain A, Rhodothermus marinus YCFD-like ribosomal protein L16 Arginyl hydroxylase >4CSW_B Chain B, Rhodothermus marinus YCFD-like ribosomal protein L16 Arginyl hydroxylase >4CUG_A Chain A, Rhodothermus marinus YCFD-like ribosomal protein L16 Arginyl hydroxylase in complex substrate fragment >4CUG_B Chain B, Rhodothermus marinus YCFD-like ribosomal protein L16 Arginyl hydroxylase in complex substrate fragment)

HSP 1 Score: 227.6 bits (579), Expect = 6.900e-56
Identity = 118/235 (50.21%), Postives = 152/235 (64.68%), Query Frame = 0
Query:   30 WSVRQGPFDEEDFEDDPEGGERTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHVDNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSWVLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAAIXXXXXXXXXXXXQTFYSDQSLALPRDAGEITPNALSQLKEMVKKGMASVLDDEYVLARWMGKHLTRPRQ 265
            W VR GPF+ EDF   P      WT+LVQEVDR VPEVA LL++ RF+PNWRLDDIM+SYAP+ G +G H+DNYDVFL+Q+ G RRW I +  +    E   L+P   VR+L  +E D  W+L PGD+LYLPPR+PH GV+L+ DCMT+SIGFRAP QAEL  A                 Y+D  L    + GEITP AL Q++ +++    +++DD   LARW G  +T PR+
Sbjct:   81 WEVRYGPFEPEDFVALP---PTHWTLLVQEVDRLVPEVAALLETVRFVPNWRLDDIMVSYAPEGGTVGAHIDNYDVFLVQAWGRRRWQINHRPV----EREELVPGLEVRLLAHFEPDAEWILEPGDVLYLPPRIPHYGVALE-DCMTFSIGFRAPDQAELAEAMPRMAAWLDGGRR----YADPDLTPADEPGEITPEALDQIQALLR----ALIDDRERLARWFGCIITEPRR 299          
BLAST of NO06G01170 vs. NCBI_GenBank
Match: WP_026078808.1 (cupin domain-containing protein [Pseudomonas nitroreducens])

HSP 1 Score: 227.3 bits (578), Expect = 9.000e-56
Identity = 116/240 (48.33%), Postives = 155/240 (64.58%), Query Frame = 0
Query:   27 DSEWSVRQGPFDEEDFEDDPEGGERTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHVDNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSWVLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAAIXXXXXXXXXXXXQTFYSDQSLALPR---DAGEITPNALSQLKEMVKKGMASVLDDEYVLARWMGKHLTRPR 264
            DS W +R+GPF E+ F   P   ER WT+LVQ VD+ +PEVADLL+ F+FLP+WR+DD+MISYA   GG+GPH DNYDVFLLQ HG RRW +  +     D  S +LP++ +R+L  +EE   WVL PGDMLYLPPRV H G++ D DCMTYS+GFRAP+ AE+L                +  YSD  +A  +   D  +I  +AL +LK ++++ M+    DE +L  W G+ +T PR
Sbjct:   65 DSPWELRRGPFQEDTFSQMP---ERDWTLLVQAVDQFIPEVADLLEHFKFLPSWRIDDVMISYAAPGGGVGPHFDNYDVFLLQGHGRRRWKVGQT----CDASSPMLPHADLRILAEFEECADWVLEPGDMLYLPPRVAHYGIAED-DCMTYSVGFRAPSAAEVL---THFTDFLAQFLSDEERYSDAGMAAMKGDSDQHQIQRDALDRLKNLLQEHMS----DERLLLTWFGQFMTEPR 289          
The following BLAST results are available for this feature:
BLAST of NO06G01170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26085.12.800e-11855.31cupin 4 family protein [Nannochloropsis gaditana][more]
WP_068126421.12.300e-5950.00cupin domain-containing protein [Rhodothermaceae b... [more]
WP_076716827.13.600e-5739.51cupin domain-containing protein [Motiliproteus sp.... [more]
CBJ28975.18.100e-5744.49cupin superfamily protein [Ectocarpus siliculosus][more]
WP_027859825.11.100e-5637.35cupin domain-containing protein [Marinobacterium j... [more]
WP_091359165.11.800e-5644.07cupin domain-containing protein [Amphritea atlanti... [more]
WP_012842559.16.900e-5650.21cupin domain-containing protein [Rhodothermus mari... [more]
WP_014065779.16.900e-5650.21cupin domain-containing protein [Rhodothermus mari... [more]
4CSW_A6.900e-5650.21Chain A, Rhodothermus marinus YCFD-like ribosomal ... [more]
WP_026078808.19.000e-5648.33cupin domain-containing protein [Pseudomonas nitro... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR098ncniR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000331NSK000331Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01170.1NO06G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534259gene_10681Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01170.1NO06G01170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01170 ID=NO06G01170|Name=NO06G01170|organism=Nannochloropsis oceanica|type=gene|length=1973bp
CAGGCGTACTCTTGGGGATCGCTCTTCTCCACCCTAGCATCTTCTCCAAC
GTTACACCCAGCTACCACCATCATGCCACCGGGCCACATACCCCTCCTTT
GCGTGGCCTCGACAGTCGCAATGATGCTGCTACTACAAACCTCGCATGCC
TTCCTGGCCCTCCCAGTATTGTCACACGTCTCCAGTACAAGAAATATGCC
CAACCACAAACGCCAGCATTGCGCATCCTCCTCGTCCTTTTCTCATGACG
CCAAAACTATTCACTTGCCCGCCCCCCTGCGGAGTGGACAGGGGGGCTGC
CACAAAACAAGCACGTCTTATTCTTGCGTGAATTTTGGCAACAAAAGCCG
CTATTGATTCGACAGGCTTTTGATCCAGCTGTGGCGGTGGTGGGACCGAA
TGAGCTGCTATCGTTGGCATGCGATGACATGGTGACGTCGCGCTTGATCG
AGCACCGGCCACACAGCGGAAGAGACAAACAGGCTGGACAGGAGGAAGAT
GAAAAAGACAGTGAATGGAGTGTGCGGCAAGGACCTTTTGACGAGGAGGA
TTTTGAAGACGACCCGGAGGGGGGGGAGAGGACGTGGACGGTGTTGGTAC
AGGAGGTGGATAGGCATGTGCCTGAAGTGGCGGACTTGCTGCAATCCTTC
AGGTTTCTCCCAAACTGGCGGTTGGATGACATgtacgttcacgagaatta
aatgactgcgatttattgcctaaaatttcgaaattcattgcgagctcact
ttgacaatccgcgctcaccaattccattcctttcttcccttctccgcctc
ccctccccgccactcacgcccacataacacacagCATGATAAGTTATGCA
CCCCAGGCAGGCGGGATCGGCCCACATGTCGACAATTACGATGTTTTCCT
CCTCCAAAGCCATGGCACCCGTCGCTGGTCCATCCAAAACTCCCTTCTGT
CCGCCGCGGACGAACTCTCCTCCCTCCTTCCTAACAGCCCTGTCCGGGTT
CTGGGCACCTGGGAGGAGGACCACTCATGGGTGTTACGACCTGGGGACAT
GCTGTACCTTCCCCCCCGGGTTCCTCACAATGGCGTTAGTCTCGACAAAG
ACTGCATGACCTACTCGATTGGTTTTCGGGCGCCCACCCAGGCGGAGCTA
CTACATGCAGCGATCACTGCTGCTGCTGCTGCTGCTGCTGCGGCATCCGG
GCAAACTTTTTACAGCGATCAGTCTCTTGCCTTGCCGAGAGATGCGGGTG
AGATCACTCCCAACGCATTGAGTCAGTTAAAAGAGATGGTAAAAAAAGGT
ATGGCCTCTGTACTGGATGATGAGTATGTTTTAGCAAGATGGATGGGGAA
ACACCTGACGAGACCCAGGCAAACAAGGAGACAAAGAGTAAGGGAGGAGG
AGGAAGAAGGAAACGGGGAAGACGGGGAGGAGGGGGGAGGGGGATATCTA
GTAGAGATAGACAGGGAAGAAGCGGAGACGATTGTGCAGGAGTTGATGGA
AAGAGGGAAGGGGGAAGGAGAGAAGAAGGAGCAGTGGGGGGTCGTCTATC
GCGCGGAGGGTTTAAAATTTGCCCATGCATTGGAGAATAGTCTCTTGTTT
GTGGACGGACATGTGTGGGAGTTGAAGGACGAAGACGGGGAACGACGGTG
GAGGGTGTGTGCGTGCTTGACTGGAGGGCCGTCACCTTTGCCAGCGGATG
AATTGAAGGAGCTCCTTAATTCGAGCCCTGAGTGTTCTGAGATCGTGAGG
GAGTGGTTGGAACGAGGGTTCTTGTATGTTCTGGGTGAAGAAACAGTGGT
GGTGGAGGAGGAATGAATTTATTGAAAAAATTGAAAAAGTATACAAATGA
ATGAGAGCCCAAAAAATCGAGTTTTGATCATCCGAAATCATTTTACGTAC
TGTCATTGTTAAAAGTAGAATTAAACGGGGGGAAAAAAAAGAAGCAAATG
TTTGATGACGTCCGCTGAAGAGA
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protein sequence of NO06G01170.1

>NO06G01170.1-protein ID=NO06G01170.1-protein|Name=NO06G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MVTSRLIEHRPHSGRDKQAGQEEDEKDSEWSVRQGPFDEEDFEDDPEGGE
RTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHV
DNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSW
VLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAAITAAAA
AAAAASGQTFYSDQSLALPRDAGEITPNALSQLKEMVKKGMASVLDDEYV
LARWMGKHLTRPRQTRRQRVREEEEEGNGEDGEEGGGGYLVEIDREEAET
IVQELMERGKGEGEKKEQWGVVYRAEGLKFAHALENSLLFVDGHVWELKD
EDGERRWRVCACLTGGPSPLPADELKELLNSSPECSEIVREWLERGFLYV
LGEETVVVEEE*
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