NO06G01040, NO06G01040 (gene) Nannochloropsis oceanica

Overview
NameNO06G01040
Unique NameNO06G01040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1591
Alignment locationchr6:336750..338340 -

Link to JBrowse

Properties
Property NameValue
DescriptionMethylisocitrate lyase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:336750..338340 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR015813Pyrv/PenolPyrv_Kinase-like_dom
Homology
BLAST of NO06G01040 vs. NCBI_GenBank
Match: EWM26084.1 (methylisocitrate lyase [Nannochloropsis gaditana])

HSP 1 Score: 483.8 bits (1244), Expect = 4.700e-133
Identity = 260/357 (72.83%), Postives = 293/357 (82.07%), Query Frame = 0
Query:    2 PSSSASARLRRLLSSSLSTPYPRSLAMPGAFNGLVARAVAHAGFEATYVSGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTGGEGGREGVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAAEARDE--EAEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGADMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLSTIKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMTREETYELLGYTPGKEWVYPSANARGEGRGGGKRSGFVQTGGPV-GKGDEEERGGVG 356
            P  S++ARLR LL+    +    SLA+PGAFNGLVARAVA+AGFEATYVSGAGVAAGMGLPD+GLAG+ED TRV+RDVS CSGLPL+ADADTGGEGG  GVRR+V EYRRAGAA LH+EDQVFPKRCGHL+GK+LVP  +FALK+QAAA ARDE   A EEG G     GG++ICARTDARSV G+E+VIERAK+YVDAGADMIFPEGL +  EFL+VS+AL+GYNGVN GEGP+LLANMTEFGKTPLLS  +MG LGYH TIFPMTLFR AMRGV+E LEELREGGRV    LREGRL+TREETYELLGYTPG+ W YP+ANA    R G +RS FVQ G  V  + DE E  G G
Sbjct:    3 PPPSSAARLRLLLAG--LSARQESLALPGAFNGLVARAVANAGFEATYVSGAGVAAGMGLPDVGLAGLEDMTRVIRDVSACSGLPLLADADTGGEGGEGGVRRVVMEYRRAGAAALHVEDQVFPKRCGHLEGKELVPADEFALKVQAAARARDEGRVAGEEGGG----NGGLMICARTDARSVVGVEEVIERAKRYVDAGADMIFPEGLCSGDEFLRVSQALKGYNGVNGGEGPYLLANMTEFGKTPLLSVRRMGALGYHATIFPMTLFRWAMRGVVEALEELREGGRVSKTALREGRLLTREETYELLGYTPGRVWEYPNANAYSR-RKGTRRSDFVQEGKEVMEEEDENEASGYG 352          
BLAST of NO06G01040 vs. NCBI_GenBank
Match: CEL95544.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 315.5 bits (807), Expect = 2.200e-82
Identity = 172/314 (54.78%), Postives = 209/314 (66.56%), Query Frame = 0
Query:    8 ARLRRLLSSSLSTPYPRSLAMPGAFNGLVARAVAHAGFEATYVSGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTG-GEGGREGVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAAEARDEEAEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGADMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLSTIKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMTREETYELLGYTPGKEWVYPS 321
            ARLR L+           +A+PGAFNGLV R VA AGF+  YVSG  V+A +G PDIGL  +E FTRV+ DV+T SGLP IADADTG GEG  E V + V+EY RAGAAGLHIEDQVFPKRCGHLDGK L+PT D A K+  A  A D  +          +G  ++CARTDAR+VEG++  + RAK YV+AGADMIFPEGL+T +EF + +  ++G  G     GPFLLANMTEFGKTP+L       +GYHC IFP+T  R AM+ V E L  LRE G V+       ++ +R+E Y  L YTPG EW YPS
Sbjct:    6 ARLRALMKQG-------CVALPGAFNGLVGRLVAEAGFDGCYVSGGAVSAAVGCPDIGLLTLEGFTRVIHDVTTSSGLPCIADADTGFGEG--EMVTKTVWEYHRAGAAGLHIEDQVFPKRCGHLDGKALIPTIDMAAKVGRARRASDACS----------DGTFIVCARTDARAVEGMQAAVARAKAYVEAGADMIFPEGLHTESEFAEFASHMKGLRGDAPDGGPFLLANMTEFGKTPMLPLSTYAMMGYHCVIFPVTTLRVAMKPVQEMLATLREKGTVEEWL---PKMYSRQELYSSLRYTPGVEWTYPS 297          
BLAST of NO06G01040 vs. NCBI_GenBank
Match: XP_004037473.1 (methylisocitrate lyase, putative [Ichthyophthirius multifiliis] >EGR33487.1 methylisocitrate lyase, putative [Ichthyophthirius multifiliis])

HSP 1 Score: 293.9 bits (751), Expect = 6.800e-76
Identity = 156/294 (53.06%), Postives = 202/294 (68.71%), Query Frame = 0
Query:   28 MPGAFNGLVARAVAHAGFEATYVSGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTG-GEGGREGVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAAEARDEEAEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGADMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLSTIKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMTREETYELLGYTPGKEWVYPS 321
            +PGAFNG+V R  A  GF+A YVSGA V A  G+PDIGL   + F +++++VS  SGLP++ADADTG GEG  E   R V+EY ++GA+GLHIEDQ+FPKRCGHLDGK LV   DF  K+Q AAE             +   G  +ICARTDARSVEG++ VI R+K Y+DAGADMIFPEGL +A EF +V++AL+GY       GPFLLANMTE+GKTP +      + GY+C I+P++  R AM+ V +  ++L   G  + K+L    + TR+E YE LGYTPGKEW+YP+
Sbjct:    2 VPGAFNGMVGRIAADNGFQALYVSGAAVTASSGVPDIGLITFDGFCKIIKEVSMSSGLPVLADADTGFGEG--EMCARTVWEYFQSGASGLHIEDQIFPKRCGHLDGKSLVSQQDFVRKVQIAAET----------SLKCSNGQFIICARTDARSVEGLDSVITRSKAYIDAGADMIFPEGLGSAEEFQQVAQALKGYGPKG---GPFLLANMTEYGKTPYIHIDDFKKWGYNCVIYPVSTLRVAMKAVDDFFKQLNNDG-TQQKSL--NNMQTRKELYETLGYTPGKEWIYPN 277          
BLAST of NO06G01040 vs. NCBI_GenBank
Match: XP_001009641.2 (methylisocitrate lyase [Tetrahymena thermophila SB210] >EAR89396.2 methylisocitrate lyase [Tetrahymena thermophila SB210])

HSP 1 Score: 291.2 bits (744), Expect = 4.400e-75
Identity = 157/300 (52.33%), Postives = 205/300 (68.33%), Query Frame = 0
Query:   26 LAMPGAFNGLVARAVAHAGFEATYVSGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTG-GEGGREGVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAAEARDEEAEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGADMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLSTIKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMTREETYELLGYTPGKEWVYPSANAR 325
            + +PGAFNG+ AR  A  GF++ YVSGA V A  G+PDIGL  ++ F +V+++VS  SGLP+IADADTG GEG  E   R V++Y +AGA+GLHIEDQVFPKRCGHLDGK LVP  DFA K+Q A +A            +  +G  VICARTDARSVEG++ VIER+K Y+DAGADMIFPEGL TA EF  V++AL+GY       GP+LLANMTEFGKTP +        GY+  I+P++  R AM+ V +  ++L   G  + K++ +  + TR++ Y  LGYTPG EW+YP+   +
Sbjct:   19 IMVPGAFNGMSARIAAENGFKSLYVSGAAVTASTGVPDIGLVTLDGFCKVIKEVSMASGLPVIADADTGFGEG--EMCARTVWDYFQAGASGLHIEDQVFPKRCGHLDGKALVPKEDFAKKVQIAVDA----------SKKCSDGEFVICARTDARSVEGLDAVIERSKAYIDAGADMIFPEGLNTAEEFRVVAQALKGYGPKG---GPYLLANMTEFGKTPYIHVNDFKSWGYNIVIYPVSSLRVAMKAVDDLFKQLAADG-TQEKSVPD--MQTRKQLYSTLGYTPGVEWIYPNMTTK 300          
BLAST of NO06G01040 vs. NCBI_GenBank
Match: PFH32396.1 (carboxyvinyl-carboxyphosphonate phosphorylmutase [Besnoitia besnoiti])

HSP 1 Score: 287.7 bits (735), Expect = 4.900e-74
Identity = 158/318 (49.69%), Postives = 200/318 (62.89%), Query Frame = 0
Query:    9 RLRRLLSSSLSTPYPRSLAMPGAFNGLVARAVAHAGFEATYVSGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTGGEGGREGVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAAEARDEEAEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGADMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLSTIKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMTREETYELLGYTPGKEWVYPSANARGE 327
            RLRRL+ S         + +PGA +G+ AR    AGF+  YVSGA ++A  G+PDIGL  +EDFTR +   +  + LP++ADADT G GG E VRR VFEY RAGAAGLHIEDQ FPK+CGHLDGK L+P      KI+AAA A  E A          +G  +ICARTDAR VE I+  +ERA +Y  AGADMIFPEGL T AEF   + AL    G     GP+LLANMTEFG+TPL        LGYH  I+P++  R AM+G+ E L +LR+ G V+       ++ TR+E Y+ L YTP + W +PS ++  E
Sbjct:   10 RLRRLMQSG-------CVMLPGAHDGMTARLACEAGFKGLYVSGAALSATQGVPDIGLLSLEDFTRAIAQAAAVTNLPILADADT-GFGGTEMVRRTVFEYNRAGAAGLHIEDQEFPKKCGHLDGKSLIPLDAMEEKIRAAAAAAQECA----------DGSFIICARTDARGVESIDAAVERAVRYAQAGADMIFPEGLQTEAEFQAFAHALAVLPGKAPFGGPYLLANMTEFGRTPLTLLTTFERLGYHAVIYPVSPLRVAMKGIKEMLVDLRKNGSVENSI---DKMYTRQELYKTLKYTPAELWQFPSPSSANE 306          
BLAST of NO06G01040 vs. NCBI_GenBank
Match: EJY85769.1 (methylisocitrate lyase, putative (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 283.9 bits (725), Expect = 7.100e-73
Identity = 148/294 (50.34%), Postives = 196/294 (66.67%), Query Frame = 0
Query:   28 MPGAFNGLVARAVAHAGFEATYVSGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTG-GEGGREGVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAAEARDEEAEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGADMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLSTIKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMTREETYELLGYTPGKEWVYPS 321
            MPGA+NGL AR +A   F+ATY+SGA +    G+PDIG+ G++DFT+ ++D+   S LP+IADADTG GEG  E   + V+EY +AGAAGLHIEDQ FPKRCGHL GK L+P ++   K+Q  A  RD          +   G  +ICARTDAR VEG++  I RAK ++DAGADMIFPEGL +  EF  VS+AL+     N  +  +LLANMTEFGKTP +S     + GY C I+P++  R AM  + + L +L+  GRV  + L+   ++TR+E Y+LL Y PG+EW YPS
Sbjct:    1 MPGAYNGLTARMIAQMNFKATYLSGASLTGSRGVPDIGVLGLQDFTQTIKDIYDSSELPIIADADTGFGEG--EMCAKTVYEYIKAGAAGLHIEDQEFPKRCGHLAGKTLIPISEMTKKVQICANQRD----------KHSNGDFIICARTDARGVEGLDSAINRAKHFIDAGADMIFPEGLESLQEFEIVSQALK-----NHKKEIYLLANMTEFGKTPHISLQDFQQRGYSCVIYPVSTLRIAMGAIQKFLAQLQSEGRVTDEMLQS--MLTRQELYDLLNYKPGEEWYYPS 275          
BLAST of NO06G01040 vs. NCBI_GenBank
Match: XP_008884761.1 (carboxyvinyl-carboxyphosphonate phosphorylmutase [Hammondia hammondi] >KEP64546.1 carboxyvinyl-carboxyphosphonate phosphorylmutase [Hammondia hammondi])

HSP 1 Score: 283.1 bits (723), Expect = 1.200e-72
Identity = 156/321 (48.60%), Postives = 205/321 (63.86%), Query Frame = 0
Query:    2 PSSSASARLRRLLSSSLSTPYPRSLAMPGAFNGLVARAVAHAGFEATYVSGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTGGEGGREGVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAAEARDEEAEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGADMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLSTIKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMTREETYELLGYTPGKEWVYPSAN 323
            P+  A  RLR L+         + + +PGA+NGL AR  A AGFE  YVSGA ++A  G+PDIG+ G+EDFTRV+   ++ + LP++ADADT G GG E VRR VF Y +AGAAGLHIEDQ+ PK+CGHL+GKQLV   +   KI+AAA A  + +           G  ++CARTDAR V+G++  +ERA +Y  AGADM+FPEGL T  EF   + AL    G     GP+LLANMTEFGKTP++       LGYHC I+P++  R AM+ V   L +LR+ G V G +L+  ++ TR+E Y  L Y P   W YPSA+
Sbjct:   52 PALHAGQRLRSLMQK-------KCVMLPGAYNGLTARLAAEAGFEGVYVSGAALSACQGVPDIGILGLEDFTRVISQAASVTSLPVLADADT-GFGGPEMVRRTVFAYNQAGAAGLHIEDQLLPKKCGHLEGKQLVSIEEMEEKIKAAAAASQDCS----------NGDFIVCARTDARGVDGLDAAVERAVRYAVAGADMLFPEGLETEEEFQAFAHALAVLPGKAPFGGPYLLANMTEFGKTPIMELSVFENLGYHCVIYPVSPLRVAMKSVKGMLVDLRKNGSV-GHSLK--KMYTRQELYSTLHYRPEGPWTYPSAS 351          
BLAST of NO06G01040 vs. NCBI_GenBank
Match: KRX08780.1 (Pyruvate/Phosphoenolpyruvate kinase-like domain [Pseudocohnilembus persalinus])

HSP 1 Score: 282.7 bits (722), Expect = 1.600e-72
Identity = 151/293 (51.54%), Postives = 195/293 (66.55%), Query Frame = 0
Query:   28 MPGAFNGLVARAVAHAGFEATYVSGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTG-GEGGREGVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAAEARDEEAEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGADMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLSTIKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMTREETYELLGYTPGKEWVYP 320
            +PGAFNG+ AR  A  GF+  Y+SGA V A  G+PDIGL  ++ F + +++VS  SGLP+IADADTG GEG  E   + V+EY   GA+GLHIEDQVFPKRCGHLDGK L+   DFA K+Q A      +A +E  GG       +ICARTDA+SVEGIE V++R+K Y+DAGADMIFPEGL+T  EF  V+K L+GY       GP LLANMTEFGKTP +      + GY+C I+P++  R A + +   L++L++ G  +G       + TR+E Y  LGYTPG EW +P
Sbjct:   21 LPGAFNGMSARLAAENGFKGLYISGAAVTASSGVPDIGLVTLDGFCKTIKEVSLSSGLPIIADADTGFGEG--EMTAKTVWEYYLNGASGLHIEDQVFPKRCGHLDGKTLISPEDFAKKVQIAV-----QASKECSGGE-----FIICARTDAKSVEGIEAVVKRSKTYIDAGADMIFPEGLHTLEEFEFVAKELKGYGPKG---GPLLLANMTEFGKTPYIKLEDFEKAGYNCVIYPVSTLRIANKAIDLFLKDLQKNGTQEGSV---ENMQTRKELYGTLGYTPGAEWTFP 295          
BLAST of NO06G01040 vs. NCBI_GenBank
Match: KYF39790.1 (carboxyvinyl-carboxyphosphonate phosphorylmutase [Toxoplasma gondii ARI])

HSP 1 Score: 282.7 bits (722), Expect = 1.600e-72
Identity = 157/317 (49.53%), Postives = 202/317 (63.72%), Query Frame = 0
Query:    6 ASARLRRLLSSSLSTPYPRSLAMPGAFNGLVARAVAHAGFEATYVSGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTGGEGGREGVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAAEARDEEAEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGADMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLSTIKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMTREETYELLGYTPGKEWVYPSAN 323
            A  RLR L+         + + +PGA+NGL AR  A AGFE  YVSGA ++A  G+PDIG+ G+EDFTRV+   ++ + LP++ADADT G GG E VRR VF Y +AGAAGLHIEDQ  PK+CGHL+GKQLV   +   KI+AAA A  + +           G  +ICARTDARSV+G++  +ERA +Y  AGADM+FPEGL T  EF   + AL    G     GP+LLANMTEFGKTP++       LGYHC I+P++  R AM+ V   L +LR+ G V G +L   ++ TR+E Y  L Y P   W YPSA+
Sbjct:   62 AGQRLRSLMQK-------KCVMLPGAYNGLTARLAAEAGFEGVYVSGAALSACQGVPDIGILGLEDFTRVISQAASVTSLPVLADADT-GFGGPEMVRRTVFAYNQAGAAGLHIEDQRLPKKCGHLEGKQLVSIEEMEEKIKAAAAASQDCS----------NGDFIICARTDARSVDGLDAAVERAVRYTAAGADMLFPEGLETEEEFQAFAHALAVLPGKAPFGGPYLLANMTEFGKTPIMELSTFEGLGYHCVIYPVSPLRVAMKSVKGMLVDLRKNGSV-GHSLE--KMYTRQELYSTLNYRPEGTWTYPSAS 357          
BLAST of NO06G01040 vs. NCBI_GenBank
Match: XP_003879619.1 (carboxyvinyl-carboxyphosphonate phosphorylmutase protein, related [Neospora caninum Liverpool] >CBZ49584.1 carboxyvinyl-carboxyphosphonate phosphorylmutase protein, related [Neospora caninum Liverpool] >CEL64164.1 TPA: Carboxyvinyl-carboxyphosphonate phosphorylmutase protein, related [Neospora caninum Liverpool])

HSP 1 Score: 282.3 bits (721), Expect = 2.100e-72
Identity = 153/318 (48.11%), Postives = 200/318 (62.89%), Query Frame = 0
Query:    6 ASARLRRLLSSSLSTPYPRSLAMPGAFNGLVARAVAHAGFEATYVSGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTGGEGGREGVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAAEARDEEAEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGADMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLSTIKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMTREETYELLGYTPGKEWVYPSANA 324
            A  RLRRL+         + + +PGA NG+ AR  A AGFE  YVSGA ++A  G+PDIGL G++DFTR +   S  + LP++ADADT G GG E VRR VF Y +AGAAGLHIEDQ+ PK+CGHL+GKQL+P      KI+AA  A  + +           G  +ICARTDAR  +G++  +ERA +Y  AGADMIFPEGL T AEF   + AL    G     GP+LLANMTEFGKTP+        +GYHC I+P++  R AM+ + + L  LR+ G V G++L   ++ TR++ Y  L Y P + W YPS +A
Sbjct:    9 AGERLRRLMQK-------KCIMLPGAHNGITARLAAEAGFEGLYVSGAALSASQGVPDIGLLGLDDFTRAIAQASAVTSLPVLADADT-GFGGPEMVRRTVFAYNQAGAAGLHIEDQLLPKKCGHLEGKQLIPIEAMEEKIKAAVGAAQDCS----------RGDFIICARTDARGADGLDAAVERAVRYTQAGADMIFPEGLQTEAEFQAFAHALSVLPGKAPFGGPYLLANMTEFGKTPMTELAAFESIGYHCVIYPVSPLRVAMKSIKDMLIHLRKDGSV-GQSLE--KMYTRQDLYSTLRYRPMEPWTYPSPSA 305          
The following BLAST results are available for this feature:
BLAST of NO06G01040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26084.14.700e-13372.83methylisocitrate lyase [Nannochloropsis gaditana][more]
CEL95544.12.200e-8254.78unnamed protein product [Vitrella brassicaformis C... [more]
XP_004037473.16.800e-7653.06methylisocitrate lyase, putative [Ichthyophthirius... [more]
XP_001009641.24.400e-7552.33methylisocitrate lyase [Tetrahymena thermophila SB... [more]
PFH32396.14.900e-7449.69carboxyvinyl-carboxyphosphonate phosphorylmutase [... [more]
EJY85769.17.100e-7350.34methylisocitrate lyase, putative (macronuclear) [O... [more]
XP_008884761.11.200e-7248.60carboxyvinyl-carboxyphosphonate phosphorylmutase [... [more]
KRX08780.11.600e-7251.54Pyruvate/Phosphoenolpyruvate kinase-like domain [P... [more]
KYF39790.11.600e-7249.53carboxyvinyl-carboxyphosphonate phosphorylmutase [... [more]
XP_003879619.12.100e-7248.11carboxyvinyl-carboxyphosphonate phosphorylmutase p... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR098ncniR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000345NSK000345Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01040.1NO06G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626452gene_10694Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100014g20gene4384Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01040.1NO06G01040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01040 ID=NO06G01040|Name=NO06G01040|organism=Nannochloropsis oceanica|type=gene|length=1591bp
ATGCCATCCTCCTCCGCCAGCGCCCGCCTCCGCCGCCTCCTCTCCTCCTC
CCTCTCTACCCCCTATCCACGAAGCCTGGCCATGCCCGGTGCGTTCAATG
GTCTCGTTGCACGTGCAGTCGCACATGCAGGCTTTGAAGCTACCTATGTG
TCAGGCGCGGGCGTTGCTGCAGGAATGGGGTTGCCTGACATTGGACTGGC
AGgtaagcagaatgagaggttgaaaggctttgtgggcgcagactctgcct
tagctcctttctttccctcttgattttagttccttccatttctcttttat
actctcttgcagctccctgcttctcagacgcccaatcccttcttcgctcc
cttcctccctaggcctaggagtttttgttcgcataaccaaagacatgtta
tcttgctccagactcccccccaccccatcgaccttctctctctctctgtc
cctccctcctcttctttcccttcctacattgttcaccttcggcaaatttg
caacccctcattttcatctttccctccctcactccctccctctttctccc
aagGCATCGAGGATTTCACACGCGTCGTTCGCGACGTGTCCACCTGCTCC
GGTCTCCCCTTAATCGCCGACGCCGATACCGGAGGAGAGGGCGGGAGGGA
GGGCGTGCGTCGGCTTGTCTTCGAGTACAGGCGAGCAGGAGCCGCTGGTT
TGCACATTGAAGATCAGGTTTTCCCAAAGAGATGTGGTCATTTGGATGGA
AAGCAATTGGTTCCCACCGCAGACTTTGCCTTGAAAATACAGGCAGCAGC
GGAAGCGAGGGACGAGGAAGCAGAAGAGGAAGGTCAAGGAGGGAGGGAGA
AGGAGGGAGGGATGGTGATCTGCGCGAGGACAGATGCAAGGTCGGTAGAA
GGGATTGAGAAGGTGATTGAGCGGGCGAAGCAGTATGTTGATGCGGGGGC
GGACATGATCTTCCCAGAGGGTTTGTACACGGCGGCGGAGTTTTTAAAAG
TGAGCAAGGCCTTGAGAGGTTACAATGGGGTGAATGAAGGAGAAGGGCCG
TTTCTCTTGGCAAATATGACGGAGTTTGGAAAGACACCTCTGCTCTCTAC
CATCAAAATGGgtgagtgagtcgggagggaggacggggagtggaggcatc
tgtcgagcgtgtcccacttacgcgaatgctactttccctcgtcttttctt
tgtgttgttttccgtttttaacctcccttcttctctctttgtccccattt
ccctttttctcctcctagGTGAGCTCGGCTATCACTGCACCATTTTTCCC
ATGACTCTTTTCCGACGGGCCATGCGTGGAGTCATGGAAGGGTTGGAGGA
GCTGAGGGAGGGCGGGAGGGTGAAAGGGAAAACGTTGAGGGAGGGGAGAT
TGATGACAAGGGAGGAGACGTATGAACTTCTGGGATATACGCCTGGGAAG
GAGTGGGTTTACCCGAGCGCGAACGCAAGGGGGGAGGGAAGGGGGGGAGG
GAAAAGGAGTGGGTTTGTACAGACTGGGGGGCCTGTGGGCAAGGGGGATG
AGGAGGAAAGAGGAGGAGTGGGAAGAGGAAAAGTGAGGTAG
back to top

protein sequence of NO06G01040.1

>NO06G01040.1-protein ID=NO06G01040.1-protein|Name=NO06G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MPSSSASARLRRLLSSSLSTPYPRSLAMPGAFNGLVARAVAHAGFEATYV
SGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTGGEGGRE
GVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAA
EARDEEAEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGA
DMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLST
IKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMT
REETYELLGYTPGKEWVYPSANARGEGRGGGKRSGFVQTGGPVGKGDEEE
RGGVGRGKVR*
back to top
Synonyms
Publications