NO06G01000, NO06G01000 (gene) Nannochloropsis oceanica

Overview
NameNO06G01000
Unique NameNO06G01000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1398
Alignment locationchr6:326319..327716 -

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Properties
Property NameValue
DescriptionElongator complex protein 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:326319..327716 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0033588Elongator holoenzyme complex
GO:0033588Elongator holoenzyme complex
Vocabulary: Biological Process
TermDefinition
GO:0002098tRNA wobble uridine modification
GO:0002098tRNA wobble uridine modification
Vocabulary: INTERPRO
TermDefinition
IPR008728Elongator_complex_protein_4
Homology
BLAST of NO06G01000 vs. NCBI_GenBank
Match: EWM26090.1 (elongator complex protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 424.9 bits (1091), Expect = 3.300e-115
Identity = 242/440 (55.00%), Postives = 296/440 (67.27%), Query Frame = 0
Query:    3 SSSSSFRRLDRPVTTTMTGQGISIEHLSPSKIAPPPPKAPGTRPWINGNTLISSGNKDLDSVLGGGLCLGTLTLVEEDRFSDHALLLGKYFVAQGVSGQQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQKKPALSSIPATSTRSTPPPSALSTFPSGLQQALPTLPFLSTKIEDPLSIAWQYRKYIG--KGHSXXXXXXXXXXXXFCHSYDLSRTMQTEVLAAATAPPLLIDLADITDDNKHLQQGNGGNAHTNVNSLSHVYDAVASTLQSLPPRTVLRVLLKSFLAKTSAWPTASPGHALLLLHSLQQLARGQPMVVLVTLPSCHLSRRQLRLFSRVADTVLELSSFAARGREGGREGGPREFEAFAGLLYVKGLQHINALAPVRGTSNKWGVRRDRRKLYIEPLHLPPEGVRTLTEDVEEKKGGRKR 441
            +S SSFRR+DRPVTT++  Q     +   S I   PP+APGT+PWINGNTLISSGN+DLDSVLGGG+CLGT+TLVEEDRFSDHAL+L KYF+AQGVSG  +CLV+GAEGSKAAL++T+V QLPFDLTYK+N+Q +QE+E +     S P+++  + P    LSTF   L  +LP+   +     DPLSIAWQYRKYI                   FC+SYDLSR +Q EV            L                       + S VY +VAS ++SLP  TVLRV++KSFL KT AW +A  G  LLLLHSL++L R  P+ + VTL + H+ +RQ RL +RVADTVLEL SFA     G R     EFEAFAG L++K LQH+NALAP+RG SNK GV+RDRRKL+IEPLHLPPEGVRTLTEDVE +K GR+R
Sbjct:   19 ASLSSFRRIDRPVTTSVPKQ-----YDISSSIPTVPPRAPGTKPWINGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRP----LSTFSRELGDSLPS---VGGPRHDPLSIAWQYRKYINTPTPPPRGSASTAPASSSFCNSYDLSRDIQPEV------------LXXXXXXXXXXXXXXXXXXXXXXXACSRVYQSVASAIKSLPENTVLRVVIKSFLTKTGAWASAHEGEPLLLLHSLRRLIRHHPVAIFVTLSAHHVPQRQRRLLARVADTVLELQSFA-----GHRHRTAPEFEAFAGFLHIKALQHLNALAPIRGPSNKLGVKRDRRKLHIEPLHLPPEGVRTLTEDVEMQKRGRRR 429          
BLAST of NO06G01000 vs. NCBI_GenBank
Match: XP_005856352.1 (elongator complex protein 4, partial [Nannochloropsis gaditana CCMP526] >EKU20008.1 elongator complex protein 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 199.5 bits (506), Expect = 2.300e-47
Identity = 98/141 (69.50%), Postives = 120/141 (85.11%), Query Frame = 0
Query:    3 SSSSSFRRLDRPVTTTMTGQGISIEHLSPSKIAPPPPKAPGTRPWINGNTLISSGNKDLDSVLGGGLCLGTLTLVEEDRFSDHALLLGKYFVAQGVSGQQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQK 144
            +S SSFRR+DRPVTT++  Q     +   S I   PP+APGT+PWINGNTLISSGN+DLDSVLGGG+CLGT+TLVEEDRFSDHAL+L KYF+AQGVSG  +CLV+GAEGSKAAL++T+V QLPFDLTYK+N+Q +QE+E +
Sbjct:    7 ASLSSFRRIDRPVTTSVPKQ-----YDISSSIPTVPPRAPGTKPWINGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDR 142          
BLAST of NO06G01000 vs. NCBI_GenBank
Match: POM59463.1 (Elongator complex protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 128.6 bits (322), Expect = 4.900e-26
Identity = 126/409 (30.81%), Postives = 178/409 (43.52%), Query Frame = 0
Query:   43 GTRPWINGNTLISSGNKDLDSVLGGGLCLGTLTLVEEDRFSDHALLLG------------KYFVAQGVS-GQQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQKKPALSSIPATSTRSTPPPSALSTFPSGLQQALPTLPFLSTKIEDPLSIAWQYRKYIGKGHSXXXXXXXXXXXXFCHSYDLSRTMQTEVLAAATAPPLLIDLADITDDNKHLQQGNGGNAHTNVNSLSHVYDAVASTLQSLPPR-------TVLRVLLKSFLAKTSAWPTASPGHALL-LLHSLQQLARG-QPMVVLVTLPSCHLSRRQLRLFS---RVADTVLELSSFAARGREGGREGGPREFEAFAGLLYVKGLQHINALAPVRGTSNKWGVRRDRRKLYIEPLHLPPEGVRT 427
            GT+P++NG  L+SSG  +LD  LGGGL L TL LVE    SD  L +G            +YFVA+GV+ G+QR  +V  + +    E     QLP +L+  + +  +Q  E                                         TK +  L+IAWQY KY  K               FCHS+DLS+ M  E+L A    P+ ID     D N                ++S VY+ +   ++ L  +        VLRV +    +     P A+   AL      L+ L  G +  V L  L S  LS       +    V+D+VL L+SFA     G R+  P E   F G L ++ L  ++ALA    ++ ++GV+R+RRKL IE  HLPPEG R+
Sbjct:   17 GTKPFVNGQILVSSGLSELDGALGGGLLLNTLNLVETSPPSDETLDVGAAASDALAVDLLRYFVAEGVADGKQRVAIVAPDAAGFVQE-----QLPLELSLAQRQVKQQLAE-----------------------------------------TKDDTTLTIAWQYGKYEEK---------RKEKQRFCHSFDLSKKMHIEMLGA--NEPIKIDPLVWMDSNA---------------TVSEVYELLYCAIEELVQQEKTKEKDQVLRVGVLGLGSPLLGAPDATHMTALFTFFRRLRTLLGGLKSAVCLAVLASDALSAFPTAFMNELRHVSDSVLALNSFA-----GTRDLLPDELHEFQGSLALRKLPRVHALACHAPSNTRFGVKRERRKLKIEKFHLPPEGSRS 348          
BLAST of NO06G01000 vs. NCBI_GenBank
Match: POM76431.1 (Elongator complex protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 126.7 bits (317), Expect = 1.900e-25
Identity = 125/409 (30.56%), Postives = 178/409 (43.52%), Query Frame = 0
Query:   43 GTRPWINGNTLISSGNKDLDSVLGGGLCLGTLTLVEEDRFSDHALLLG------------KYFVAQGVS-GQQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQKKPALSSIPATSTRSTPPPSALSTFPSGLQQALPTLPFLSTKIEDPLSIAWQYRKYIGKGHSXXXXXXXXXXXXFCHSYDLSRTMQTEVLAAATAPPLLIDLADITDDNKHLQQGNGGNAHTNVNSLSHVYDAVASTLQSLPPR-------TVLRVLLKSFLAKTSAWPTASPGHALL-LLHSLQQLARG-QPMVVLVTLPSCHLSRRQLRLFS---RVADTVLELSSFAARGREGGREGGPREFEAFAGLLYVKGLQHINALAPVRGTSNKWGVRRDRRKLYIEPLHLPPEGVRT 427
            GT+P++NG  L+SSG  +LD  LGGGL L TL LVE    SD  L +G            +YFVA+GV+ G+QR  +V  + +    E     QLP +L+  + +  +Q  E                                         TK +  L+IAWQY KY  K               FCHS+DLS+ M  E+L A    P+ ID     D N                ++S VY+ +   ++ +  +        VLRV +    +     P A+   AL      L+ L  G +  V L  L S  LS       +    V+D+VL L+SFA     G R+  P E   F G L ++ L  ++ALA    ++ ++GV+R+RRKL IE  HLPPEG R+
Sbjct:  123 GTKPFVNGQILVSSGLSELDGALGGGLLLNTLNLVETSPPSDETLDVGAAASDALAVDLLRYFVAEGVADGKQRVAIVAPDAAGFIQE-----QLPLELSLAQRQVKQQLAE-----------------------------------------TKDDTTLTIAWQYGKYEEK---------QKEKQRFCHSFDLSKKMHIEMLGA--NEPIKIDPLVWMDSNA---------------TVSEVYELLYCAIEEVVQQEKTKEKDQVLRVGVLGLGSPLLGPPDATHMTALFTFFRRLRTLLGGSKSAVCLAVLASDALSAFPTAFMNELRHVSDSVLALNSFA-----GTRDLLPDELHEFQGSLTLRKLPRVHALACHAPSNTRFGVKRERRKLKIEKFHLPPEGSRS 454          
BLAST of NO06G01000 vs. NCBI_GenBank
Match: GAX99551.1 (tetraacyldisaccharide 4'-kinase, putative, partial [Pythium insidiosum])

HSP 1 Score: 125.9 bits (315), Expect = 3.200e-25
Identity = 126/431 (29.23%), Postives = 186/431 (43.16%), Query Frame = 0
Query:   38 PPKAPGTRPWINGNTLISSGNKDLDSVLGGGLCLGTLTLVE---EDRFSDHALL---LGKYFVAQGVSGQQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQKKPALSSIPATSTRSTPPPSALSTFPSGLQQALPTLPFLSTKIEDPLSIAWQYRKYIGKGHSXXXXXXXXXXXXFCHSYDLSRTMQTEVLAAATAPPLLIDLADITDDNKHLQQGNGGNAHTNVNSLSHVYDAVASTLQ----------SLPPRTVLRVLLKSFLAKTSAWPTASPGHAL-LLLHSLQQLARGQPMVVLVTLPSCHLSRRQLRLFS---RVADTVLELSSFAARGREGGREGGPREFEAFAGLLYVKGLQHINALAPVRGTSNKWGVRRDRRKLYIEPLHLPPEGVR--TLTEDVEEKKGGRKRNRGKVP 447
            P +A GT+P++NG TL+SSG   LDS+LGGGL +GTL L++   +D      LL   L +YFVA+GV    R +VV  +            QLP +L+          Q Q K  L+++    + S    S                          L+IAWQY+KYI                 FCHSYDLSR M  E+LAA    P  ID++ + ++   L             ++S VY+ +   ++          S     V+R+ ++   +            AL   +  L+ L    P+V  +   S HLS       +    + D V ++ SF      G  +  P E   F GLL ++ L  ++ALA     + K+G++R+RRKL IE  HLPPEG R  + T      + GR+   G  P
Sbjct:  437 PRRARGTKPFLNGQTLVSSGLAQLDSILGGGLLVGTLALLDVPRQDAAEASTLLVDDLHRYFVAEGVVAGHRTVVVSDDADGFVRH-----QLPMELSL--------AQXQVKEQLAAVALQPSASDASESR------------------------ELTIAWQYQKYIASADD------HTAPTRFCHSYDLSRAMHPELLAANA--PQRIDISALLEEESDL-------------AVSVVYERLLQRIERCVVATEDKSSSSSAAVVRLCVRDLGSPLLGDADXXHMQALWAFVRRLRTLVATSPVVCTL---SGHLSAFPAEFAASCRHLCDYVFDVKSFV-----GESDLLPAELAEFQGLLEIRRLARVHALACHSLDAAKYGIKRERRKLKIEKFHLPPEGSRSSSATPTPSTNEAGRQWREGPTP 801          
BLAST of NO06G01000 vs. NCBI_GenBank
Match: XP_009820990.1 (hypothetical protein H257_00142 [Aphanomyces astaci] >ETV88590.1 hypothetical protein H257_00142 [Aphanomyces astaci])

HSP 1 Score: 123.2 bits (308), Expect = 2.100e-24
Identity = 125/435 (28.74%), Postives = 190/435 (43.68%), Query Frame = 0
Query:    6 SSFRRLDRPVTTTMTGQGISIEHLSPSKIAPPPPK--APGTRPWINGNTLISSGNKDLDSVLGGGLCLGTLTLVEEDRFSDHALLLGKYFVAQGVSGQQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQKKPALSSIPATSTRSTPPPSALSTFPSGLQQALPTLPFLSTKIEDPLSIAWQYRKYIGKGHSXXXXXXXXXXXXFCHSYDLSRTMQTEVLAAATAPPLLIDLADITDDNKHLQQGNGGNAHTNVNSLSHVYDAVASTLQSLPPRT--VLRVLLKSFLAKTSAWPTASPGHALLLLHSLQQLARG------QPMVVLVTLPSCHLSRRQLRLFSRVADTVLELSSFAARGREGGREGGPREFEAFAGLLYVKGLQHINALAPVRGTSNKWGVRRDRRKLYIEPLHLPPEGVRTLTED 431
            SSFRR          G   +  H+  +  +  P +  + G +P+IN  TL SSG ++LD+V+GGG  LG++ +VE   F      L +YF A+G++ +    VV  + S        VA LP +L+          Q+Q K AL  + A ++ + P                            PL+IAWQY KY  +               FCHS+DLS+ M   V A      +L+D                       +S +  Y ++ +T+Q     +  V+R +L    A   +    S   + LL+    +  RG      +  + ++T+P+  L    +R    +AD V ELSSFA     G  +  P E   F GLL+V  + H++A+      + K GV+RDRRKL +EPLHLPPEG R+   D
Sbjct:    2 SSFRR--------AVGLDSAAPHVPSTTSSSTPARGVSRGVKPFINDQTLTSSGLRELDAVVGGGYLLGSIVVVESSVFGSFGSDLARYFAAEGLANEH---VVYTDAS-------VVASLPLELS--------TAQKQLKAAL--VVAQTSAAAP----------------------------PLTIAWQYEKYAAE---TLPHNVKVTDNRFCHSFDLSKPM---VDAMKRTCHVLLD-----------------------SSSTLAYRSIFATMQQALEHSDDVVRFVLTDVGAPWISGDMTSEHQSQLLI--FVRAVRGLLARHRRRAICMLTVPAFTLPTPLVRSIRHLADYVFELSSFA-----GQSDHLPSELADFGGLLFVHKVAHLHAITGHALDNVKLGVKRDRRKLKLEPLHLPPEGSRSQKPD 344          
BLAST of NO06G01000 vs. NCBI_GenBank
Match: XP_009527264.1 (hypothetical protein PHYSODRAFT_315175 [Phytophthora sojae] >EGZ18206.1 hypothetical protein PHYSODRAFT_315175 [Phytophthora sojae])

HSP 1 Score: 122.9 bits (307), Expect = 2.700e-24
Identity = 127/435 (29.20%), Postives = 185/435 (42.53%), Query Frame = 0
Query:   43 GTRPWINGNTLISSGNKDLDSVLGGGLCLGTLTLVEEDRFSDH----------------ALLLGKYFVAQGVS-GQQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQKKPALSSIPATSTRSTPPPSALSTFPSGLQQALPTLPFLSTKIED-PLSIAWQYRKYIGKGHSXXXXXXXXXXXXFCHSYDLSRTMQTEVLAA---ATAPPLLIDLADITDDNKHL----------QQGNGGNAHTNVNSLSHVYDAVASTLQSLPPRTVLRVLLKSFLAKTSAWPTASPGHALLLLHSLQQLARGQPMVVLVTLPSCHLSRRQLRLFSRVADTVLELSSFAARGREGGREGGPREFEAFAGLLYVKGLQHINALAPVRGTSNKWGVRRDRRKLYIEPLHLPPEGVRTLTEDVEEKKGGRKRNRGKVP 447
            GT+P++NG TL+SSG  +LD+ LGGGL + TL +VE    S                  A+ L +YF A+GV+ G+QR  +V  +       +   AQLP +L+  + +  +Q  + +K                                       + ED PL+IAWQY KY                  FCHSYDLS+ M  E+LAA       PL      ++D  + L          Q+  GG     V  L      + S+L   P    +  L  SF  +  A  + S G   L L     L+         T P+  ++  +LR    ++D VL L+SFA     G R+  P E   F G L ++ L  ++ALA    ++ ++GV+R+RRKL IE  HLPPEG R+ + +     G    N G  P
Sbjct:   17 GTKPFLNGQTLVSSGLSELDAALGGGLLVNTLNVVETPAESSDGASTSLDVGAGASEALAIDLLRYFAAEGVADGKQRVAIVAPDA-----RDFIAAQLPLELSLAQRQVKQQLADTEK---------------------------------------ETEDAPLTIAWQYGKY-------GQQQKQTQKQRFCHSYDLSKAMHREMLAANEPVAIDPLAWMTESVSDVYERLYLAIEELVQQQKEGGGGQVIRVGML-----GLGSSLLGAPDAAHMAALF-SFFRRLRALLSQSKGAVCLALLGSDALS---------TFPTAFVN--ELR---HLSDMVLTLNSFA-----GTRDLLPEELLEFQGSLTLRKLPRVHALACHAPSNTRFGVKRERRKLKIEKFHLPPEGSRS-SSNXXXXCGSNTTNSGHDP 374          
BLAST of NO06G01000 vs. NCBI_GenBank
Match: XP_008899155.1 (hypothetical protein PPTG_06864 [Phytophthora parasitica INRA-310] >ETL48796.1 hypothetical protein L916_01647 [Phytophthora parasitica] >ETM01855.1 hypothetical protein L917_01611 [Phytophthora parasitica] >ETN15629.1 hypothetical protein PPTG_06864 [Phytophthora parasitica INRA-310] >ETP25383.1 hypothetical protein F441_01719 [Phytophthora parasitica CJ01A1] >ETP53412.1 hypothetical protein F442_01697 [Phytophthora parasitica P10297] >KUF79663.1 Elongator complex protein 4 [Phytophthora nicotianae])

HSP 1 Score: 119.8 bits (299), Expect = 2.300e-23
Identity = 125/412 (30.34%), Postives = 179/412 (43.45%), Query Frame = 0
Query:   43 GTRPWINGNTLISSGNKDLDSVLGGGLCLGTLTLVE-----EDRFSDH-----------ALLLGKYFVAQG-VSGQQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQKKPALSSIPATSTRSTPPPSALSTFPSGLQQALPTLPFLSTKIEDPLSIAWQYRKYIGKGHSXXXXXXXXXXXXFCHSYDLSRTMQTEVLAA----ATAPPLLIDLADITDDNKHL----------QQGNGGNAHTNVNSLSHVYDAVASTLQSLPPRTVLRVLLKSFLAKTSAWPTASPGHALLLLHSLQQLARGQPMVVLVTLPSCHLSRRQLRLFSRVADTVLELSSFAARGREGGREGGPREFEAFAGLLYVKGLQHINALAPVRGTSNKWGVRRDRRKLYIEPLHLPPEG 424
            GT+P++NG TL+SSG  +LD+ LGGGL L TL +VE      D  S             A+ + +YFVA+G V G+QR  VV  + +    E     QLP +L+  +  Q KQ+   K                                        K + PL+IAWQY KY  K  +            FCHSYDLS+TM  E++AA    A  P   I   D+ D  + +          Q+ +G      V  L      + S L   PP     + L  F  +  A  + S G   L L     ++           P+  ++  +LR    ++D+VL LSSFA     G R+  P E + F G L +  L  ++ALA    ++ ++GV+R+RRKL +E  HLPPEG
Sbjct:   37 GTKPFLNGQTLVSSGINELDAALGGGLLLRTLNVVETSVPVSDATSSRLDLSSGSSEALAIDMLRYFVAEGVVDGKQRVAVVSPDATAFVNE-----QLPLELSLAQ-RQVKQQLADK---------------------------------------AKDDAPLTIAWQYGKYDQKQQN--------QKQRFCHSYDLSKTMHREMVAANEPIAIDPLSWITGTDVGDTYERIYLAIEELAQQQKTDGDGQVLRVGIL-----GLGSPLFG-PPDAAHMMALFGFFRRLRALLSQSTGAVCLALLGSDAVS---------AFPAAFIN--ELR---HLSDSVLTLSSFA-----GTRDLLPDELQEFQGSLTLLKLPRVHALACHAPSNTRFGVKRERRKLKVEKFHLPPEG 370          
BLAST of NO06G01000 vs. NCBI_GenBank
Match: ETO84340.1 (hypothetical protein F444_01754 [Phytophthora parasitica P1976])

HSP 1 Score: 119.8 bits (299), Expect = 2.300e-23
Identity = 125/412 (30.34%), Postives = 179/412 (43.45%), Query Frame = 0
Query:   43 GTRPWINGNTLISSGNKDLDSVLGGGLCLGTLTLVE-----EDRFSDH-----------ALLLGKYFVAQG-VSGQQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQKKPALSSIPATSTRSTPPPSALSTFPSGLQQALPTLPFLSTKIEDPLSIAWQYRKYIGKGHSXXXXXXXXXXXXFCHSYDLSRTMQTEVLAA----ATAPPLLIDLADITDDNKHL----------QQGNGGNAHTNVNSLSHVYDAVASTLQSLPPRTVLRVLLKSFLAKTSAWPTASPGHALLLLHSLQQLARGQPMVVLVTLPSCHLSRRQLRLFSRVADTVLELSSFAARGREGGREGGPREFEAFAGLLYVKGLQHINALAPVRGTSNKWGVRRDRRKLYIEPLHLPPEG 424
            GT+P++NG TL+SSG  +LD+ LGGGL L TL +VE      D  S             A+ + +YFVA+G V G+QR  VV  + +    E     QLP +L+  +  Q KQ+   K                                        K + PL+IAWQY KY  K  +            FCHSYDLS+TM  E++AA    A  P   I   D+ D  + +          Q+ +G      V  L      + S L   PP     + L  F  +  A  + S G   L L     ++           P+  ++  +LR    ++D+VL LSSFA     G R+  P E + F G L +  L  ++ALA    ++ ++GV+R+RRKL +E  HLPPEG
Sbjct:   37 GTKPFLNGQTLVSSGINELDAALGGGLLLRTLNVVETSVPVSDATSSRLDLSSGSSEALAIDMLRYFVAEGVVDGKQRVAVVSPDATAFVNE-----QLPLELSLAQ-RQVKQQLADK---------------------------------------AKDDAPLTIAWQYGKYDQKQQN--------QKQRFCHSYDLSKTMHREMVAANEPIAIDPLSWITGTDVGDTYERIYLAIEELAQQQKTDGDGQVLRVGIL-----GLGSPLFG-PPDAAHMMALFGFFRRLRALLSQSTGAVCLALLGSDAVS---------AFPAAFIN--ELR---HLSDSVLTLSSFA-----GTRDLLPDELQEFQGSLSLLKLPRVHALACHAPSNTRFGVKRERRKLKVEKFHLPPEG 370          
BLAST of NO06G01000 vs. NCBI_GenBank
Match: XP_024580803.1 (elongator complex protein 4-like [Plasmopara halstedii] >CEG44434.1 elongator complex protein 4-like [Plasmopara halstedii])

HSP 1 Score: 119.8 bits (299), Expect = 2.300e-23
Identity = 116/407 (28.50%), Postives = 173/407 (42.51%), Query Frame = 0
Query:   43 GTRPWINGNTLISSGNKDLDSVLGGGLCLGTLTLVEED---------------RFSDH-ALLLGKYFVAQGVSGQQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQKKPALSSIPATSTRSTPPPSALSTFPSGLQQALPTLPFLSTKIEDPLSIAWQYRKYIGKGHSXXXXXXXXXXXXFCHSYDLSRTMQTEVLAAATAPPLLIDLADITDDNKHLQQGNGGNAHTNVNSLSHVYDAVASTLQSLPPRTVLRVLLKSFLAKTSAWPTASPGHALLLLHSLQQ----LARGQPMVVLVTLPSCHLS---RRQLRLFSRVADTVLELSSFAARGREGGREGGPREFEAFAGLLYVKGLQHINALAPVRGTSNKWGVRRDRRKLYIEPLHLPPEGVRT 427
            GT+P++NG TL+SSG  +LD+ LGGGL L TL +VE                 R SD  A+ L +YF+A+GV+  ++ + + A  +    +E    QLP +L+  + +  +Q   ++K                                         + PL+IAWQY KY  K               FCHS+DLS+TM  E+ +A    P+  DL  + + N  +            ++  H+Y  +   +Q    R    + +  F   +     A   H   L    ++    L +    V L  L S   S      +     VAD+VL L SFA     G R+  P E + F G L +K L  + ALA    ++ + GV+RDRRKL  E  HLPPEG R+
Sbjct:   17 GTKPFLNGQTLVSSGLSELDTALGGGLLLRTLNIVETSTLVEVETTFGLDLSCRASDALAIDLLRYFLAEGVADAKQRVALVAPDASGFFKE----QLPLELSLAQKQVKEQLAHKEKK----------------------------------------DAPLTIAWQYGKYNEK--------QSKCNPRFCHSFDLSKTMHHEMTSA--NEPIAFDLLGVLETNAVIG-----------DTYDHLYLMLEGLIQQKEERDGQVLRIGMFGLGSPLLGPADAAHMTALFGFFRRLRALLCQSDDTVCLTVLASDVQSVFPAAFINELRHVADSVLTLKSFA-----GSRDLLPDELQEFQGSLTLKKLPRVYALACQPTSNARLGVKRDRRKLKFEKFHLPPEGSRS 353          
The following BLAST results are available for this feature:
BLAST of NO06G01000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26090.13.300e-11555.00elongator complex protein 4 [Nannochloropsis gadit... [more]
XP_005856352.12.300e-4769.50elongator complex protein 4, partial [Nannochlorop... [more]
POM59463.14.900e-2630.81Elongator complex protein [Phytophthora palmivora ... [more]
POM76431.11.900e-2530.56Elongator complex protein [Phytophthora palmivora ... [more]
GAX99551.13.200e-2529.23tetraacyldisaccharide 4'-kinase, putative, partial... [more]
XP_009820990.12.100e-2428.74hypothetical protein H257_00142 [Aphanomyces astac... [more]
XP_009527264.12.700e-2429.20hypothetical protein PHYSODRAFT_315175 [Phytophtho... [more]
XP_008899155.12.300e-2330.34hypothetical protein PPTG_06864 [Phytophthora para... [more]
ETO84340.12.300e-2330.34hypothetical protein F444_01754 [Phytophthora para... [more]
XP_024580803.12.300e-2328.50elongator complex protein 4-like [Plasmopara halst... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000351NSK000351Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01000.1NO06G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g26gene4389Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01000.1NO06G01000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01000 ID=NO06G01000|Name=NO06G01000|organism=Nannochloropsis oceanica|type=gene|length=1398bp
ATGGCGTCGTCATCATCCTCCTTCCGTCGGCTGGACAGGCCCGTGACCAC
AACAATGACAGGGCAAGGGATAAGCATCGAGCATTTGTCTCCATCCAAAA
TCGCTCCGCCACCGCCTAAAGCCCCAGGCACCAGGCCTTGGATCAATGGC
AATACGCTCATCTCTTCGGGTAACAAGGACCTTGACAGCGTCTTGGGTGG
TGGCTTGTGTCTGGGCACGCTCACGCTGGTGGAGGAGGACCGATTTTCCG
ATCATGCCTTACTGCTGGGCAAATATTTTGTGGCGCAGGGCGTGAGTGGG
CAGCAGCGTTGCCTCGTGGTGGGCGCGGAGGGCAGCAAGGCTGCGCTTGA
GGAGACATATGTGGCCCAGCTCCCCTTTGACCTGACCTATAAGAGGAATG
AACAATCGAAACAGGAGCAAGAGCAAAAGAAGCCAGCGCTGAGCTCGATA
CCAGCTACATCGACGAGAAGTACACCACCACCGAGTGCCCTGTCAACATT
TCCTTCAGGGCTGCAACAAGCCCTTCCCACCCTTCCTTTTCTGTCAACCA
AAATAGAAGACCCTCTCAGCATCGCGTGGCAGTACCGAAAATATATAGGC
AAAGGCCATTCCTCCTCCTCTTCCTCCTCCTCCTCTTATTCTTCCACGTT
CTGTCACAGCTACGACTTGAGCCGGACAATGCAAACCGAAGTGCTAGCGG
CAGCCACCGCCCCACCCCTTCTCATAGACCTCGCCGACATCACCGACGAC
AACAAACACCTACAGCAAGGTAATGGAGGTAACGCACACACTAATGTCAA
TAGCTTGAGCCACGTCTACGACGCCGTCGCCTCCACCCTCCAATCCCTTC
CCCCTCGCACCGTCCTCCGCGTCCTTCTGAAATCCTTCCTCGCCAAAACC
AGTGCGTGGCCCACCGCTTCCCCTGGGCATGCTCTCCTCCTTCTCCACTC
TCTTCAACAGCTTGCCCGTGGACAGCCAATGGTCGTTCTAGTCACATTAC
CTTCTTGCCATCTCTCTCGAAGACAACTTCGCCTCTTCAGCCGCGTGGCG
GACACGGTCCTGGAGCTCTCCTCTTTTGCTGCACGAGGGAGGGAGGGAGG
GAGGGAGGGAGGACCTCGTGAGTTTGAGGCATTTGCAGGGTTGTTGTATG
TAAAGGGTTTGCAGCATATAAATGCATTGGCTCCTGTCCGAGGAACGTCG
AATAAATGGGGGGTGAGGAGGGATAGGAGAAAATTGTACATTGAACCGTT
GCACTTGCCCCCTGAAGGGGTGCGGACTCTGACAGAAGATGTGGAGGAGA
AGAAGGGTGGGAGAAAGAGGAACAGAGGGAAGGTGCCGGGGATGATGTGC
GCGACGGGTGGAGGGGGGGATGGAGGGGGGTCGTCCTTGGATTTTTGA
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protein sequence of NO06G01000.1

>NO06G01000.1-protein ID=NO06G01000.1-protein|Name=NO06G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MASSSSSFRRLDRPVTTTMTGQGISIEHLSPSKIAPPPPKAPGTRPWING
NTLISSGNKDLDSVLGGGLCLGTLTLVEEDRFSDHALLLGKYFVAQGVSG
QQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQKKPALSSI
PATSTRSTPPPSALSTFPSGLQQALPTLPFLSTKIEDPLSIAWQYRKYIG
KGHSSSSSSSSSYSSTFCHSYDLSRTMQTEVLAAATAPPLLIDLADITDD
NKHLQQGNGGNAHTNVNSLSHVYDAVASTLQSLPPRTVLRVLLKSFLAKT
SAWPTASPGHALLLLHSLQQLARGQPMVVLVTLPSCHLSRRQLRLFSRVA
DTVLELSSFAARGREGGREGGPREFEAFAGLLYVKGLQHINALAPVRGTS
NKWGVRRDRRKLYIEPLHLPPEGVRTLTEDVEEKKGGRKRNRGKVPGMMC
ATGGGGDGGGSSLDF*
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Synonyms
Publications