NO06G01150, NO06G01150 (gene) Nannochloropsis oceanica

Overview
NameNO06G01150
Unique NameNO06G01150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1959
Alignment locationchr6:365212..367170 -

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Properties
Property NameValue
DescriptionAtp-dependent clp protease adaptor protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:365212..367170 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030163protein catabolic process
GO:0019538protein metabolic process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR003769ClpS_core
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
BLAST of NO06G01150 vs. NCBI_GenBank
Match: XP_002176127.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >XP_002181283.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC42878.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC47206.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 86.7 bits (213), Expect = 9.700e-14
Identity = 40/87 (45.98%), Postives = 60/87 (68.97%), Query Frame = 0
Query:  104 KTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPD 191
            +T P+E+++ E  WRV+LHND+VHTF+YV R L +V+ TL R  A+E  +  H    +TI    K  AE+ C+ LQ++GLT+S++PD
Sbjct:    1 ETLPEEQKRKEEMWRVVLHNDEVHTFNYVIRSLCKVIGTLDRKAAFEICVQTHGIGKATITKTWKKQAEQHCLGLQRQGLTVSISPD 87          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: XP_013228004.1 (ATP-dependent Clp protease adaptor domain-containing protein, putative [Eimeria tenella] >AET50543.1 hypothetical protein [Eimeria tenella] >CDJ37166.1 ATP-dependent Clp protease adaptor domain-containing protein, putative [Eimeria tenella])

HSP 1 Score: 86.3 bits (212), Expect = 1.300e-13
Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 0
Query:   71 PRLAALSMSDTGLGTGKQAK----GGVKVGVKEREATKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGE 199
            PR++ + +S   L   +Q +    G  +V        +  P+++ +   EWRV+LHNDD+HTF+ V   + + +P ++R++A++  L AH+   +TI +  K  A E  + LQKEGLT+SV PD  F KD +
Sbjct:  182 PRISRIPLSTKQLKRAQQEEIQTVGDSQVKKDAALEDREGPEKRRQRVKEWRVVLHNDDIHTFECVENAITKTLPHISRARAYDIALHAHTTSKATIMLTWKEKAGEVALALQKEGLTVSVLPDRLFNKDSD 313          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: CDI86138.1 (ATP-dependent Clp protease adaptor domain-containing protein, putative [Eimeria praecox])

HSP 1 Score: 86.3 bits (212), Expect = 1.300e-13
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 0
Query:   97 VKEREAT--KTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGE 199
            VKEREA   K   +++ +   +WRV+LHNDD+HTF+ V   + +V+P ++R++A++  L AH++  +TI +  +  A E  M LQ EGLT+SV PD  F K  E
Sbjct:   23 VKEREAVEDKEGAEKRRQRVKDWRVVLHNDDIHTFECVEDAITKVLPHISRARAYDIALHAHTNSKATIMLTWEEKATEVAMALQGEGLTVSVLPDKLFNKQEE 126          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: XP_005832032.1 (hypothetical protein GUITHDRAFT_94819 [Guillardia theta CCMP2712] >EKX45052.1 hypothetical protein GUITHDRAFT_94819 [Guillardia theta CCMP2712])

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-12
Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 0
Query:   88 QAKGGVKVGVKER-----EATKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPD 191
            Q  GG  V V  +     +A     KE+   E  WRVLLHNDDVHTFDYV   + +VV T+TR KA   T+ AH    +T+    K  A E+ + LQK GLT S+AP+
Sbjct:   83 QEGGGAGVAVLTKPPDLDKAADYEKKEQVDKEPIWRVLLHNDDVHTFDYVIDTIVKVVRTVTRKKAHRITMEAHKSGLATVTTTWKQLAREYSLGLQKAGLTSSIAPE 190          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: EJK64246.1 (hypothetical protein THAOC_15039, partial [Thalassiosira oceanica])

HSP 1 Score: 82.4 bits (202), Expect = 1.800e-12
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0
Query:  105 TSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFK 195
            T  +E++  E  WRV+LHND+VHTF+YV R L +V+ TL + KA++     H    +T+    K  A ++C+ LQ++GLT S+APDS F+
Sbjct:   27 TEMEEEDIPEEMWRVVLHNDEVHTFNYVIRSLQKVMGTLDKKKAFDICTVTHGIGQATVTSCWKEQAMKYCLGLQRQGLTASIAPDSKFE 116          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: EJK67659.1 (hypothetical protein THAOC_11279 [Thalassiosira oceanica])

HSP 1 Score: 82.4 bits (202), Expect = 1.800e-12
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0
Query:  105 TSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFK 195
            T  +E++  E  WRV+LHND+VHTF+YV R L +V+ TL + KA++     H    +T+    K  A ++C+ LQ++GLT S+APDS F+
Sbjct:   85 TEMEEEDIPEEMWRVVLHNDEVHTFNYVIRSLQKVMGTLDKKKAFDICTVTHGIGQATVTSCWKEQAMKYCLGLQRQGLTASIAPDSKFE 174          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: XP_002287774.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95217.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 82.4 bits (202), Expect = 1.800e-12
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 0
Query:   99 EREATKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGSQG 208
            ++E T T  +E +  E  WRV+LHND+VHTF+YV R L +V+ TL + KA +  +  H    +T+    K  A ++C+ +Q+ GLT S+AP+  F       EGGG+ G
Sbjct:   89 DKEETDTQMEEDDTPEEVWRVILHNDEVHTFNYVIRSLQKVIGTLDKKKAHDICVVTHGTGQATVTQCWKEQAMKYCVGMQRFGLTASIAPEGKF-------EGGGNDG 190          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: XP_766490.1 (hypothetical protein [Theileria parva strain Muguga] >EAN34207.1 hypothetical protein TP01_0969 [Theileria parva])

HSP 1 Score: 80.5 bits (197), Expect = 6.900e-12
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 0
Query:   97 VKEREATKTSPKEKEKFEVE---WRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPD 191
            +KE+E T+TSP  KE+ E E   WRV+L+NDD+H F YV+  +++ VP L  ++A   TL AH +  + I    K  AE++C +LQK GLT+    D
Sbjct:   99 LKEKEVTQTSPGSKEEREKEVNSWRVILYNDDIHNFMYVTESISKCVPQLPLARAHLITLEAHKNGQAEIIRTWKDKAEQYCRELQKFGLTVCTIND 195          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: KOO30982.1 (ATP-dependent clp protease adaptor protein containing protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 80.5 bits (197), Expect = 6.900e-12
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 0
Query:  108 KEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPD 191
            KE    +  W+VLLHNDDVHTF+Y +  +  VV T+ R KA   T+ AHS   + +    K  A+EFC+ LQK GLT S++P+
Sbjct:   66 KEDVSLDANWKVLLHNDDVHTFEYCTGAICSVVRTIKRKKAHTITVQAHSMGTAVVTQTYKQKAKEFCLGLQKYGLTSSISPE 148          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: XP_001349940.1 (ATP-dependent Clp protease adapter protein ClpS [Plasmodium falciparum 3D7] >CAD52348.1 ATP-dependent Clp protease adapter protein ClpS [Plasmodium falciparum 3D7] >ETW40977.1 hypothetical protein PFNF135_04614 [Plasmodium falciparum NF135/5.C10] >KNG78050.1 ATP-dependent Clp protease adaptor protein ClpS containing protein [Plasmodium falciparum IGH-CR14] >KOB88892.1 hypothetical protein PFDG_03834 [Plasmodium falciparum Dd2] >PKC47298.1 ATP-dependent Clp protease adapter protein ClpS [Plasmodium falciparum NF54])

HSP 1 Score: 79.0 bits (193), Expect = 2.000e-11
Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 0
Query:  100 REATKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFK 195
            +EA +   KE+EK    W+V+L+NDD+H F YV+  + +VV  ++++KA   T+ AHS   + I    K+ AE++C +LQ+ GLT+S+  +S  K
Sbjct:   93 KEADEHEKKEREKETSAWKVILYNDDIHNFTYVTDVIVKVVGQISKAKAHTITVEAHSTGQALILSTWKSKAEKYCQELQQNGLTVSIIHESQLK 187          
The following BLAST results are available for this feature:
BLAST of NO06G01150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002176127.19.700e-1445.98predicted protein, partial [Phaeodactylum tricornu... [more]
XP_013228004.11.300e-1334.85ATP-dependent Clp protease adaptor domain-containi... [more]
CDI86138.11.300e-1342.31ATP-dependent Clp protease adaptor domain-containi... [more]
XP_005832032.11.100e-1244.44hypothetical protein GUITHDRAFT_94819 [Guillardia ... [more]
EJK64246.11.800e-1243.33hypothetical protein THAOC_15039, partial [Thalass... [more]
EJK67659.11.800e-1243.33hypothetical protein THAOC_11279 [Thalassiosira oc... [more]
XP_002287774.11.800e-1239.45predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_766490.16.900e-1243.30hypothetical protein [Theileria parva strain Mugug... [more]
KOO30982.16.900e-1245.78ATP-dependent clp protease adaptor protein contain... [more]
XP_001349940.12.000e-1138.95ATP-dependent Clp protease adapter protein ClpS [P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR098ncniR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000333NSK000333Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01150.1NO06G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613575gene_10683Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100014g8gene4373Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01150.1NO06G01150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01150 ID=NO06G01150|Name=NO06G01150|organism=Nannochloropsis oceanica|type=gene|length=1959bp
GGAAGGGCCTTCGCTGTGTCTGTTACGTGTGGTGTGGTGTTGGGGGATAT
CGACAAATCAAGTCAGAAACTCATGGGCTGATCGCCCATTGTACTAAGGC
TTCGTGATGGTGTGCGTGGGAAAGGGGGGGCATTAATGTGGAGACAGCCG
TCTGCATTTTGTTTCTTCGATATGATTCGTGGCGTCGTTTGAGCGAGTGA
GTGAATAATGGCACTGATGTTTCTGCATCGGCTCGGCCACTGCTTGCCCT
GCCGCACAAACCGTACCACAACTTTCGAGTTGTTGCACCCAAGCAAGAAG
AAAGAGAGCTTGCGAATTGTCTTATCAAGGCGACTGGGCCTTGCGTACTC
ATAATTCATATCAAACCAAGCAAACCACAACAAAACACGCGTCTCGTGGC
GAGTTGCCCCCGTCAACAGCCAAGATCACCTCCACCCTACGCTGTACTGG
GAGCCCAAGCCCCAGTCTCTCAAGATCCACCACCACATATACCTAACACA
GCAGCCATGGCGTCCGTAAGACTACCGTTTTTACTCCACGCCTCTGTCCT
GGTCATGCTTCTGGCTCTTCTCTTGCCGTCGGCGCAGGCGTTTTTTCCCC
AGCAGCAGCTCTTCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCTTTGATAAAGCACAGGACAGgtacgaattaaga
taaacacgagtagcagaggagagaagttgtgtctgtatcctaactgtgac
cggaagtgtggtcggtttgagcatgtggatgtgcggctgagggctgttgc
aatttgttccatggttacttctgggtgtgcgtacacttgtctgcgcctga
agtttaaatctccctggcagtttcgtatgagaataatttacttacttttt
aatgtgcctgcttcgatgcgcccttaaccctctctccctcctgaccacgt
attgaacaaggacgaaactcctcttgacttcacacagatatccttatatt
cttacttacgcccacccaccccgactctcgcgcacctacatatccaccgc
ttgagtagTAAAAGTGCTCCAACGGACACGTGTGATCCCCCGGTTAGCAG
CACTTTCGATGTCGGACACCGGGCTTGGTACGGGCAAGCAAGCCAAGGGT
GGGGTCAAGGTGGGGGTGAAAGAGAGGGAGGCGACCAAGACAAGCCCCAA
GGAGAAGGAGAAGTTCGAGGTGGAATGGCGGGTATTGTTGCACAACGATG
ATGTGCACACTTTTGATTACGTCTCCCGAAAATTGGCCGAGgtacgctgt
tattttcttttttgatctttttttcttaaggtctgctttttttagacaca
ccacctcgatgaccttatcttctcctttctgcccctgtccctccctctca
taagGTCGTACCCACATTAACCCGTTCCAAAGCTTGGGAATGTACATTGG
CCGCGCACTCCCATGATTTTTCCACGATTGCCATCGTGACCAAGACATCT
GCTGAGGAATTTTGCATGAAGCTCCAAAAGGAGGGTTTGACTATCTCCGT
CGCCCCTGACTCGAACTTCAAGAAGGATGGAGAGGGAGGGGAAGGAGGAG
GATCCCAGGGAGGAAAGAAGTAGAGCAGAATGGAAAAGTAGATTGAGAGG
AACAGGAACAGCAGCGGCAGCAGCAAGCACAACACACATGACGATGAAAT
CATAATGAGGCAGGCTTTGGAAAGAATAGGAGAGAAGCAGAGCCGAAGGA
CGTGTAGGATGAAGAGAGGCGAAAAATACGTAGAGAATTAAGCGGTTAAG
CACAACTTTGTGTGTCGGATGGCTCCTCGGGTGGTGCGGGGAAAGAGGAA
AGATGGGGTCTTGGCTTGGAGAGGCCGGTGGGGTAAGGAGGAGGCTGTGC
GCGCGGGAAATGTGAAAACTTTTAAAGAAGACAATACTCCACGAGTATAG
ACAACGTAA
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protein sequence of NO06G01150.1

>NO06G01150.1-protein ID=NO06G01150.1-protein|Name=NO06G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MASVRLPFLLHASVLVMLLALLLPSAQAFFPQQQLFSSSSSSSSSSSSSS
SSSSLIKHRTVKVLQRTRVIPRLAALSMSDTGLGTGKQAKGGVKVGVKER
EATKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWE
CTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGEGG
EGGGSQGGKK*
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Synonyms
Publications