NO06G01160, NO06G01160 (gene) Nannochloropsis oceanica

Overview
NameNO06G01160
Unique NameNO06G01160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1890
Alignment locationchr6:366509..368398 +

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Properties
Property NameValue
DescriptionMesencephalic astrocyte-derived neurotrophic factor homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:366509..368398 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036361SAP_dom_sf
IPR019345Armet_prot
Homology
BLAST of NO06G01160 vs. NCBI_GenBank
Match: EWM26085.1 (cupin 4 family protein [Nannochloropsis gaditana])

HSP 1 Score: 277.3 bits (708), Expect = 3.100e-71
Identity = 138/166 (83.13%), Postives = 149/166 (89.76%), Query Frame = 0
Query:    1 MRAHLSLLLLALVAAFIGLATVTSAADPKDCEVCIGVLEKIDAGLDAKAKKNKLAIEEAIETYCTRKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCERLKKKSAEICTIKYPVKVDSQTDYSKLRVKELKAILSERGVECTGCLEKPDFIKKCEETAHLSA 167
            MRAHLSL ++A +            +DPKDCEVCIGVLEKIDAG++AKAKKNKLA+E+AIE YC+RKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVC RLKKKSAEIC IKYPVKVDSQTDY+KLRVKELKAIL+ERGVECTGCLEKPDFIKKCEETAHLSA
Sbjct:   25 MRAHLSLGVVAALXXXXXXXXXXXXSDPKDCEVCIGVLEKIDAGMEAKAKKNKLAVEDAIEAYCSRKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCARLKKKSAEICGIKYPVKVDSQTDYTKLRVKELKAILAERGVECTGCLEKPDFIKKCEETAHLSA 190          
BLAST of NO06G01160 vs. NCBI_GenBank
Match: GAX94618.1 (Hypothetical protein PINS_002510 [Pythium insidiosum])

HSP 1 Score: 161.8 bits (408), Expect = 1.900e-36
Identity = 78/163 (47.85%), Postives = 111/163 (68.10%), Query Frame = 0
Query:   10 LALVAAFIGLATVTSAADPKDCEVCIGVLEKIDAG----LDAKAKKNKLAIEEAIETYCTRKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCERLKKKSAEICTIKYPVKVDSQTDYSKLRVKELKAILSERGVECTGCLEKPDFIKKCEETAHLSAEL 169
            L  +AA + +A  T+ AD K+CEVC+ V++ +        + K KK     E A+E YC  K +  K+ KLCYFL+P+K+DV++  S G    K+ + L+KK+ + C+++YPVK D+ TDY K+RVKELK IL+ERGVEC GC+EKPDFIKK +ET HL ++L
Sbjct:  382 LLAIAALVVVAANTAYADSKECEVCVKVVDDVKGVYAKLAEQKGKKTLAVAENAVEKYCGSKKLAAKDNKLCYFLEPLKKDVARQVSFGKDSMKIXKSLEKKNPDFCSMRYPVKTDANTDYRKMRVKELKKILTERGVECVGCVEKPDFIKKIKETEHLHSDL 544          
BLAST of NO06G01160 vs. NCBI_GenBank
Match: GAX11254.1 (RNA-binding protein 15 [Fistulifera solaris])

HSP 1 Score: 159.1 bits (401), Expect = 1.200e-35
Identity = 74/148 (50.00%), Postives = 105/148 (70.95%), Query Frame = 0
Query:   24 SAADPKDCEVCIGVLEKIDAGLDAKAKKNKLAIEEAIETYCTRK--DIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCERLKKKSAEICTIKYPVKVDS--QTDYSKLRVKELKAILSERGVECTGCLEKPDFIKKCEETAHLSAE 168
            S     +CEVC+ V++++ A +  +  K K  IE AI  YC  K   + ++EKK+CY++ PIKRDV+QPFS GMP  KVCER+ K + EIC++K PVK D+  + D SKLRVK+LK IL++RGVEC GC+EK +F+K+ +ET HL+ +
Sbjct:   16 SVVSAGECEVCVKVMDEVRASMSKEDSKKKPEIEAAIGKYCANKGNKLSSREKKICYYIDPIKRDVAQPFSLGMPSLKVCERINKSNPEICSVKLPVKTDNMEKQDISKLRVKQLKQILADRGVECVGCVEKEEFVKRVQETEHLAED 163          
BLAST of NO06G01160 vs. NCBI_GenBank
Match: GAX13426.1 (RNA-binding protein 15 [Fistulifera solaris])

HSP 1 Score: 158.7 bits (400), Expect = 1.600e-35
Identity = 74/153 (48.37%), Postives = 107/153 (69.93%), Query Frame = 0
Query:   19 LATVTSAADPKDCEVCIGVLEKIDAGLDAKAKKNKLAIEEAIETYCTRK--DIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCERLKKKSAEICTIKYPVKVDS--QTDYSKLRVKELKAILSERGVECTGCLEKPDFIKKCEETAHLSAE 168
            L   T+     +CEVC+ V++++ A +  +  K K  IE AI  YC  K   + ++EKK+CY++ PIKRDV+QPFS GMP  KVCER+ K + EIC++K PVK ++  + D SKLRVK+LK IL++RGVEC GC+EK +F+K+ +ET HL+ +
Sbjct:   11 LCLATNVVSAGECEVCVKVMDEVRASMSKEDSKKKPEIEAAIGKYCANKGNKLSSREKKICYYIDPIKRDVAQPFSLGMPSLKVCERINKSNPEICSVKLPVKTENMEKQDISKLRVKQLKQILADRGVECVGCVEKEEFVKRVQETEHLAED 163          
BLAST of NO06G01160 vs. NCBI_GenBank
Match: OEU16618.1 (hypothetical protein FRACYDRAFT_275419, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 156.8 bits (395), Expect = 6.100e-35
Identity = 81/152 (53.29%), Postives = 105/152 (69.08%), Query Frame = 0
Query:   19 LATVTSAA-DPKDCEVCIGVLEKIDAGLDAKAKKNKLAIEEAIETYCTRKD--IDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCERLKKKSAEICTIKYPVKVDSQ--TDYSKLRVKELKAILSERGVECTGCLEKPDFIKKCEETAHLS 166
            LAT   AA DPK+CEVCI V+++I A +     K K  IE A+ TYC  KD  +  +EKK+CY++ PIKRD++QPFS GM   K+C+R+ K + EIC++KYPVK D     D SKLRVK+LK IL ERGV+  G LEK +F+KK E T HL+
Sbjct:   11 LATAALAAEDPKECEVCIKVMDEIRATMTKADTKKKPMIENAMNTYCENKDEKLTAREKKICYYIDPIKRDIAQPFSLGMSSLKLCKRITKSNPEICSVKYPVKTDKMETKDLSKLRVKQLKKILDERGVDYKGLLEKDEFVKKVEATEHLA 162          
BLAST of NO06G01160 vs. NCBI_GenBank
Match: XP_002288151.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93587.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 156.4 bits (394), Expect = 8.000e-35
Identity = 78/167 (46.71%), Postives = 123/167 (73.65%), Query Frame = 0
Query:    1 MRAHLSLLLLALVAAFIGLATVTSAADPKDCEVCIGVLEKIDAGLDAKAKKNKLAIEEAIETYCTRKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCERLKKKSAEICTIKYPVKVDS--QTDYSKLRVKELKAILSERGVECTGCLEKPDFIKKCEETAHLS 166
            MRA +S+L  AL+AA    ++V +A+DP++CEVC+ V++ +   +  + +K+K  IE+AI  +C +  +  +E+K+CY++ PIKRDV+QPFS GM   KVC+R+ K + EIC++K+PVK ++  + D +KLRVK+LK+IL +RGVEC GC+EK +FI + +ET HL+
Sbjct:    1 MRA-ISILSAALLAA----SSVNAASDPRECEVCMKVMQDVRDAMPKEDQKDKPKIEQAIGAHCKKDTLSARERKICYYIDPIKRDVAQPFSLGMTVEKVCKRIDKTNPEICSVKFPVKTENLEKKDLTKLRVKQLKSILLDRGVECKGCVEKEEFIARVQETEHLA 162          
BLAST of NO06G01160 vs. NCBI_GenBank
Match: XP_002176890.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51353.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 155.6 bits (392), Expect = 1.400e-34
Identity = 76/164 (46.34%), Postives = 112/164 (68.29%), Query Frame = 0
Query:    6 SLLLLALVAAFIGLATVTSAADPKDCEVCIGVLEKIDAGLDAKAKKNKLAIEEAIETYCTRKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCERLKKKSAEICTIKYPVKVDSQ--TDYSKLRVKELKAILSERGVECTGCLEKPDFIKKCEETAHLSAE 168
            S+ LL++VA    LAT+T      DCEVC+ V+E + A +       K AIE A+  YC R  +  +E+K+CY++ PIKRDV+QPFS GM   K C+R+ + + EICT+K+PVK +     D +KLRVK+LK IL++RGVEC GC+EK +F+K+ +ET H++++
Sbjct:   97 SMKLLSIVAL---LATLTIGWAANDCEVCVKVMEDVRATIPKADASKKPAIEAALGAYCARDTLSARERKICYYIDPIKRDVAQPFSLGMTALKTCQRINQSNPEICTVKFPVKTEKMETKDINKLRVKQLKQILADRGVECKGCVEKEEFVKRVQETEHMASD 257          
BLAST of NO06G01160 vs. NCBI_GenBank
Match: XP_009035089.1 (hypothetical protein AURANDRAFT_59975, partial [Aureococcus anophagefferens] >EGB10276.1 hypothetical protein AURANDRAFT_59975, partial [Aureococcus anophagefferens])

HSP 1 Score: 155.2 bits (391), Expect = 1.800e-34
Identity = 76/156 (48.72%), Postives = 106/156 (67.95%), Query Frame = 0
Query:   27 DPKDCEVCIGVLEKIDAGLDAKAKKNKLAIEEAIETYC-------TRKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCERLKKKSAEICTIKYPVKVDSQ-------TDYSKLRVKELKAILSERGVECTGCLEKPDFIKKCEETAHLSAEL 169
            DPK+CEVCI  LE IDA +D   K +K +I E I  +C          +++++++K+CY+ +PI+  ++QPFST MPK +VC+RLKK +AEIC +KYPV+VD             K+RVKELK IL++RGV+C GCLEK DFIK+  ET H+S +L
Sbjct:    3 DPKECEVCIANLEAIDALIDKDEKTSKQSIMEGITKHCGDLQNEAPNPNLNSRDRKMCYYFEPIRAAIAQPFSTRMPKDRVCKRLKKDNAEICEVKYPVQVDENISPEEFLAKLKKMRVKELKGILNDRGVKCEGCLEKDDFIKRIVETKHMSTDL 158          
BLAST of NO06G01160 vs. NCBI_GenBank
Match: XP_008608283.1 (hypothetical protein SDRG_04386 [Saprolegnia diclina VS20] >EQC38691.1 hypothetical protein SDRG_04386 [Saprolegnia diclina VS20])

HSP 1 Score: 152.9 bits (385), Expect = 8.800e-34
Identity = 80/159 (50.31%), Postives = 109/159 (68.55%), Query Frame = 0
Query:    8 LLLALVAAFIGLATVTSAADPKDCEVCIGVLEKIDAG----LDAKAKKNKLAI-EEAIETYCTRKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCERLKKKSAEICTIKYPVKVDSQTDYSKLRVKELKAILSERGVECTGCLEKPDFIKKCEET 162
            L   +V A +GL+ VTSAAD K+CEVCI V+E + +     L  K  KNKLA+ E+A+E   ++K  D KEKKL YFL+P+K+D ++  + G    K+C+ L KK+ E C+I++P+K    TDYSK+RVKELK IL ERG  C GC+EK DFIK+ +ET
Sbjct:    3 LFHVVVLALLGLSAVTSAADDKECEVCIKVIEDLKSTYSTMLAEKGGKNKLAVAEQALEKLVSKKKADPKEKKLFYFLEPMKKDAARQVTFGKETLKICQGLSKKNPEFCSIRFPIKAAKGTDYSKMRVKELKKILQERGENCNGCVEKSDFIKRLQET 161          
BLAST of NO06G01160 vs. NCBI_GenBank
Match: XP_012201555.1 (hypothetical protein SPRG_07379 [Saprolegnia parasitica CBS 223.65] >KDO27780.1 hypothetical protein SPRG_07379 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 150.6 bits (379), Expect = 4.400e-33
Identity = 80/159 (50.31%), Postives = 107/159 (67.30%), Query Frame = 0
Query:    8 LLLALVAAFIGLATVTSAADPKDCEVCIGVLEKIDAG----LDAKAKKNKLAI-EEAIETYCTRKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCERLKKKSAEICTIKYPVKVDSQTDYSKLRVKELKAILSERGVECTGCLEKPDFIKKCEET 162
            L   +V A +GL+ V SAAD K+CEVCI V+E + +     L  K  KNKLA+ E+A+E   ++K  D KEKKL YFL+P+K+D ++  + G    K+C+ L KK+ E C+I+YP+K    TDYSK+RVKELK IL ERG  C GC EK DFIK+ +ET
Sbjct:    3 LFHVVVLALLGLSGVASAADDKECEVCIKVIEDLKSTYSTMLADKGGKNKLAVAEQALEKLVSKKKADPKEKKLFYFLEPMKKDAARQVTFGKETLKICQGLSKKNPEFCSIRYPIKAAKGTDYSKMRVKELKKILQERGENCNGCAEKSDFIKRLQET 161          
The following BLAST results are available for this feature:
BLAST of NO06G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26085.13.100e-7183.13cupin 4 family protein [Nannochloropsis gaditana][more]
GAX94618.11.900e-3647.85Hypothetical protein PINS_002510 [Pythium insidios... [more]
GAX11254.11.200e-3550.00RNA-binding protein 15 [Fistulifera solaris][more]
GAX13426.11.600e-3548.37RNA-binding protein 15 [Fistulifera solaris][more]
OEU16618.16.100e-3553.29hypothetical protein FRACYDRAFT_275419, partial [F... [more]
XP_002288151.18.000e-3546.71predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002176890.11.400e-3446.34predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_009035089.11.800e-3448.72hypothetical protein AURANDRAFT_59975, partial [Au... [more]
XP_008608283.18.800e-3450.31hypothetical protein SDRG_04386 [Saprolegnia dicli... [more]
XP_012201555.14.400e-3350.31hypothetical protein SPRG_07379 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR098ncniR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000332NSK000332Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01160.1NO06G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613572gene_10682Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100014g7gene4372Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01160.1NO06G01160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01160 ID=NO06G01160|Name=NO06G01160|organism=Nannochloropsis oceanica|type=gene|length=1890bp
GGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGA
AGAGCTGCTGCTGGGGAAAAAACGCCTGCGCCGACGGCAAGAGAAGAGCC
AGAAGCATGACCAGGACAGAGGCGTGGAGTAAAAACGGTAGTCTTACGGA
CGCCATGGCTGCTGTGTTAGGTATATGTGGTGGTGGATCTTGAGAGACTG
GGGCTTGGGCTCCCAGTACAGCGTAGGGTGGAGGTGATCTTGGCTGTTGA
CGGGGGCAACTCGCCACGAGACGCGTGTTTTGTTGTGGTTTGCTTGGTTT
GATATGAATTATGAGTACGCAAGGCCCAGTCGCCTTGATAAGACAATTCG
CAAGCTCTCTTTCTTCTTGCTTGGGTGCAACAACTCGAAAGTTGTGGTAC
GGTTTGTGCGGCAGGGCAAGCAGTGGCCGAGCCGATGCAGAAACATCAGT
GCCATTATTCACTCACTCGCTCAAACGACGCCACGAATCATATCGAAGAA
ACAAAATGCAGACGGCTGTCTCCACATTAATGCCCCCCCTTTCCCACGCA
CACCATCACGAAGCCTTAGTACAATGGGCGATCAGCCCATGAGTTTCTGA
CTTGATTTGTCGATATCCCCCAACACCACACCACACGTAACAGACACAGC
GAAGGCCCTTCCCACACGCGAGGCCTCATCATCATGCGCGCCCATCTCTC
CCTCCTCCTCCTGGCCCTTGTGGCAGCCTTCATCGGCCTGGCTACCGTCA
CGTCTGCGGCCGACCCCAAGGACTGCGAAGgtaaggagacgtgtgaaata
gctgatccaatgcatggttggtattcttggaggatcaaggacctgttggg
cgtttttgaaatcaggagcgtgcgcttccctacttccagaaaagtggcgg
ggaagaggagtcctgttacattttacatcgacacacaaaccaccagtcga
atcattcagaggcattttcttgtcgtcgggaaagaggctttgacaacact
tgctcccacccagcttttcacactttttcaccagcagccctctgatcgtg
taccaaggagagcgatcatttcccccagaccctcatatacacgacacttt
cccctacctctattaggcattgcgaattgagggttttgaccaagagttta
actgtcaccaccatccgctttcttgccctaaacccctctctcccccctct
ccctccatgcccatagTCTGTATCGGCGTGCTCGAGAAAATCGATGCGGG
CCTCGACGCCAAGGCCAAGAAGAACAAGCTCGCCATCGAGGAAGCCATTG
AGACCTACTGCACCCGCAAAGACATCGACAACAAGGAGAAGAAACTCTGT
TATTTCCTCAAGCCCATCAAGAGGGATGTGTCTCAGCCGTTTTCGACGGG
CATGCCCAAGGCCAAGGTCTGCGAGCGGCTCAAAAAGAAGAGTGCCGAGA
TCTGCACGATCAAGTATCgtaagtactcaaagagagggaaggagacagga
agggtcagcatattgttatggatgcttgtagagctaacaaaaaataatga
tgcctccctccctccctccctccctccctcccctctccccctcccccttc
agCCGTCAAGGTAGACAGCCAGACGGACTACAGCAAGCTTCGTGTCAAGG
AGCTGAAGGCTATCCTATCTGAGCGAGGGGTAGAGTGCACGGGGTGTCTG
GAAAAGCCAGACTTCATTAAGAAGTGTGAGGAGACTGCGCATTTGTCTGC
TGAGCTCTAAAGAAAGAGGAAAGGACGGGAGGAAAGGGCGTAGGGAGGGA
GATAAAGCAACAATGCTGTGTGGAGAGTGCCAGAGCGATGGTAAGGCGCT
GCATGTCTCCTTCAAAGAGTTGCGATTTTGTTAGGGAGGG
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protein sequence of NO06G01160.1

>NO06G01160.1-protein ID=NO06G01160.1-protein|Name=NO06G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MRAHLSLLLLALVAAFIGLATVTSAADPKDCEVCIGVLEKIDAGLDAKAK
KNKLAIEEAIETYCTRKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKV
CERLKKKSAEICTIKYPVKVDSQTDYSKLRVKELKAILSERGVECTGCLE
KPDFIKKCEETAHLSAEL*
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Synonyms
Publications