NO06G00970, NO06G00970 (gene) Nannochloropsis oceanica

Overview
NameNO06G00970
Unique NameNO06G00970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length474
Alignment locationchr6:320284..320757 -

Link to JBrowse

Properties
Property NameValue
DescriptionSumo ligase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:320284..320757 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036361SAP_dom_sf
IPR003034SAP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0016874ligase activity
GO:0008270zinc ion binding
Homology
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BLAST of NO06G00970 vs. NCBI_GenBank
Match: EWM26145.1 (sumo ligase [Nannochloropsis gaditana])

HSP 1 Score: 75.1 bits (183), Expect = 2.200e-10
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 0 
Query:    6 MDINKWCGPEDYARFKEVLACELNKLRIVDIKVVLTHMRLAKSGNKAEMMQRIENTIAVLNSQQRFAERDSCIEVIRNIVQEVRGFSQLPTLGPNRSRNPSTSIAAGTHG 116
            M+ NK C PED   FK  L+ EL++LRI +IK ++  + L +SGNK+E++ R+       N  +   +RD  IE+IR  +   +GFS+LP L    S     + AAG++G
Sbjct:    1 MESNKLCSPEDLENFKLFLSAELSRLRIPEIKHMVMRLHLPRSGNKSELVSRLVAQFEAFNHPKTLFQRDQLIELIRQQLIAYQGFSRLPEL--FSSTGGEDAAAAGSNG 108
The following BLAST results are available for this feature:
BLAST of NO06G00970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26145.12.200e-1038.18sumo ligase [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00970.1NO06G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00970.1NO06G00970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00970 ID=NO06G00970|Name=NO06G00970|organism=Nannochloropsis oceanica|type=gene|length=474bp
ATGGCTGGCCAGGTCATGGATATCAACAAATGGTGTGGACCGGAGGATTA
CGCGCGATTCAAAGAAGTTTTGGCGTGTGAGTTAAACAAATTGCGCATCG
TGGACATCAAGGTCGTCCTTACTCACATGCGCCTAGCCAAGTCGGGCAAC
AAGGCCGAAATGATGCAACGGATCGAGAATACCATCGCGGTGCTCAACAG
CCAGCAACGCTTTGCAGAACGGGACAGCTGTATTGAGGTGATACGCAATA
TCGTTCAGGAAGTGAGGGGGTTCAGTCAATTGCCGACCCTTGGGCCAAAC
CGATCTCGCAACCCCTCGACAAGCATAGCTGCTGGTACCCATGGTGGTAG
CGTTGGCGGAGGTGGCAGTGGAGGAGAGACAAGCAGCAGTTCTTTCATGA
TGCGCTTGAATGTTGGTAATGCCGCTGGCAGTGGGGGTGCTTGGGGGGCG
GAGGGGCATCTGCCTCATCATTGA
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protein sequence of NO06G00970.1

>NO06G00970.1-protein ID=NO06G00970.1-protein|Name=NO06G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MAGQVMDINKWCGPEDYARFKEVLACELNKLRIVDIKVVLTHMRLAKSGN
KAEMMQRIENTIAVLNSQQRFAERDSCIEVIRNIVQEVRGFSQLPTLGPN
RSRNPSTSIAAGTHGGSVGGGGSGGETSSSSFMMRLNVGNAAGSGGAWGA
EGHLPHH*
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Synonyms
Publications